Wall clock time and date at job start Tue Mar 31 2020 15:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.52253 * 2 1 4 4 C 1.53044 * 109.49973 * 120.08050 * 2 1 3 5 5 C 1.53043 * 109.53416 * 58.58591 * 4 2 1 6 6 C 1.53191 * 109.31019 * 61.36741 * 5 4 2 7 7 H 1.08997 * 109.58909 * 65.29226 * 6 5 4 8 8 C 1.53002 * 109.58737 * 185.57365 * 6 5 4 9 9 N 1.46497 * 109.47459 * 179.97438 * 8 6 5 10 10 C 1.34774 * 120.00033 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00207 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99948 * 180.02562 * 10 9 8 13 13 C 1.50706 * 109.47113 * 179.97438 * 12 10 9 14 14 C 1.38232 * 119.99717 * 89.99987 * 13 12 10 15 15 C 1.38239 * 120.00100 * 179.97438 * 14 13 12 16 16 C 1.38238 * 119.99661 * 359.97438 * 15 14 13 17 17 C 1.38236 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.38234 * 119.99964 * 269.91419 * 13 12 10 19 19 N 1.46922 * 108.77689 * 305.36158 * 6 5 4 20 20 C 1.36940 * 120.62914 * 233.61120 * 19 6 5 21 21 H 1.07995 * 120.00174 * 30.95383 * 20 19 6 22 22 C 1.38819 * 120.00017 * 210.95038 * 20 19 6 23 23 N 1.31627 * 119.99761 * 14.17344 * 22 20 19 24 24 Si 1.86792 * 120.00220 * 194.17468 * 22 20 19 25 25 H 1.48497 * 109.47594 * 90.00036 * 24 22 20 26 26 H 1.48504 * 109.46973 * 210.00237 * 24 22 20 27 27 H 1.48505 * 109.47025 * 329.99550 * 24 22 20 28 28 C 1.46920 * 118.73997 * 53.60894 * 19 6 5 29 29 H 1.09004 * 109.47522 * 299.91463 * 1 2 3 30 30 H 1.09001 * 109.47507 * 59.92034 * 1 2 3 31 31 H 1.08999 * 109.47026 * 179.91683 * 1 2 3 32 32 H 1.08999 * 109.46937 * 180.08366 * 3 2 1 33 33 H 1.08997 * 109.46959 * 300.08512 * 3 2 1 34 34 H 1.08998 * 109.46843 * 60.08361 * 3 2 1 35 35 H 1.08997 * 109.46081 * 298.56743 * 4 2 1 36 36 H 1.08996 * 109.45984 * 178.60569 * 4 2 1 37 37 H 1.09002 * 109.50016 * 301.41473 * 5 4 2 38 38 H 1.08999 * 109.49610 * 181.31136 * 5 4 2 39 39 H 1.09003 * 109.47192 * 59.99499 * 8 6 5 40 40 H 1.08998 * 109.47292 * 299.99994 * 8 6 5 41 41 H 0.96995 * 120.00083 * 0.02562 * 9 8 6 42 42 H 1.09005 * 109.46941 * 60.00447 * 12 10 9 43 43 H 1.08996 * 109.47311 * 299.99651 * 12 10 9 44 44 H 1.08000 * 120.00508 * 0.25572 * 14 13 12 45 45 H 1.07998 * 120.00253 * 179.97438 * 15 14 13 46 46 H 1.08002 * 119.99920 * 179.97438 * 16 15 14 47 47 H 1.08006 * 119.99932 * 179.97438 * 17 16 15 48 48 H 1.07997 * 120.00027 * 0.08183 * 18 13 12 49 49 H 0.96995 * 119.99659 * 180.02562 * 23 22 20 50 50 H 1.09008 * 109.58871 * 186.60281 * 28 19 6 51 51 H 1.09008 * 109.70392 * 66.25307 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 1.5030 -2.1558 1.2660 6 6 2.0140 -2.9039 0.0307 7 1 3.0976 -3.0064 0.0879 8 6 1.3704 -4.2906 -0.0319 9 7 1.8602 -5.0035 -1.2142 10 6 1.4264 -6.2524 -1.4758 11 8 0.6307 -6.7863 -0.7322 12 6 1.9308 -6.9860 -2.6918 13 6 1.2966 -8.3518 -2.7534 14 6 0.1027 -8.5297 -3.4269 15 6 -0.4788 -9.7825 -3.4839 16 6 0.1341 -10.8576 -2.8678 17 6 1.3287 -10.6799 -2.1952 18 6 1.9099 -9.4270 -2.1379 19 7 1.6515 -2.1381 -1.1696 20 6 0.9635 -2.7313 -2.1943 21 1 0.2677 -3.5305 -1.9861 22 6 1.1604 -2.3052 -3.5007 23 7 2.1909 -1.5412 -3.7955 24 14 -0.0370 -2.8161 -4.8403 25 1 -1.1263 -1.8118 -4.9400 26 1 0.6792 -2.9002 -6.1385 27 1 -0.6156 -4.1427 -4.5074 28 6 2.0412 -0.7238 -1.2496 29 1 -0.3634 0.5125 0.8908 30 1 -0.3634 0.5151 -0.8893 31 1 -0.3633 -1.0277 -0.0015 32 1 3.1312 1.4411 -0.0015 33 1 1.6771 1.9566 -0.8892 34 1 1.6796 1.9557 0.8907 35 1 1.6988 -0.1959 2.1389 36 1 3.1305 -0.7444 1.2353 37 1 0.4132 -2.1355 1.2540 38 1 1.8481 -2.6629 2.1670 39 1 0.2872 -4.1859 -0.0940 40 1 1.6301 -4.8526 0.8652 41 1 2.4968 -4.5768 -1.8087 42 1 3.0139 -7.0913 -2.6292 43 1 1.6714 -6.4239 -3.5888 44 1 -0.3737 -7.6908 -3.9124 45 1 -1.4118 -9.9214 -4.0097 46 1 -0.3203 -11.8363 -2.9120 47 1 1.8073 -11.5198 -1.7136 48 1 2.8428 -9.2880 -1.6118 49 1 2.3283 -1.2432 -4.7083 50 1 1.6006 -0.2730 -2.1390 51 1 3.1272 -0.6440 -1.2994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099126925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:33 Heat of formation + Delta-G solvation = -17.524351 kcal Electronic energy + Delta-G solvation = -29461.039309 eV Core-core repulsion = 25745.540719 eV Total energy + Delta-G solvation = -3715.498590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.04608 -40.21932 -39.41549 -36.58478 -34.95979 -33.94844 -33.42144 -31.75976 -31.72994 -29.54129 -28.01824 -27.87546 -27.30507 -24.90002 -23.84166 -23.45768 -22.52455 -21.69312 -20.96662 -19.45715 -18.50733 -17.71720 -17.55312 -17.25332 -16.73214 -16.45048 -15.95942 -15.82645 -15.59050 -15.30140 -15.21591 -14.81056 -14.71357 -14.43386 -14.26646 -14.05235 -13.84441 -13.73487 -13.33320 -13.23403 -12.99943 -12.92597 -12.77379 -12.70651 -12.49791 -12.47847 -12.21295 -12.11242 -11.97731 -11.86380 -11.84650 -11.61696 -11.26042 -11.01551 -10.89514 -10.75999 -10.46641 -9.80092 -9.77643 -9.60364 -8.49935 -7.78752 -5.24501 0.44483 0.52854 1.40151 1.47376 1.50915 1.78476 2.44881 2.52151 2.98746 3.35830 3.61639 3.74793 3.95214 4.01656 4.04939 4.14161 4.17378 4.21841 4.28539 4.33634 4.38970 4.45088 4.54370 4.59168 4.67621 4.69774 4.77613 4.78622 4.87626 4.94168 4.96343 5.06371 5.10750 5.13554 5.14356 5.17115 5.17900 5.26537 5.40459 5.50148 5.55254 5.57168 5.60815 5.62149 5.70199 5.71261 5.75845 5.83383 5.90458 6.14546 6.48668 6.78435 7.24115 7.41925 7.93474 8.46917 9.25087 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.003574 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.770462 B = 7833.528592 C = 9019.791301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.162 3.838 7 H 0.031 0.969 8 C 0.141 3.859 9 N -0.696 5.696 10 C 0.509 3.491 11 O -0.590 6.590 12 C -0.101 4.101 13 C -0.075 4.075 14 C -0.132 4.132 15 C -0.129 4.129 16 C -0.128 4.128 17 C -0.124 4.124 18 C -0.120 4.120 19 N -0.595 5.595 20 C -0.226 4.226 21 H 0.059 0.941 22 C -0.030 4.030 23 N -0.923 5.923 24 Si 0.931 3.069 25 H -0.298 1.298 26 H -0.295 1.295 27 H -0.277 1.277 28 C 0.196 3.804 29 H 0.059 0.941 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.412 0.588 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.137 0.863 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.132 0.868 49 H 0.246 0.754 50 H 0.048 0.952 51 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 -8.345 5.978 10.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.186 4.186 4 C -0.128 4.128 5 C -0.164 4.164 6 C 0.056 3.944 7 H 0.049 0.951 8 C 0.017 3.983 9 N -0.345 5.345 10 C 0.296 3.704 11 O -0.472 6.472 12 C -0.141 4.141 13 C -0.076 4.076 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.145 4.145 17 C -0.142 4.142 18 C -0.138 4.138 19 N -0.318 5.318 20 C -0.357 4.357 21 H 0.077 0.923 22 C -0.226 4.226 23 N -0.569 5.569 24 Si 0.762 3.238 25 H -0.225 1.225 26 H -0.221 1.221 27 H -0.202 1.202 28 C 0.070 3.930 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.249 0.751 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.127 0.873 45 H 0.155 0.845 46 H 0.166 0.834 47 H 0.165 0.835 48 H 0.150 0.850 49 H 0.056 0.944 50 H 0.066 0.934 51 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 0.933 -8.656 6.345 10.773 hybrid contribution -0.471 0.484 -1.635 1.770 sum 0.461 -8.172 4.709 9.444 Atomic orbital electron populations 1.21620 0.95109 1.00936 0.99789 1.21159 0.95776 0.95490 0.96997 1.21705 1.00563 0.95012 1.01328 1.21386 0.99689 0.94927 0.96831 1.21957 1.00867 0.96369 0.97238 1.20848 0.95920 0.89362 0.88291 0.95131 1.21197 0.97893 0.91877 0.87306 1.46032 1.46368 1.14349 1.27791 1.20819 0.81021 0.81680 0.86837 1.90629 1.36416 1.68610 1.51507 1.20692 1.03161 0.93366 0.96833 1.19487 0.95677 0.94187 0.98218 1.21189 0.95595 0.98082 1.00201 1.21377 1.00530 0.92535 1.00226 1.21479 0.95827 0.99624 0.97616 1.21455 0.96163 0.97352 0.99225 1.21234 1.00833 0.92834 0.98881 1.44175 1.65291 1.06220 1.16134 1.19136 1.15116 1.16142 0.85281 0.92317 1.25401 0.97639 1.01210 0.98368 1.70107 1.28338 1.40281 1.18199 0.85825 0.79566 0.77984 0.80427 1.22544 1.22116 1.20235 1.20577 0.94385 0.83364 0.94628 0.92231 0.95295 0.93562 0.93010 0.94033 0.91348 0.90913 0.92704 0.92299 0.90376 0.94105 0.91373 0.75124 0.85736 0.88180 0.87313 0.84466 0.83430 0.83469 0.85038 0.94430 0.93354 0.98692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 7.99 71.98 0.57 -3.44 16 2 C -0.09 -3.14 0.77 -52.10 -0.04 -3.18 16 3 C -0.13 -3.76 8.48 71.98 0.61 -3.15 16 4 C -0.09 -2.64 4.71 30.62 0.14 -2.50 16 5 C -0.12 -3.80 5.03 30.67 0.15 -3.64 16 6 C 0.16 5.89 3.01 44.98 0.14 6.03 16 7 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 8 C 0.14 5.20 4.43 86.38 0.38 5.58 16 9 N -0.70 -25.86 3.86 -463.06 -1.79 -27.65 16 10 C 0.51 18.95 7.82 87.66 0.69 19.64 16 11 O -0.59 -25.67 16.03 -3.04 -0.05 -25.72 16 12 C -0.10 -3.07 5.83 29.10 0.17 -2.90 16 13 C -0.08 -2.28 4.37 -19.86 -0.09 -2.37 16 14 C -0.13 -4.04 9.70 22.27 0.22 -3.83 16 15 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 16 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 17 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 18 C -0.12 -3.15 9.70 22.27 0.22 -2.94 16 19 N -0.59 -26.00 2.41 -675.23 -1.63 -27.63 16 20 C -0.23 -10.99 7.01 84.03 0.59 -10.40 16 21 H 0.06 2.99 5.85 -2.91 -0.02 2.97 16 22 C -0.03 -1.52 4.96 84.86 0.42 -1.10 16 23 N -0.92 -49.97 11.23 21.65 0.24 -49.72 16 24 Si 0.93 43.28 29.58 68.60 2.03 45.31 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 28 C 0.20 8.57 3.95 86.36 0.34 8.91 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 1.75 5.97 -2.39 -0.01 1.74 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.89 6.34 -2.39 -0.02 1.88 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.69 7.39 -2.39 -0.02 1.68 16 40 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.41 15.83 7.43 -92.71 -0.69 15.14 16 42 H 0.12 3.04 8.08 -2.38 -0.02 3.02 16 43 H 0.10 3.09 8.09 -2.39 -0.02 3.07 16 44 H 0.11 3.41 8.06 -2.91 -0.02 3.38 16 45 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 46 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 47 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 48 H 0.13 2.98 8.06 -2.91 -0.02 2.95 16 49 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 50 H 0.05 2.47 6.19 -2.38 -0.01 2.46 16 51 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 Total: -1.00 -61.96 395.84 4.21 -57.76 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.21 Total: 35.11 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.18 Total: -7.45 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -3.17 Total: -105.00 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -61.96 4.21 -57.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099126925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.234 kcal (2) G-P(sol) polarization free energy of solvation -61.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds