Wall clock time and date at job start Tue Mar 31 2020 16:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.47263 * 2 1 4 4 C 1.38380 * 119.85375 * 265.02169 * 3 2 1 5 5 C 1.37939 * 120.14302 * 179.72268 * 4 3 2 6 6 C 1.39595 * 119.85256 * 0.48320 * 5 4 3 7 7 C 1.47847 * 120.14215 * 179.79337 * 6 5 4 8 8 O 1.21546 * 119.99814 * 179.72496 * 7 6 5 9 9 N 1.34771 * 119.99883 * 359.72523 * 7 6 5 10 10 C 1.46501 * 120.00020 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47405 * 179.97438 * 10 9 7 12 12 C 1.53781 * 113.61492 * 174.99701 * 11 10 9 13 13 C 1.53781 * 87.08070 * 140.06794 * 12 11 10 14 14 N 1.46506 * 113.61361 * 89.11956 * 13 12 11 15 15 C 1.36932 * 119.99948 * 156.53166 * 14 13 12 16 16 H 1.08003 * 120.00194 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99941 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47283 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46791 * 120.00116 * 19 17 15 22 22 H 1.48492 * 109.47273 * 240.00144 * 19 17 15 23 23 C 1.53773 * 87.17302 * 334.52628 * 13 12 11 24 24 C 1.39557 * 119.71118 * 359.51848 * 6 5 4 25 25 C 1.37979 * 119.85109 * 0.24958 * 24 6 5 26 26 C 1.50704 * 119.92361 * 179.97438 * 25 24 6 27 27 C 1.53000 * 109.47326 * 264.99829 * 26 25 24 28 28 H 1.08995 * 109.47215 * 300.00516 * 1 2 3 29 29 H 1.09011 * 109.47023 * 59.99930 * 1 2 3 30 30 H 1.08995 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47282 * 240.00063 * 2 1 3 32 32 H 1.08996 * 109.47287 * 119.99730 * 2 1 3 33 33 H 1.07999 * 119.92362 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.06835 * 180.27847 * 5 4 3 35 35 H 0.96997 * 120.00572 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.46995 * 59.99707 * 10 9 7 37 37 H 1.08998 * 109.46746 * 299.99904 * 10 9 7 38 38 H 1.08998 * 112.84975 * 43.80400 * 11 10 9 39 39 H 1.09001 * 113.61537 * 25.52248 * 12 11 10 40 40 H 1.08998 * 113.61680 * 254.61401 * 12 11 10 41 41 H 1.09002 * 113.61408 * 219.93560 * 13 12 11 42 42 H 0.96997 * 119.99707 * 336.52824 * 14 13 12 43 43 H 0.97000 * 119.99576 * 179.97438 * 18 17 15 44 44 H 1.09007 * 113.61678 * 140.01927 * 23 13 12 45 45 H 1.09000 * 113.61916 * 270.92600 * 23 13 12 46 46 H 1.08000 * 120.07203 * 180.23264 * 24 6 5 47 47 H 1.09001 * 109.47358 * 25.00564 * 26 25 24 48 48 H 1.09006 * 109.46596 * 145.00380 * 26 25 24 49 49 H 1.09001 * 109.46594 * 60.00264 * 27 26 25 50 50 H 1.09002 * 109.46981 * 179.97438 * 27 26 25 51 51 H 1.08993 * 109.47222 * 300.00757 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3602 2.0356 -1.1956 5 6 2.8152 3.3378 -1.2031 6 6 2.9542 4.0322 -0.0001 7 6 3.4456 5.4266 -0.0002 8 8 3.5609 6.0304 1.0483 9 7 3.7657 6.0281 -1.1630 10 6 4.2532 7.4096 -1.1632 11 6 4.5420 7.8484 -2.6001 12 6 4.9445 9.3275 -2.7234 13 6 5.9790 8.8774 -3.7684 14 7 5.4577 8.8526 -5.1374 15 6 6.3170 8.9502 -6.1991 16 1 7.3790 9.0458 -6.0273 17 6 5.8231 8.9262 -7.4961 18 7 4.5288 8.8102 -7.7055 19 14 6.9952 9.0601 -8.9445 20 1 8.3883 9.1808 -8.4444 21 1 6.8770 7.8455 -9.7907 22 1 6.6522 10.2597 -9.7497 23 6 5.9648 7.5030 -3.0789 24 6 2.6218 3.4063 1.2022 25 6 2.1633 2.1050 1.1952 26 6 1.8044 1.4273 2.4926 27 6 3.0020 0.6174 2.9933 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2557 1.4959 -2.1253 34 1 3.0664 3.8179 -2.1373 35 1 3.6740 5.5461 -1.9998 36 1 5.1679 7.4722 -0.5737 37 1 3.4957 8.0621 -0.7289 38 1 3.7613 7.5487 -3.2992 39 1 5.3898 9.7359 -1.8161 40 1 4.1580 9.9615 -3.1326 41 1 6.9344 9.3961 -3.6886 42 1 4.5039 8.7671 -5.2916 43 1 4.1837 8.7939 -8.6118 44 1 6.0013 6.6648 -3.7749 45 1 6.6884 7.4134 -2.2686 46 1 2.7235 3.9393 2.1360 47 1 1.5393 2.1804 3.2347 48 1 0.9567 0.7611 2.3321 49 1 3.8496 1.2836 3.1537 50 1 2.7425 0.1276 3.9319 51 1 3.2671 -0.1356 2.2512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091396080.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:12 Heat of formation + Delta-G solvation = -5.141925 kcal Electronic energy + Delta-G solvation = -27240.734686 eV Core-core repulsion = 23525.773038 eV Total energy + Delta-G solvation = -3714.961648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.55298 -39.28830 -38.37140 -35.04463 -34.64948 -33.76260 -33.19554 -30.43901 -30.15543 -29.52221 -27.30047 -25.09694 -25.00561 -24.08681 -23.50696 -22.06206 -21.84875 -21.58552 -19.92228 -18.44723 -17.74827 -17.18374 -16.67677 -15.86800 -15.65395 -15.33836 -15.12099 -14.84034 -14.26181 -14.12341 -14.10352 -13.96838 -13.95814 -13.59335 -13.55616 -13.27027 -12.92764 -12.82200 -12.71843 -12.32397 -12.14925 -11.93345 -11.84849 -11.65425 -11.47175 -11.38022 -11.12364 -11.05158 -10.92381 -10.87436 -10.50475 -10.19828 -10.12459 -9.81267 -9.71185 -9.47959 -9.13609 -9.04404 -8.91210 -8.80292 -7.01950 -5.82935 -3.11854 0.63890 1.11061 2.74048 3.16699 3.39912 3.46037 3.48065 3.65140 4.31919 4.38293 4.53192 4.53941 4.61431 4.69638 4.87416 4.93999 4.95106 5.03810 5.04422 5.08838 5.11768 5.20751 5.24602 5.28786 5.41905 5.43718 5.50389 5.55522 5.61171 5.63099 5.67625 5.70974 5.79158 5.81440 5.85973 5.94343 5.95898 6.07858 6.09297 6.16728 6.20617 6.32717 6.35873 6.41051 6.57930 6.65285 6.73074 6.88714 7.02868 7.50712 7.67764 8.18929 8.36300 9.47091 10.04650 10.38919 11.39560 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.002062 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.893168 B =13578.551931 C =14781.061571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.057 4.057 4 C -0.122 4.122 5 C -0.086 4.086 6 C -0.134 4.134 7 C 0.555 3.445 8 O -0.545 6.545 9 N -0.719 5.719 10 C 0.131 3.869 11 C -0.120 4.120 12 C -0.147 4.147 13 C 0.167 3.833 14 N -0.706 5.706 15 C -0.241 4.241 16 H 0.073 0.927 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.168 4.168 24 C -0.056 4.056 25 C -0.091 4.091 26 C -0.088 4.088 27 C -0.149 4.149 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.134 0.866 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 -18.000 19.439 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.057 4.057 4 C -0.140 4.140 5 C -0.105 4.105 6 C -0.137 4.137 7 C 0.342 3.658 8 O -0.423 6.423 9 N -0.370 5.370 10 C 0.008 3.992 11 C -0.139 4.139 12 C -0.186 4.186 13 C 0.055 3.945 14 N -0.345 5.345 15 C -0.372 4.372 16 H 0.091 0.909 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.209 4.209 24 C -0.075 4.075 25 C -0.091 4.091 26 C -0.125 4.125 27 C -0.206 4.206 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.152 0.848 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.050 -17.496 20.018 27.505 hybrid contribution 0.207 -0.169 -1.450 1.475 sum -6.843 -17.664 18.568 26.526 Atomic orbital electron populations 1.21765 0.94466 1.01868 1.02458 1.20669 0.96416 0.92551 1.03263 1.19948 0.97082 0.96116 0.92580 1.20985 1.00371 0.94879 0.97794 1.21341 0.97326 0.94652 0.97149 1.19956 1.04864 0.94414 0.94481 1.18290 0.77534 0.86055 0.83892 1.90749 1.54168 1.66031 1.31401 1.46002 1.66497 1.15597 1.08868 1.21506 0.99141 0.80876 0.97684 1.22764 0.98853 0.98235 0.94036 1.23418 1.00630 0.94524 1.00058 1.21057 0.95322 0.93090 0.85056 1.42176 1.07047 1.86486 0.98761 1.19337 0.90255 1.42276 0.85342 0.90932 1.24769 0.95959 1.02786 0.97452 1.69671 1.10941 1.57250 1.20194 0.86098 0.79931 0.77228 0.82818 1.20489 1.21853 1.21831 1.23934 0.94520 1.02357 1.00124 1.21122 0.95050 0.93607 0.97719 1.19689 1.00535 0.93916 0.94929 1.20604 0.98815 0.99388 0.93670 1.21777 0.97964 1.00031 1.00827 0.92355 0.92350 0.92236 0.90820 0.90413 0.85366 0.85411 0.76293 0.91448 0.91688 0.88897 0.90404 0.91293 0.92036 0.78123 0.93498 0.91492 0.91392 0.84813 0.90868 0.90517 0.92367 0.92290 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.72 37.16 0.36 -0.48 16 2 C -0.09 -0.57 5.38 -27.88 -0.15 -0.72 16 3 C -0.06 -0.48 5.14 -104.53 -0.54 -1.02 16 4 C -0.12 -1.09 9.66 -39.64 -0.38 -1.47 16 5 C -0.09 -0.87 9.54 -39.18 -0.37 -1.24 16 6 C -0.13 -1.61 5.87 -104.97 -0.62 -2.23 16 7 C 0.55 7.91 7.77 -12.33 -0.10 7.82 16 8 O -0.54 -9.47 16.35 5.33 0.09 -9.39 16 9 N -0.72 -9.31 5.51 -61.25 -0.34 -9.65 16 10 C 0.13 1.80 5.52 -4.04 -0.02 1.78 16 11 C -0.12 -1.79 3.64 -89.67 -0.33 -2.12 16 12 C -0.15 -2.34 7.38 -25.92 -0.19 -2.53 16 13 C 0.17 3.23 4.55 -67.12 -0.31 2.92 16 14 N -0.71 -17.23 5.31 -52.64 -0.28 -17.51 16 15 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 16 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 19 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C -0.17 -2.79 7.45 -25.78 -0.19 -2.98 16 24 C -0.06 -0.63 9.22 -39.18 -0.36 -0.99 16 25 C -0.09 -0.82 5.13 -104.68 -0.54 -1.36 16 26 C -0.09 -0.60 5.38 -27.88 -0.15 -0.75 16 27 C -0.15 -0.92 9.72 37.16 0.36 -0.56 16 28 H 0.06 0.34 6.79 -51.93 -0.35 -0.02 16 29 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 32 H 0.08 0.43 5.59 -51.93 -0.29 0.14 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.11 6.41 -52.49 -0.34 0.78 16 35 H 0.40 4.52 6.51 -40.82 -0.27 4.26 16 36 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 42 H 0.38 9.92 7.90 -40.82 -0.32 9.60 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 45 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 46 H 0.13 1.52 7.65 -52.49 -0.40 1.12 16 47 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 48 H 0.08 0.44 5.60 -51.93 -0.29 0.15 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 51 H 0.06 0.35 6.79 -51.93 -0.35 -0.01 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -31.74 408.27 -10.90 -42.64 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -8.46 Total: 10.74 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.77 Total: -13.14 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.11 Total: -54.06 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.74 -10.90 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091396080.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.501 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds