Wall clock time and date at job start Tue Mar 31 2020 16:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38238 * 119.99734 * 179.76790 * 4 3 2 6 6 C 1.38242 * 119.99727 * 0.50243 * 5 4 3 7 7 C 1.50701 * 119.99533 * 179.72642 * 6 5 4 8 8 H 1.09005 * 109.46768 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47372 * 300.02265 * 7 6 5 10 10 C 1.50702 * 109.47191 * 60.02600 * 7 6 5 11 11 O 1.21281 * 120.00041 * 359.97438 * 10 7 6 12 12 N 1.34772 * 119.99885 * 179.97438 * 10 7 6 13 13 C 1.46502 * 120.00064 * 180.02562 * 12 10 7 14 14 C 1.52995 * 109.47274 * 180.02562 * 13 12 10 15 15 C 1.53781 * 113.61311 * 274.13289 * 14 13 12 16 16 C 1.53960 * 87.02157 * 220.04851 * 15 14 13 17 17 N 1.46505 * 113.53651 * 270.81533 * 16 15 14 18 18 C 1.36933 * 119.99822 * 252.49385 * 17 16 15 19 19 H 1.08007 * 119.99871 * 359.97438 * 18 17 16 20 20 C 1.38815 * 120.00162 * 180.02562 * 18 17 16 21 21 N 1.31612 * 119.99518 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00119 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47221 * 90.00199 * 22 20 18 24 24 H 1.48503 * 109.47070 * 209.99910 * 22 20 18 25 25 H 1.48505 * 109.47317 * 329.99824 * 22 20 18 26 26 C 1.53785 * 113.61243 * 176.52667 * 14 13 12 27 27 C 1.38232 * 120.00050 * 359.75101 * 6 5 4 28 28 C 1.38233 * 119.99928 * 359.97438 * 27 6 5 29 29 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 34 34 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.00134 * 180.23585 * 5 4 3 36 36 H 1.08998 * 109.47475 * 300.00445 * 9 7 6 37 37 H 1.09005 * 109.47027 * 60.00338 * 9 7 6 38 38 H 1.09001 * 109.46877 * 180.02562 * 9 7 6 39 39 H 0.96996 * 120.00245 * 0.02562 * 12 10 7 40 40 H 1.09005 * 109.46969 * 300.00063 * 13 12 10 41 41 H 1.09000 * 109.47182 * 59.99666 * 13 12 10 42 42 H 1.09001 * 112.85184 * 45.33578 * 14 13 12 43 43 H 1.08999 * 113.61600 * 334.56851 * 15 14 13 44 44 H 1.09000 * 113.60924 * 105.47090 * 15 14 13 45 45 H 1.08996 * 113.74355 * 139.94307 * 16 15 14 46 46 H 0.97002 * 120.00074 * 72.49114 * 17 16 15 47 47 H 0.97004 * 119.99741 * 179.97438 * 21 20 18 48 48 H 1.08999 * 113.61235 * 254.52283 * 26 14 13 49 49 H 1.08992 * 113.61719 * 25.43551 * 26 14 13 50 50 H 1.08002 * 119.99819 * 179.97438 * 27 6 5 51 51 H 1.08003 * 119.99863 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9547 4.0272 0.0002 7 6 3.4579 5.4477 0.0001 8 1 3.5793 5.7901 1.0278 9 6 4.8057 5.5113 -0.7211 10 6 2.4657 6.3321 -0.7102 11 8 1.4502 5.8557 -1.1715 12 7 2.7069 7.6523 -0.8329 13 6 1.7422 8.5122 -1.5229 14 6 2.2532 9.9543 -1.5231 15 6 1.8801 10.7402 -0.2549 16 6 1.6141 11.9445 -1.1765 17 7 2.7966 12.7785 -1.4054 18 6 2.8870 14.0134 -0.8208 19 1 2.0863 14.3728 -0.1912 20 6 4.0072 14.8039 -1.0381 21 7 4.9826 14.3661 -1.8056 22 14 4.1302 16.4888 -0.2411 23 1 4.7839 16.3621 1.0862 24 1 4.9360 17.3878 -1.1059 25 1 2.7685 17.0562 -0.0702 26 6 1.3506 10.9276 -2.2997 27 6 2.7239 3.3756 1.1972 28 6 2.2623 2.0726 1.1972 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0926 1.5599 -2.1324 35 1 2.9048 3.8845 -2.1324 36 1 5.5233 4.8716 -0.2074 37 1 4.6843 5.1688 -1.7489 38 1 5.1698 6.5387 -0.7207 39 1 3.5193 8.0333 -0.4644 40 1 1.6207 8.1701 -2.5508 41 1 0.7821 8.4666 -1.0089 42 1 3.3075 10.0298 -1.7893 43 1 0.9859 10.3658 0.2435 44 1 2.7162 10.8885 0.4285 45 1 0.7345 12.5246 -0.8976 46 1 3.5155 12.4558 -1.9711 47 1 5.7652 14.9187 -1.9578 48 1 1.7599 11.2271 -3.2645 49 1 0.3115 10.6047 -2.3613 50 1 2.9043 3.8846 2.1326 51 1 2.0824 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100758774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:09 Heat of formation + Delta-G solvation = -3.900819 kcal Electronic energy + Delta-G solvation = -27172.376360 eV Core-core repulsion = 23457.468531 eV Total energy + Delta-G solvation = -3714.907829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.47996 -39.24813 -38.42337 -35.32045 -34.64840 -33.31706 -32.72115 -31.07324 -30.18364 -28.82915 -27.32138 -25.11331 -25.04770 -23.85539 -23.14926 -22.90081 -21.71206 -21.00142 -19.96356 -18.39744 -17.46437 -16.96618 -16.76435 -15.87608 -15.78615 -15.31827 -15.09085 -14.83727 -14.30473 -14.24238 -13.99272 -13.92359 -13.71905 -13.46059 -13.39482 -13.29627 -12.96718 -12.87896 -12.53525 -12.27972 -12.05936 -11.93147 -11.86192 -11.70112 -11.44396 -11.35217 -11.06745 -10.99738 -10.97967 -10.85786 -10.49990 -10.20307 -10.07130 -9.73052 -9.71136 -9.45649 -9.02016 -8.96670 -8.89821 -8.67225 -7.02525 -5.83292 -3.12226 1.15622 1.30527 2.63599 3.17277 3.40005 3.45600 3.47106 3.66850 4.32443 4.51080 4.53632 4.56612 4.67813 4.82736 4.86330 4.97143 5.02747 5.05906 5.06503 5.10554 5.22588 5.24908 5.30647 5.35755 5.43167 5.44474 5.55701 5.57924 5.61794 5.67075 5.69971 5.82378 5.84334 5.86954 5.92078 5.94802 5.96316 6.10258 6.20020 6.26967 6.35552 6.43557 6.45839 6.47887 6.58042 6.72421 6.86302 6.88615 7.02394 7.53029 7.66758 8.23227 8.35916 9.46683 10.04174 10.38481 11.39122 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.001785 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.654394 B =15685.211689 C =16004.596938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.084 4.084 4 C -0.120 4.120 5 C -0.080 4.080 6 C -0.069 4.069 7 C -0.073 4.073 8 H 0.104 0.896 9 C -0.141 4.141 10 C 0.514 3.486 11 O -0.537 6.537 12 N -0.723 5.723 13 C 0.131 3.869 14 C -0.119 4.119 15 C -0.168 4.168 16 C 0.167 3.833 17 N -0.705 5.705 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.148 4.148 27 C -0.109 4.109 28 C -0.122 4.122 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 -27.482 3.849 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.084 4.084 4 C -0.138 4.138 5 C -0.098 4.098 6 C -0.069 4.069 7 C -0.094 4.094 8 H 0.122 0.878 9 C -0.199 4.199 10 C 0.300 3.700 11 O -0.413 6.413 12 N -0.374 5.374 13 C 0.008 3.992 14 C -0.138 4.138 15 C -0.209 4.209 16 C 0.055 3.945 17 N -0.344 5.344 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.188 4.188 27 C -0.127 4.127 28 C -0.140 4.140 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.236 0.764 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.407 -27.602 3.576 28.180 hybrid contribution 0.788 1.063 0.456 1.400 sum -3.619 -26.539 4.032 27.087 Atomic orbital electron populations 1.21750 0.94733 1.01543 1.02425 1.20533 0.96221 0.92758 1.02618 1.19872 0.99095 0.96210 0.93263 1.20964 1.00509 0.94921 0.97431 1.20878 0.97333 0.93979 0.97569 1.19285 1.00175 0.93867 0.93602 1.20308 0.95356 0.92191 1.01566 0.87831 1.21805 0.94317 1.02953 1.00820 1.20449 0.87130 0.82520 0.79924 1.90712 1.27857 1.74322 1.48432 1.46065 1.25028 1.07625 1.58718 1.21463 0.91868 0.89220 0.96622 1.22701 1.00388 0.91094 0.99586 1.23909 1.00749 0.99782 0.96486 1.21100 0.91331 0.89520 0.92588 1.42166 1.18192 1.16323 1.57715 1.19298 1.02367 0.92539 1.23180 0.90993 1.24758 0.96875 0.98894 1.00324 1.69659 1.08888 1.37790 1.41715 0.86168 0.77437 0.83922 0.78525 1.21695 1.21748 1.20692 1.23438 0.98677 0.97200 0.99441 1.20978 0.99604 0.94957 0.97186 1.20909 1.00760 0.94895 0.97412 0.92538 0.92509 0.92461 0.91199 0.91171 0.86330 0.86373 0.91199 0.91836 0.91411 0.76372 0.91949 0.91693 0.88932 0.91460 0.91526 0.91967 0.78124 0.93448 0.91334 0.90498 0.86180 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.59 6.07 -27.88 -0.17 -0.75 16 3 C -0.08 -0.79 5.13 -104.62 -0.54 -1.32 16 4 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 5 C -0.08 -0.89 7.93 -39.58 -0.31 -1.21 16 6 C -0.07 -0.74 4.40 -104.62 -0.46 -1.20 16 7 C -0.07 -0.71 2.90 -92.92 -0.27 -0.98 16 8 H 0.10 0.84 7.88 -51.93 -0.41 0.43 16 9 C -0.14 -1.13 8.90 37.16 0.33 -0.80 16 10 C 0.51 6.55 7.02 -10.99 -0.08 6.47 16 11 O -0.54 -8.81 15.11 5.56 0.08 -8.73 16 12 N -0.72 -8.57 5.45 -60.29 -0.33 -8.90 16 13 C 0.13 1.74 5.50 -4.04 -0.02 1.72 16 14 C -0.12 -1.74 3.62 -89.81 -0.33 -2.06 16 15 C -0.17 -2.74 7.44 -25.82 -0.19 -2.94 16 16 C 0.17 3.21 4.57 -67.02 -0.31 2.90 16 17 N -0.71 -17.13 5.31 -52.54 -0.28 -17.41 16 18 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 19 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 22 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 C -0.15 -2.34 7.39 -25.91 -0.19 -2.53 16 27 C -0.11 -1.07 9.67 -39.59 -0.38 -1.46 16 28 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.33 7.52 -52.49 -0.39 0.94 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.54 7.39 -51.93 -0.38 0.15 16 38 H 0.07 0.49 7.57 -51.93 -0.39 0.10 16 39 H 0.40 4.08 7.89 -40.82 -0.32 3.76 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 42 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 46 H 0.38 9.87 7.90 -40.82 -0.32 9.54 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 50 H 0.12 0.95 7.95 -52.49 -0.42 0.54 16 51 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 LS Contribution 414.75 15.07 6.25 6.25 Total: -1.00 -31.81 414.75 -11.05 -42.86 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -8.92 Total: 10.85 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.56 Total: -15.10 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.12 Total: -53.09 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.81 -11.05 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100758774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.957 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds