Wall clock time and date at job start Tue Mar 31 2020 16:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99592 * 179.73993 * 4 3 2 6 6 C 1.38241 * 119.99852 * 0.53370 * 5 4 3 7 7 C 1.50695 * 119.99646 * 179.76763 * 6 5 4 8 8 H 1.09005 * 109.47156 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47434 * 59.97495 * 7 6 5 10 10 C 1.50706 * 109.47021 * 299.97375 * 7 6 5 11 11 O 1.21281 * 120.00084 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99805 * 180.02562 * 10 7 6 13 13 C 1.46503 * 119.99838 * 179.97438 * 12 10 7 14 14 C 1.52996 * 109.46980 * 180.02562 * 13 12 10 15 15 C 1.53785 * 113.61533 * 274.13545 * 14 13 12 16 16 C 1.53956 * 87.01998 * 220.04774 * 15 14 13 17 17 N 1.46497 * 113.53635 * 270.81034 * 16 15 14 18 18 C 1.36943 * 119.99748 * 252.49222 * 17 16 15 19 19 H 1.07996 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99610 * 180.02562 * 18 17 16 21 21 N 1.31615 * 120.00274 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99692 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46947 * 90.00152 * 22 20 18 24 24 H 1.48494 * 109.46849 * 210.00223 * 22 20 18 25 25 H 1.48495 * 109.47055 * 330.00006 * 22 20 18 26 26 C 1.53776 * 113.61446 * 176.52773 * 14 13 12 27 27 C 1.38230 * 120.00019 * 359.73821 * 6 5 4 28 28 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 34 34 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 35 35 H 1.07996 * 119.99701 * 180.29484 * 5 4 3 36 36 H 1.09001 * 109.46586 * 299.99974 * 9 7 6 37 37 H 1.08992 * 109.46880 * 59.99812 * 9 7 6 38 38 H 1.09001 * 109.47002 * 180.02562 * 9 7 6 39 39 H 0.97003 * 120.00015 * 0.02562 * 12 10 7 40 40 H 1.09000 * 109.47271 * 299.99886 * 13 12 10 41 41 H 1.08994 * 109.47096 * 60.00308 * 13 12 10 42 42 H 1.09006 * 112.85001 * 45.33216 * 14 13 12 43 43 H 1.08997 * 113.61262 * 334.56979 * 15 14 13 44 44 H 1.09004 * 113.61189 * 105.46994 * 15 14 13 45 45 H 1.09003 * 113.73604 * 139.94003 * 16 15 14 46 46 H 0.96994 * 119.99887 * 72.49844 * 17 16 15 47 47 H 0.96999 * 119.99980 * 179.97438 * 21 20 18 48 48 H 1.09004 * 113.62216 * 254.52760 * 26 14 13 49 49 H 1.08999 * 113.61661 * 25.43683 * 26 14 13 50 50 H 1.07997 * 119.99935 * 179.97438 * 27 6 5 51 51 H 1.07999 * 119.99681 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7238 3.3757 -1.1973 6 6 2.9542 4.0273 -0.0001 7 6 3.4560 5.4483 -0.0002 8 1 3.5768 5.7911 1.0275 9 6 2.4480 6.3451 -0.7217 10 6 4.7837 5.5122 -0.7104 11 8 5.2739 4.5032 -1.1715 12 7 5.4262 6.6905 -0.8331 13 6 6.7172 6.7525 -1.5230 14 6 7.2271 8.1950 -1.5221 15 6 6.6876 9.0399 -2.6883 16 6 8.0966 9.6516 -2.7914 17 7 8.2821 10.8382 -1.9525 18 6 8.3576 12.0785 -2.5279 19 1 8.2800 12.1820 -3.6001 20 6 8.5339 13.2028 -1.7330 21 7 8.6290 13.0766 -0.4264 22 14 8.6362 14.8949 -2.5179 23 1 7.2746 15.4802 -2.6116 24 1 9.4971 15.7745 -1.6872 25 1 9.2182 14.7749 -3.8788 26 6 8.6213 8.3559 -2.1506 27 6 2.7238 3.3757 1.1971 28 6 2.2627 2.0726 1.1971 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.0927 1.5597 -2.1324 35 1 2.9035 3.8848 -2.1326 36 1 2.3272 6.0024 -1.7493 37 1 1.4878 6.2989 -0.2080 38 1 2.8112 7.3729 -0.7221 39 1 5.0343 7.4974 -0.4640 40 1 7.4350 6.1135 -1.0088 41 1 6.5967 6.4100 -2.5507 42 1 7.1279 8.6784 -0.5501 43 1 6.4028 8.4501 -3.5595 44 1 5.9207 9.7552 -2.3910 45 1 8.4364 9.8005 -3.8164 46 1 8.3515 10.7452 -0.9895 47 1 8.7525 13.8622 0.1290 48 1 9.4135 8.5199 -1.4200 49 1 8.8662 7.5788 -2.8746 50 1 2.9042 3.8847 2.1323 51 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100758775.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:11 Heat of formation + Delta-G solvation = -21.082261 kcal Electronic energy + Delta-G solvation = -27155.701434 eV Core-core repulsion = 23440.048561 eV Total energy + Delta-G solvation = -3715.652872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.38819 -40.28813 -39.60140 -36.11974 -35.90790 -34.96798 -33.49213 -32.01446 -31.79563 -29.58433 -28.53516 -26.43649 -25.96817 -25.52400 -24.04176 -23.65094 -22.95818 -21.79742 -20.89840 -19.76387 -19.32387 -18.06558 -17.61959 -16.89237 -16.66556 -16.49632 -16.17419 -15.95058 -15.73310 -15.55783 -14.97544 -14.74933 -14.68313 -14.58136 -14.49924 -14.29686 -13.98262 -13.75252 -13.37982 -13.31656 -13.26803 -12.94918 -12.93298 -12.87869 -12.62418 -12.50636 -12.29208 -12.16446 -12.06076 -12.01184 -11.64467 -11.62694 -11.52241 -11.46993 -10.98827 -10.86749 -10.65180 -10.03714 -9.75492 -9.40057 -8.99278 -7.95024 -5.23140 0.41956 0.55832 1.48732 1.49515 1.58100 1.65108 2.22929 2.56163 2.90679 3.37742 3.57970 3.69871 3.75737 3.80500 3.88821 3.94633 4.03161 4.13356 4.16480 4.19684 4.27961 4.33053 4.40786 4.42278 4.53040 4.58897 4.69208 4.72640 4.73618 4.77431 4.83079 4.91671 4.92946 4.99566 5.06732 5.09544 5.11745 5.17026 5.22498 5.25748 5.30539 5.36231 5.39204 5.49995 5.54332 5.56856 5.66742 5.72271 5.75851 6.15023 6.28615 6.57479 7.25804 7.33889 8.10924 8.33446 9.28125 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031042 B = 0.001759 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.781298 B =15910.051060 C =16195.576459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.098 4.098 6 C -0.085 4.085 7 C -0.066 4.066 8 H 0.124 0.876 9 C -0.137 4.137 10 C 0.514 3.486 11 O -0.576 6.576 12 N -0.717 5.717 13 C 0.141 3.859 14 C -0.101 4.101 15 C -0.151 4.151 16 C 0.143 3.857 17 N -0.719 5.719 18 C -0.243 4.243 19 H 0.076 0.924 20 C -0.073 4.073 21 N -0.968 5.968 22 Si 0.972 3.028 23 H -0.287 1.287 24 H -0.297 1.297 25 H -0.270 1.270 26 C -0.136 4.136 27 C -0.118 4.118 28 C -0.128 4.128 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.412 0.588 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.059 0.941 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.057 0.943 49 H 0.103 0.897 50 H 0.139 0.861 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.049 -24.127 2.353 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.152 4.152 5 C -0.116 4.116 6 C -0.085 4.085 7 C -0.087 4.087 8 H 0.142 0.858 9 C -0.195 4.195 10 C 0.301 3.699 11 O -0.456 6.456 12 N -0.368 5.368 13 C 0.017 3.983 14 C -0.119 4.119 15 C -0.192 4.192 16 C 0.033 3.967 17 N -0.357 5.357 18 C -0.375 4.375 19 H 0.094 0.906 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.195 1.195 26 C -0.175 4.175 27 C -0.135 4.135 28 C -0.146 4.146 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.248 0.752 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.121 0.879 50 H 0.157 0.843 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.659 -24.678 1.870 29.833 hybrid contribution 0.282 1.570 0.193 1.607 sum -16.377 -23.108 2.063 28.398 Atomic orbital electron populations 1.21719 0.93997 1.02380 1.01914 1.20582 0.96710 0.91457 1.03395 1.20175 0.98603 0.97179 0.92991 1.21174 1.00789 0.94774 0.98425 1.20945 0.97862 0.95220 0.97555 1.19466 1.00240 0.94958 0.93835 1.20329 0.91675 0.94374 1.02345 0.85782 1.21795 0.98701 0.98717 1.00252 1.20976 0.86961 0.82702 0.79278 1.90693 1.68917 1.35764 1.50222 1.46005 1.22127 1.10458 1.58243 1.21253 0.84119 0.95927 0.96955 1.22476 0.97063 0.93635 0.98756 1.23715 0.98868 0.98626 0.97966 1.21425 0.94969 0.86084 0.94206 1.42284 1.86187 1.01628 1.05604 1.19673 1.40263 0.85213 0.92364 0.90607 1.25522 1.03598 1.01477 0.95964 1.69805 1.58584 1.29352 1.04117 0.85165 0.77207 0.79973 0.77567 1.21432 1.22333 1.19536 1.23348 0.95724 0.98169 1.00276 1.21267 0.99398 0.95297 0.97586 1.21233 1.00299 0.94813 0.98277 0.91161 0.93102 0.92641 0.90200 0.90828 0.85472 0.87434 0.92759 0.89897 0.90513 0.75225 0.92301 0.91696 0.89966 0.89220 0.93126 0.92311 0.79341 0.94041 0.92428 0.87863 0.84339 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.08 -1.05 6.07 29.85 0.18 -0.87 16 3 C -0.09 -1.57 5.13 -19.86 -0.10 -1.68 16 4 C -0.13 -2.69 9.70 22.27 0.22 -2.47 16 5 C -0.10 -2.21 7.93 22.27 0.18 -2.03 16 6 C -0.08 -1.76 4.40 -19.87 -0.09 -1.85 16 7 C -0.07 -1.20 2.90 -12.28 -0.04 -1.23 16 8 H 0.12 1.71 7.88 -2.38 -0.02 1.69 16 9 C -0.14 -2.01 8.90 71.98 0.64 -1.37 16 10 C 0.51 12.60 7.02 87.66 0.62 13.21 16 11 O -0.58 -18.81 15.11 -3.03 -0.05 -18.86 16 12 N -0.72 -15.99 5.45 -463.06 -2.52 -18.51 16 13 C 0.14 3.53 5.50 86.38 0.47 4.00 16 14 C -0.10 -2.81 3.62 -10.27 -0.04 -2.84 16 15 C -0.15 -4.69 7.44 31.18 0.23 -4.45 16 16 C 0.14 5.39 4.57 45.58 0.21 5.60 16 17 N -0.72 -35.09 5.31 -320.16 -1.70 -36.79 16 18 C -0.24 -13.24 9.97 84.03 0.84 -12.40 16 19 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 21 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 22 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C -0.14 -4.12 7.39 31.12 0.23 -3.89 16 27 C -0.12 -2.14 9.67 22.27 0.22 -1.92 16 28 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 33 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 34 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.11 2.54 7.52 -2.91 -0.02 2.52 16 36 H 0.05 0.90 7.39 -2.39 -0.02 0.88 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.98 7.57 -2.39 -0.02 0.96 16 39 H 0.41 7.66 7.89 -92.71 -0.73 6.93 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 41 H 0.06 1.67 7.88 -2.39 -0.02 1.65 16 42 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 43 H 0.09 2.41 7.92 -2.39 -0.02 2.39 16 44 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 46 H 0.37 19.56 7.90 -92.71 -0.73 18.83 16 47 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 48 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.10 2.61 8.10 -2.39 -0.02 2.59 16 50 H 0.14 1.89 7.95 -2.91 -0.02 1.86 16 51 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -68.70 414.75 2.65 -66.05 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.55 Total: 39.07 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 5.16 Total: -20.60 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -3.94 Total: -113.05 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.70 2.65 -66.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100758775.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.966 kcal (2) G-P(sol) polarization free energy of solvation -68.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds