Wall clock time and date at job start Tue Mar 31 2020 16:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47400 * 2 1 4 4 C 1.38235 * 119.99800 * 90.00330 * 3 2 1 5 5 C 1.38234 * 119.99836 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00071 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00111 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47300 * 89.99479 * 7 6 5 9 9 C 1.50706 * 109.46925 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00072 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47551 * 180.02562 * 12 11 9 14 14 C 1.53781 * 113.61636 * 274.14060 * 13 12 11 15 15 C 1.53959 * 87.02126 * 220.04532 * 14 13 12 16 16 N 1.46494 * 113.74361 * 139.94099 * 15 14 13 17 17 C 1.36934 * 119.99834 * 107.40522 * 16 15 14 18 18 H 1.07998 * 120.00054 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99888 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99982 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99860 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47292 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47016 * 120.00239 * 21 19 17 24 24 H 1.48499 * 109.46969 * 239.99863 * 21 19 17 25 25 C 1.53776 * 113.61612 * 176.52904 * 13 12 11 26 26 C 1.38233 * 119.99872 * 0.24890 * 6 5 4 27 27 C 1.38232 * 120.00093 * 359.49739 * 26 6 5 28 28 H 1.09009 * 109.47118 * 300.00208 * 1 2 3 29 29 H 1.09000 * 109.47077 * 59.99805 * 1 2 3 30 30 H 1.08992 * 109.47541 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46839 * 239.99674 * 2 1 3 32 32 H 1.09000 * 109.47077 * 120.00195 * 2 1 3 33 33 H 1.07997 * 120.00188 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.00104 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47043 * 329.99653 * 7 6 5 36 36 H 1.09004 * 109.47476 * 209.99727 * 7 6 5 37 37 H 1.09000 * 109.46497 * 60.00269 * 8 7 6 38 38 H 1.09000 * 109.47312 * 300.00049 * 8 7 6 39 39 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.47024 * 300.00478 * 12 11 9 41 41 H 1.09004 * 109.46875 * 60.00324 * 12 11 9 42 42 H 1.09005 * 112.84727 * 45.33723 * 13 12 11 43 43 H 1.08997 * 113.61207 * 334.56725 * 14 13 12 44 44 H 1.08998 * 113.61494 * 105.46713 * 14 13 12 45 45 H 1.08999 * 113.53503 * 270.81324 * 15 14 13 46 46 H 0.97001 * 120.00165 * 287.40638 * 16 15 14 47 47 H 0.97002 * 119.99479 * 180.02562 * 20 19 17 48 48 H 1.08999 * 113.62106 * 254.52893 * 25 13 12 49 49 H 1.08995 * 113.61568 * 25.43614 * 25 13 12 50 50 H 1.07997 * 119.99665 * 179.73277 * 26 6 5 51 51 H 1.07994 * 120.00542 * 180.25748 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0723 1.1972 5 6 2.7242 3.3754 1.1972 6 6 2.9545 4.0271 0.0000 7 6 3.4569 5.4479 0.0000 8 6 4.9870 5.4478 0.0001 9 6 5.4893 6.8687 0.0007 10 8 4.7012 7.7905 0.0015 11 7 6.8144 7.1150 0.0014 12 6 7.3028 8.4961 0.0014 13 6 8.8327 8.4961 0.0016 14 6 9.4486 8.3944 1.4070 15 6 10.4951 9.4204 0.9351 16 7 10.8351 10.4239 1.9467 17 6 12.0497 10.3761 2.5773 18 1 12.7567 9.5983 2.3293 19 6 12.3721 11.3274 3.5355 20 7 11.5106 12.2755 3.8375 21 14 14.0287 11.2617 4.3963 22 1 14.8087 10.1078 3.8815 23 1 14.7730 12.5196 4.1339 24 1 13.8209 11.1053 5.8584 25 6 9.4488 9.9025 -0.0836 26 6 2.7187 3.3774 -1.1971 27 6 2.2623 2.0726 -1.1972 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0825 1.5634 2.1325 34 1 2.9039 3.8847 2.1325 35 1 3.0936 5.9617 0.8900 36 1 3.0936 5.9618 -0.8900 37 1 5.3502 4.9340 -0.8900 38 1 5.3503 4.9340 0.8901 39 1 7.4447 6.3777 0.0011 40 1 6.9399 9.0098 -0.8888 41 1 6.9390 9.0101 0.8912 42 1 9.2560 7.7900 -0.7128 43 1 8.7970 8.7672 2.1972 44 1 9.8676 7.4132 1.6302 45 1 11.3738 8.9665 0.4769 46 1 10.1999 11.1222 2.1698 47 1 11.7362 12.9404 4.5068 48 1 9.8679 10.1371 -1.0621 49 1 8.7973 10.6884 0.2983 50 1 2.8945 3.8880 -2.1323 51 1 2.0820 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100973764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:15 Heat of formation + Delta-G solvation = -11.926870 kcal Electronic energy + Delta-G solvation = -26148.872779 eV Core-core repulsion = 22433.616914 eV Total energy + Delta-G solvation = -3715.255865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.14722 -39.59450 -38.45036 -35.51006 -34.65547 -33.29983 -32.79544 -31.23719 -30.35755 -29.33872 -27.34272 -25.15720 -25.05638 -23.81571 -23.05101 -22.80493 -21.05467 -20.81892 -20.32358 -19.04421 -17.32123 -17.01103 -16.36477 -16.27958 -16.01528 -15.54394 -15.38746 -14.86601 -14.75286 -14.21979 -14.18318 -13.87009 -13.80099 -13.57211 -13.51444 -13.45446 -13.02546 -12.75533 -12.66021 -12.16543 -11.91237 -11.84125 -11.81102 -11.74211 -11.40415 -11.33051 -11.23540 -11.13289 -11.07163 -10.86156 -10.53012 -10.26067 -10.11978 -9.84612 -9.83545 -9.49091 -9.22909 -9.01746 -8.88036 -8.80707 -6.97172 -5.79364 -3.08217 0.99647 1.09670 2.60293 3.13733 3.41630 3.44887 3.47207 3.49603 4.32639 4.42262 4.49007 4.57440 4.67493 4.69291 4.76193 4.89384 4.91448 4.93559 4.98095 5.06325 5.11478 5.18458 5.19698 5.22796 5.33890 5.45890 5.46234 5.50991 5.51288 5.56694 5.67255 5.77263 5.80516 5.82479 5.85319 5.91889 5.93492 6.08419 6.11729 6.26260 6.29426 6.31250 6.35464 6.35617 6.46223 6.58475 6.70343 6.82232 7.10551 7.47317 7.68585 8.19159 8.39203 9.50345 10.08738 10.42875 11.43095 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.001479 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.844964 B =18930.858227 C =19489.753163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.088 4.088 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.085 4.085 7 C -0.065 4.065 8 C -0.134 4.134 9 C 0.508 3.492 10 O -0.544 6.544 11 N -0.726 5.726 12 C 0.131 3.869 13 C -0.127 4.127 14 C -0.161 4.161 15 C 0.165 3.835 16 N -0.713 5.713 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.142 4.142 26 C -0.113 4.113 27 C -0.117 4.117 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.400 0.600 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.061 0.939 49 H 0.080 0.920 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.294 -24.474 -11.314 33.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.085 4.085 7 C -0.103 4.103 8 C -0.174 4.174 9 C 0.294 3.706 10 O -0.422 6.422 11 N -0.377 5.377 12 C 0.008 3.992 13 C -0.146 4.146 14 C -0.202 4.202 15 C 0.053 3.947 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.182 4.182 26 C -0.131 4.131 27 C -0.135 4.135 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.234 0.766 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.649 -23.789 -11.224 33.441 hybrid contribution 1.019 -0.135 0.630 1.206 sum -19.630 -23.924 -10.595 32.710 Atomic orbital electron populations 1.21749 0.94726 1.01688 1.02261 1.20541 0.96193 0.92734 1.02802 1.19898 0.99406 0.96266 0.93267 1.21022 0.99973 0.94910 0.97513 1.21090 0.99424 0.94768 0.97755 1.19913 0.99326 0.96040 0.93208 1.20328 0.93239 0.92130 1.04581 1.21651 0.96933 0.94198 1.04651 1.20682 0.82379 0.91487 0.76007 1.90711 1.55325 1.46570 1.49590 1.46088 1.06887 1.09589 1.75159 1.21427 0.93737 0.81988 1.02044 1.22634 0.92550 0.99643 0.99809 1.23969 1.00597 1.00995 0.94646 1.21555 0.93304 0.90260 0.89552 1.42417 1.17943 1.31360 1.43336 1.19355 0.93125 1.09655 1.15418 0.91036 1.24771 0.98328 0.97801 1.00002 1.69675 1.35120 1.17298 1.35886 0.86123 0.83550 0.77219 0.79326 1.20527 1.21833 1.21859 1.23443 0.99308 0.95061 1.00409 1.21061 0.99627 0.94753 0.97670 1.21007 1.00124 0.94886 0.97478 0.92536 0.92570 0.92418 0.91109 0.91081 0.86207 0.85951 0.90109 0.90188 0.88888 0.88771 0.76594 0.91861 0.91277 0.89428 0.90391 0.92791 0.90693 0.78066 0.93491 0.92004 0.90114 0.86045 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.16 0.37 -0.35 16 2 C -0.09 -0.46 6.06 -27.89 -0.17 -0.62 16 3 C -0.09 -0.64 5.13 -104.62 -0.54 -1.17 16 4 C -0.12 -0.87 9.70 -39.58 -0.38 -1.25 16 5 C -0.11 -0.90 9.70 -39.58 -0.38 -1.29 16 6 C -0.08 -0.70 5.13 -104.63 -0.54 -1.24 16 7 C -0.07 -0.57 4.63 -27.88 -0.13 -0.70 16 8 C -0.13 -1.10 5.68 -27.88 -0.16 -1.26 16 9 C 0.51 6.02 7.83 -10.98 -0.09 5.93 16 10 O -0.54 -8.72 15.98 5.56 0.09 -8.63 16 11 N -0.73 -7.89 5.56 -60.30 -0.33 -8.23 16 12 C 0.13 1.71 5.50 -4.05 -0.02 1.69 16 13 C -0.13 -1.67 3.75 -89.81 -0.34 -2.01 16 14 C -0.16 -2.63 7.45 -25.82 -0.19 -2.82 16 15 C 0.17 3.18 4.48 -67.02 -0.30 2.88 16 16 N -0.71 -17.76 5.41 -52.55 -0.28 -18.05 16 17 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 21 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 C -0.14 -2.25 7.40 -25.92 -0.19 -2.45 16 26 C -0.11 -0.88 9.70 -39.59 -0.38 -1.26 16 27 C -0.12 -0.85 9.70 -39.58 -0.38 -1.23 16 28 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 36 H 0.08 0.75 8.04 -51.93 -0.42 0.34 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 3.32 8.47 -40.82 -0.35 2.97 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 46 H 0.39 10.25 7.92 -40.82 -0.32 9.92 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 50 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 51 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 420.36 15.07 6.33 6.33 Total: -1.00 -32.71 420.36 -11.62 -44.33 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -9.05 Total: 8.98 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -4.07 Total: -14.53 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.11 Total: -53.73 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.71 -11.62 -44.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100973764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.401 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds