Wall clock time and date at job start Tue Mar 31 2020 16:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47400 * 2 1 4 4 C 1.38235 * 119.99800 * 90.00330 * 3 2 1 5 5 C 1.38234 * 119.99836 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00071 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00111 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47300 * 89.99479 * 7 6 5 9 9 C 1.50706 * 109.46925 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00072 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47551 * 180.02562 * 12 11 9 14 14 C 1.53781 * 113.61636 * 274.14060 * 13 12 11 15 15 C 1.53959 * 87.02126 * 220.04532 * 14 13 12 16 16 N 1.46494 * 113.74361 * 139.94099 * 15 14 13 17 17 C 1.36934 * 119.99834 * 107.40522 * 16 15 14 18 18 H 1.07998 * 120.00054 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99888 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99982 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99860 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47292 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47016 * 120.00239 * 21 19 17 24 24 H 1.48499 * 109.46969 * 239.99863 * 21 19 17 25 25 C 1.53776 * 113.61612 * 176.52904 * 13 12 11 26 26 C 1.38233 * 119.99872 * 0.24890 * 6 5 4 27 27 C 1.38232 * 120.00093 * 359.49739 * 26 6 5 28 28 H 1.09009 * 109.47118 * 300.00208 * 1 2 3 29 29 H 1.09000 * 109.47077 * 59.99805 * 1 2 3 30 30 H 1.08992 * 109.47541 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46839 * 239.99674 * 2 1 3 32 32 H 1.09000 * 109.47077 * 120.00195 * 2 1 3 33 33 H 1.07997 * 120.00188 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.00104 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47043 * 329.99653 * 7 6 5 36 36 H 1.09004 * 109.47476 * 209.99727 * 7 6 5 37 37 H 1.09000 * 109.46497 * 60.00269 * 8 7 6 38 38 H 1.09000 * 109.47312 * 300.00049 * 8 7 6 39 39 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.47024 * 300.00478 * 12 11 9 41 41 H 1.09004 * 109.46875 * 60.00324 * 12 11 9 42 42 H 1.09005 * 112.84727 * 45.33723 * 13 12 11 43 43 H 1.08997 * 113.61207 * 334.56725 * 14 13 12 44 44 H 1.08998 * 113.61494 * 105.46713 * 14 13 12 45 45 H 1.08999 * 113.53503 * 270.81324 * 15 14 13 46 46 H 0.97001 * 120.00165 * 287.40638 * 16 15 14 47 47 H 0.97002 * 119.99479 * 180.02562 * 20 19 17 48 48 H 1.08999 * 113.62106 * 254.52893 * 25 13 12 49 49 H 1.08995 * 113.61568 * 25.43614 * 25 13 12 50 50 H 1.07997 * 119.99665 * 179.73277 * 26 6 5 51 51 H 1.07994 * 120.00542 * 180.25748 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0723 1.1972 5 6 2.7242 3.3754 1.1972 6 6 2.9545 4.0271 0.0000 7 6 3.4569 5.4479 0.0000 8 6 4.9870 5.4478 0.0001 9 6 5.4893 6.8687 0.0007 10 8 4.7012 7.7905 0.0015 11 7 6.8144 7.1150 0.0014 12 6 7.3028 8.4961 0.0014 13 6 8.8327 8.4961 0.0016 14 6 9.4486 8.3944 1.4070 15 6 10.4951 9.4204 0.9351 16 7 10.8351 10.4239 1.9467 17 6 12.0497 10.3761 2.5773 18 1 12.7567 9.5983 2.3293 19 6 12.3721 11.3274 3.5355 20 7 11.5106 12.2755 3.8375 21 14 14.0287 11.2617 4.3963 22 1 14.8087 10.1078 3.8815 23 1 14.7730 12.5196 4.1339 24 1 13.8209 11.1053 5.8584 25 6 9.4488 9.9025 -0.0836 26 6 2.7187 3.3774 -1.1971 27 6 2.2623 2.0726 -1.1972 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0825 1.5634 2.1325 34 1 2.9039 3.8847 2.1325 35 1 3.0936 5.9617 0.8900 36 1 3.0936 5.9618 -0.8900 37 1 5.3502 4.9340 -0.8900 38 1 5.3503 4.9340 0.8901 39 1 7.4447 6.3777 0.0011 40 1 6.9399 9.0098 -0.8888 41 1 6.9390 9.0101 0.8912 42 1 9.2560 7.7900 -0.7128 43 1 8.7970 8.7672 2.1972 44 1 9.8676 7.4132 1.6302 45 1 11.3738 8.9665 0.4769 46 1 10.1999 11.1222 2.1698 47 1 11.7362 12.9404 4.5068 48 1 9.8679 10.1371 -1.0621 49 1 8.7973 10.6884 0.2983 50 1 2.8945 3.8880 -2.1323 51 1 2.0820 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100973764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:14 Heat of formation + Delta-G solvation = -30.104038 kcal Electronic energy + Delta-G solvation = -26149.661000 eV Core-core repulsion = 22433.616914 eV Total energy + Delta-G solvation = -3716.044086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.00836 -40.34868 -39.72582 -36.19454 -35.89766 -34.98153 -33.41188 -32.18460 -31.77864 -30.10054 -28.45931 -26.45770 -26.12796 -25.36764 -23.59499 -23.43570 -22.38635 -21.55225 -21.15029 -20.41508 -19.05255 -18.13374 -17.28546 -16.97656 -16.79811 -16.57225 -16.36255 -16.04036 -15.95442 -15.44044 -15.15931 -14.88285 -14.70445 -14.50520 -14.35605 -14.19913 -14.03049 -13.73816 -13.39842 -13.24532 -13.23228 -13.02670 -12.91808 -12.69499 -12.65779 -12.36639 -12.28305 -12.15598 -12.05836 -11.86891 -11.64535 -11.59984 -11.59216 -11.54924 -11.10593 -10.87209 -10.76541 -10.04131 -9.78533 -9.37537 -8.97721 -7.94812 -5.23167 0.43170 0.53965 1.47491 1.48102 1.58238 1.67380 2.24833 2.56755 2.86806 3.37459 3.64514 3.76181 3.76547 3.90501 3.91279 3.95719 4.07765 4.14407 4.19541 4.26121 4.32130 4.37802 4.38376 4.44956 4.53303 4.56597 4.63776 4.66481 4.68042 4.74066 4.80953 4.96313 4.98168 4.99511 5.06293 5.08259 5.10486 5.11943 5.22724 5.25480 5.27127 5.38206 5.39704 5.46766 5.54396 5.56763 5.74132 5.76562 5.77650 6.16285 6.27695 6.60885 7.30225 7.33089 8.11516 8.33136 9.29024 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.001479 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.844964 B =18930.858227 C =19489.753163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.093 4.093 7 C -0.060 4.060 8 C -0.123 4.123 9 C 0.505 3.495 10 O -0.592 6.592 11 N -0.715 5.715 12 C 0.137 3.863 13 C -0.094 4.094 14 C -0.153 4.153 15 C 0.142 3.858 16 N -0.731 5.731 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.079 4.079 20 N -0.973 5.973 21 Si 0.973 3.027 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.296 1.296 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.124 4.124 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.417 0.583 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.123 0.877 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.132 0.868 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.816 -27.501 -12.716 36.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.093 4.093 7 C -0.098 4.098 8 C -0.162 4.162 9 C 0.294 3.706 10 O -0.473 6.473 11 N -0.367 5.367 12 C 0.013 3.987 13 C -0.113 4.113 14 C -0.194 4.194 15 C 0.033 3.967 16 N -0.368 5.368 17 C -0.374 4.374 18 H 0.098 0.902 19 C -0.271 4.271 20 N -0.624 5.624 21 Si 0.802 3.198 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.223 1.223 25 C -0.177 4.177 26 C -0.138 4.138 27 C -0.142 4.142 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.254 0.746 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.141 0.859 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.150 0.850 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.150 -26.902 -12.671 35.921 hybrid contribution 0.810 0.745 1.006 1.491 sum -19.340 -26.157 -11.665 34.559 Atomic orbital electron populations 1.21737 0.94478 1.02297 1.01774 1.20578 0.96326 0.91712 1.03546 1.20178 0.98868 0.97165 0.93156 1.21237 0.99918 0.94856 0.98341 1.21236 0.99761 0.95219 0.97949 1.19872 1.00179 0.95621 0.93678 1.20220 0.93820 0.92405 1.03330 1.21638 0.96281 0.91735 1.06573 1.21332 0.82102 0.92501 0.74700 1.90697 1.56502 1.48313 1.51757 1.45960 1.07124 1.09167 1.74481 1.21187 0.93501 0.83151 1.00862 1.22463 0.92378 0.98331 0.98145 1.23738 0.99266 1.00442 0.95905 1.22010 0.94801 0.90323 0.89614 1.42645 1.17022 1.32423 1.44686 1.19791 0.93961 1.09000 1.14631 0.90191 1.25593 1.01914 0.98061 1.01539 1.69837 1.37161 1.18415 1.36962 0.85076 0.79610 0.77406 0.77707 1.18679 1.22192 1.22318 1.23330 0.98079 0.96352 0.99982 1.21242 0.99566 0.95114 0.97887 1.21257 0.99816 0.94846 0.98278 0.93130 0.92952 0.91278 0.90247 0.90476 0.85035 0.85570 0.91737 0.91154 0.86390 0.87100 0.74643 0.91860 0.93903 0.85928 0.92805 0.91227 0.90038 0.79714 0.94136 0.90286 0.91669 0.85017 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 71.98 0.71 -0.49 16 2 C -0.08 -0.74 6.06 29.85 0.18 -0.56 16 3 C -0.09 -1.20 5.13 -19.87 -0.10 -1.30 16 4 C -0.13 -1.73 9.70 22.27 0.22 -1.52 16 5 C -0.12 -1.88 9.70 22.27 0.22 -1.67 16 6 C -0.09 -1.46 5.13 -19.87 -0.10 -1.56 16 7 C -0.06 -1.02 4.63 29.85 0.14 -0.89 16 8 C -0.12 -1.77 5.68 29.85 0.17 -1.60 16 9 C 0.51 11.37 7.83 87.66 0.69 12.05 16 10 O -0.59 -19.09 15.98 -3.03 -0.05 -19.14 16 11 N -0.72 -14.02 5.56 -463.07 -2.57 -16.59 16 12 C 0.14 3.39 5.50 86.38 0.47 3.87 16 13 C -0.09 -2.24 3.75 -10.27 -0.04 -2.28 16 14 C -0.15 -4.77 7.45 31.18 0.23 -4.54 16 15 C 0.14 5.32 4.48 45.58 0.20 5.52 16 16 N -0.73 -36.84 5.41 -320.16 -1.73 -38.57 16 17 C -0.24 -13.38 9.97 84.03 0.84 -12.54 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 19 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 20 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 21 Si 0.97 46.14 29.55 68.60 2.03 48.16 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 C -0.14 -4.19 7.40 31.12 0.23 -3.96 16 26 C -0.12 -1.69 9.70 22.27 0.22 -1.47 16 27 C -0.12 -1.59 9.70 22.27 0.22 -1.38 16 28 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 32 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 33 H 0.13 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.13 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.06 1.29 8.04 -2.38 -0.02 1.28 16 36 H 0.07 1.32 8.04 -2.39 -0.02 1.30 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.42 5.45 8.47 -92.71 -0.79 4.66 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.04 1.30 7.88 -2.38 -0.02 1.29 16 42 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.05 1.96 7.92 -2.39 -0.02 1.94 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 46 H 0.37 20.43 7.92 -92.71 -0.73 19.69 16 47 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 48 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 50 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16 51 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -72.42 420.36 2.30 -70.12 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.61 Total: 34.52 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 4.95 Total: -18.42 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -4.02 Total: -115.25 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -72.42 2.30 -70.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100973764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.020 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds