Wall clock time and date at job start Tue Mar 31 2020 16:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.47263 * 2 1 4 4 C 1.38380 * 119.85375 * 265.02169 * 3 2 1 5 5 C 1.37939 * 120.14302 * 179.72268 * 4 3 2 6 6 C 1.39595 * 119.85256 * 0.48320 * 5 4 3 7 7 C 1.47847 * 120.14215 * 179.79337 * 6 5 4 8 8 O 1.21546 * 119.99814 * 179.72496 * 7 6 5 9 9 N 1.34771 * 119.99883 * 359.72523 * 7 6 5 10 10 C 1.46501 * 120.00020 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47405 * 179.97438 * 10 9 7 12 12 C 1.53781 * 113.61492 * 174.99701 * 11 10 9 13 13 C 1.53781 * 87.08070 * 140.06794 * 12 11 10 14 14 N 1.46506 * 113.61361 * 89.11956 * 13 12 11 15 15 C 1.36932 * 119.99948 * 156.53166 * 14 13 12 16 16 H 1.08003 * 120.00194 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99941 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47283 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46791 * 120.00116 * 19 17 15 22 22 H 1.48492 * 109.47273 * 240.00144 * 19 17 15 23 23 C 1.53773 * 87.17302 * 334.52628 * 13 12 11 24 24 C 1.39557 * 119.71118 * 359.51848 * 6 5 4 25 25 C 1.37979 * 119.85109 * 0.24958 * 24 6 5 26 26 C 1.50704 * 119.92361 * 179.97438 * 25 24 6 27 27 C 1.53000 * 109.47326 * 264.99829 * 26 25 24 28 28 H 1.08995 * 109.47215 * 300.00516 * 1 2 3 29 29 H 1.09011 * 109.47023 * 59.99930 * 1 2 3 30 30 H 1.08995 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47282 * 240.00063 * 2 1 3 32 32 H 1.08996 * 109.47287 * 119.99730 * 2 1 3 33 33 H 1.07999 * 119.92362 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.06835 * 180.27847 * 5 4 3 35 35 H 0.96997 * 120.00572 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.46995 * 59.99707 * 10 9 7 37 37 H 1.08998 * 109.46746 * 299.99904 * 10 9 7 38 38 H 1.08998 * 112.84975 * 43.80400 * 11 10 9 39 39 H 1.09001 * 113.61537 * 25.52248 * 12 11 10 40 40 H 1.08998 * 113.61680 * 254.61401 * 12 11 10 41 41 H 1.09002 * 113.61408 * 219.93560 * 13 12 11 42 42 H 0.96997 * 119.99707 * 336.52824 * 14 13 12 43 43 H 0.97000 * 119.99576 * 179.97438 * 18 17 15 44 44 H 1.09007 * 113.61678 * 140.01927 * 23 13 12 45 45 H 1.09000 * 113.61916 * 270.92600 * 23 13 12 46 46 H 1.08000 * 120.07203 * 180.23264 * 24 6 5 47 47 H 1.09001 * 109.47358 * 25.00564 * 26 25 24 48 48 H 1.09006 * 109.46596 * 145.00380 * 26 25 24 49 49 H 1.09001 * 109.46594 * 60.00264 * 27 26 25 50 50 H 1.09002 * 109.46981 * 179.97438 * 27 26 25 51 51 H 1.08993 * 109.47222 * 300.00757 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3602 2.0356 -1.1956 5 6 2.8152 3.3378 -1.2031 6 6 2.9542 4.0322 -0.0001 7 6 3.4456 5.4266 -0.0002 8 8 3.5609 6.0304 1.0483 9 7 3.7657 6.0281 -1.1630 10 6 4.2532 7.4096 -1.1632 11 6 4.5420 7.8484 -2.6001 12 6 4.9445 9.3275 -2.7234 13 6 5.9790 8.8774 -3.7684 14 7 5.4577 8.8526 -5.1374 15 6 6.3170 8.9502 -6.1991 16 1 7.3790 9.0458 -6.0273 17 6 5.8231 8.9262 -7.4961 18 7 4.5288 8.8102 -7.7055 19 14 6.9952 9.0601 -8.9445 20 1 8.3883 9.1808 -8.4444 21 1 6.8770 7.8455 -9.7907 22 1 6.6522 10.2597 -9.7497 23 6 5.9648 7.5030 -3.0789 24 6 2.6218 3.4063 1.2022 25 6 2.1633 2.1050 1.1952 26 6 1.8044 1.4273 2.4926 27 6 3.0020 0.6174 2.9933 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2557 1.4959 -2.1253 34 1 3.0664 3.8179 -2.1373 35 1 3.6740 5.5461 -1.9998 36 1 5.1679 7.4722 -0.5737 37 1 3.4957 8.0621 -0.7289 38 1 3.7613 7.5487 -3.2992 39 1 5.3898 9.7359 -1.8161 40 1 4.1580 9.9615 -3.1326 41 1 6.9344 9.3961 -3.6886 42 1 4.5039 8.7671 -5.2916 43 1 4.1837 8.7939 -8.6118 44 1 6.0013 6.6648 -3.7749 45 1 6.6884 7.4134 -2.2686 46 1 2.7235 3.9393 2.1360 47 1 1.5393 2.1804 3.2347 48 1 0.9567 0.7611 2.3321 49 1 3.8496 1.2836 3.1537 50 1 2.7425 0.1276 3.9319 51 1 3.2671 -0.1356 2.2512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091396080.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:11 Heat of formation + Delta-G solvation = -22.423301 kcal Electronic energy + Delta-G solvation = -27241.484062 eV Core-core repulsion = 23525.773038 eV Total energy + Delta-G solvation = -3715.711024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46359 -40.37126 -39.62909 -36.11188 -35.68561 -34.92615 -34.34036 -32.12884 -30.93639 -30.39614 -28.53039 -26.45242 -25.93915 -25.47552 -24.55842 -23.13215 -22.67283 -22.49313 -20.88153 -19.81177 -19.35628 -18.56694 -17.57028 -16.77961 -16.57429 -16.52838 -16.40412 -16.02355 -15.77436 -15.41600 -14.91187 -14.75575 -14.72788 -14.65893 -14.58703 -14.39817 -14.14227 -13.77699 -13.48201 -13.29952 -13.22572 -12.96205 -12.93020 -12.78080 -12.67412 -12.49558 -12.13667 -12.12964 -12.07218 -12.04161 -11.74072 -11.56696 -11.49417 -11.47140 -11.10079 -10.92326 -10.77203 -10.19702 -9.84534 -9.58765 -9.00206 -7.95762 -5.23904 -0.18698 0.36237 1.47917 1.48272 1.58349 1.78200 2.11756 2.55418 2.80489 3.36896 3.58432 3.68970 3.71719 3.76655 3.82549 3.88145 3.95594 4.11406 4.13543 4.19733 4.30901 4.38266 4.40070 4.46949 4.52442 4.52992 4.58258 4.70572 4.73228 4.76895 4.86980 4.91984 4.97895 4.99927 5.05825 5.07525 5.10069 5.10789 5.21184 5.24193 5.30981 5.33724 5.33990 5.44505 5.47222 5.48875 5.53380 5.64765 5.64992 5.93538 6.28084 6.45853 7.11177 7.33154 8.10032 8.32593 9.27641 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.002062 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.893168 B =13578.551931 C =14781.061571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.053 4.053 4 C -0.126 4.126 5 C -0.089 4.089 6 C -0.156 4.156 7 C 0.554 3.446 8 O -0.583 6.583 9 N -0.713 5.713 10 C 0.139 3.861 11 C -0.103 4.103 12 C -0.133 4.133 13 C 0.144 3.856 14 N -0.719 5.719 15 C -0.241 4.241 16 H 0.076 0.924 17 C -0.076 4.076 18 N -0.968 5.968 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.293 1.293 22 H -0.295 1.295 23 C -0.154 4.154 24 C -0.071 4.071 25 C -0.092 4.092 26 C -0.087 4.087 27 C -0.147 4.147 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.122 0.878 47 H 0.072 0.928 48 H 0.092 0.908 49 H 0.044 0.956 50 H 0.073 0.927 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.090 -19.829 20.108 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.054 4.054 4 C -0.144 4.144 5 C -0.108 4.108 6 C -0.159 4.159 7 C 0.343 3.657 8 O -0.465 6.465 9 N -0.364 5.364 10 C 0.016 3.984 11 C -0.121 4.121 12 C -0.172 4.172 13 C 0.034 3.966 14 N -0.358 5.358 15 C -0.372 4.372 16 H 0.094 0.906 17 C -0.268 4.268 18 N -0.619 5.619 19 Si 0.801 3.199 20 H -0.191 1.191 21 H -0.221 1.221 22 H -0.222 1.222 23 C -0.194 4.194 24 C -0.090 4.090 25 C -0.092 4.092 26 C -0.124 4.124 27 C -0.204 4.204 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.140 0.860 47 H 0.090 0.910 48 H 0.110 0.890 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.815 -19.334 20.715 29.143 hybrid contribution 0.149 0.360 -1.576 1.623 sum -6.666 -18.974 19.139 27.762 Atomic orbital electron populations 1.21762 0.93927 1.02728 1.02045 1.20741 0.96734 0.90922 1.04359 1.20300 0.95728 0.97241 0.92089 1.21297 0.99645 0.94462 0.98974 1.21490 0.97265 0.95251 0.96799 1.19875 1.06808 0.93533 0.95657 1.18655 0.76835 0.86824 0.83418 1.90717 1.56037 1.67115 1.32646 1.45938 1.65990 1.15330 1.09104 1.21353 0.99251 0.81324 0.96465 1.22547 0.97635 0.97453 0.94504 1.23328 0.99212 0.95000 0.99695 1.21375 0.96175 0.95281 0.83747 1.42302 1.06271 1.86905 1.00287 1.19700 0.90814 1.40389 0.86334 0.90571 1.25547 0.97436 1.03790 1.00035 1.69815 1.12603 1.59247 1.20244 0.85089 0.78640 0.76614 0.79511 1.19092 1.22063 1.22199 1.23762 0.96093 0.99632 0.99916 1.21171 0.96044 0.94653 0.97106 1.19933 0.99752 0.93163 0.96353 1.20662 0.99611 0.99581 0.92544 1.21765 0.97128 0.99772 1.01720 0.92587 0.92991 0.90762 0.89728 0.89381 0.83233 0.84398 0.75298 0.91279 0.91731 0.89959 0.87602 0.92244 0.92248 0.79339 0.94034 0.93233 0.89137 0.85970 0.90973 0.88975 0.93698 0.90774 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.72 71.98 0.70 -0.60 16 2 C -0.09 -0.87 5.38 29.85 0.16 -0.71 16 3 C -0.05 -0.81 5.14 -19.81 -0.10 -0.91 16 4 C -0.13 -2.03 9.66 22.23 0.21 -1.81 16 5 C -0.09 -1.74 9.54 22.53 0.21 -1.52 16 6 C -0.16 -3.76 5.87 -20.09 -0.12 -3.88 16 7 C 0.55 15.93 7.77 86.79 0.67 16.60 16 8 O -0.58 -20.73 16.35 -3.86 -0.06 -20.80 16 9 N -0.71 -18.13 5.51 -465.99 -2.57 -20.69 16 10 C 0.14 3.68 5.52 86.38 0.48 4.16 16 11 C -0.10 -2.96 3.64 -10.18 -0.04 -3.00 16 12 C -0.13 -4.07 7.38 31.12 0.23 -3.84 16 13 C 0.14 5.48 4.55 45.51 0.21 5.69 16 14 N -0.72 -35.37 5.31 -320.45 -1.70 -37.07 16 15 C -0.24 -13.15 9.97 84.04 0.84 -12.31 16 16 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 17 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 18 N -0.97 -58.37 13.06 21.65 0.28 -58.08 16 19 Si 0.97 45.64 29.55 68.60 2.03 47.66 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 C -0.15 -4.90 7.45 31.21 0.23 -4.67 16 24 C -0.07 -1.60 9.22 22.53 0.21 -1.39 16 25 C -0.09 -1.59 5.13 -19.90 -0.10 -1.69 16 26 C -0.09 -1.07 5.38 29.85 0.16 -0.91 16 27 C -0.15 -1.59 9.72 71.98 0.70 -0.89 16 28 H 0.06 0.52 6.79 -2.39 -0.02 0.50 16 29 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.67 8.05 -2.38 -0.02 0.65 16 32 H 0.09 0.70 5.59 -2.39 -0.01 0.68 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 2.27 6.41 -2.91 -0.02 2.25 16 35 H 0.41 8.98 6.51 -92.71 -0.60 8.38 16 36 H 0.07 1.85 7.85 -2.39 -0.02 1.83 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.11 2.67 8.10 -2.39 -0.02 2.65 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 2.27 8.11 -2.39 -0.02 2.25 16 42 H 0.37 19.70 7.90 -92.71 -0.73 18.96 16 43 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.09 2.51 7.91 -2.39 -0.02 2.49 16 46 H 0.12 2.95 7.65 -2.91 -0.02 2.93 16 47 H 0.07 0.90 8.05 -2.39 -0.02 0.89 16 48 H 0.09 0.85 5.60 -2.38 -0.01 0.84 16 49 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 51 H 0.06 0.61 6.79 -2.39 -0.02 0.60 16 Total: -1.00 -68.90 408.27 2.70 -66.20 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.40 Total: 38.30 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 5.12 Total: -15.52 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -3.98 Total: -115.84 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.06 Total: -20.80 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -68.90 2.70 -66.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091396080.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.778 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds