Wall clock time and date at job start Tue Mar 31 2020 16:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47268 * 2 1 4 4 C 1.38260 * 119.99986 * 89.99509 * 3 2 1 5 5 C 1.38211 * 119.99757 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.00347 * 0.02562 * 5 4 3 7 7 C 1.38213 * 119.99914 * 359.95467 * 6 5 4 8 8 C 1.50700 * 119.99932 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47157 * 89.99949 * 8 7 6 10 10 O 1.21282 * 119.99913 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99832 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99398 * 179.97438 * 11 9 8 13 13 C 1.53010 * 109.46804 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.63440 * 51.85727 * 13 12 11 15 15 C 1.54328 * 110.99889 * 288.78107 * 13 12 11 16 16 N 1.47023 * 107.26445 * 219.59749 * 15 13 12 17 17 C 1.36939 * 125.64881 * 178.85021 * 16 15 13 18 18 H 1.08000 * 119.99903 * 342.87500 * 17 16 15 19 19 C 1.38813 * 119.99790 * 162.87291 * 17 16 15 20 20 N 1.31620 * 120.00492 * 331.90309 * 19 17 16 21 21 Si 1.86805 * 119.99884 * 151.90711 * 19 17 16 22 22 H 1.48496 * 109.47349 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.46948 * 300.00224 * 21 19 17 24 24 H 1.48505 * 109.47175 * 59.99533 * 21 19 17 25 25 C 1.47421 * 108.70467 * 358.59038 * 16 15 13 26 26 C 1.54917 * 104.83049 * 24.35070 * 25 16 15 27 27 H 1.09002 * 110.99802 * 81.10572 * 26 25 16 28 28 C 1.52998 * 111.00163 * 204.91591 * 26 25 16 29 29 C 1.38220 * 119.99932 * 270.21514 * 3 2 1 30 30 H 1.09007 * 109.47047 * 60.00297 * 1 2 3 31 31 H 1.09007 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47072 * 299.99919 * 1 2 3 33 33 H 1.09003 * 109.47518 * 240.00238 * 2 1 3 34 34 H 1.09000 * 109.47062 * 120.00140 * 2 1 3 35 35 H 1.07994 * 119.99726 * 0.02562 * 4 3 2 36 36 H 1.08003 * 120.00118 * 179.97438 * 5 4 3 37 37 H 1.07998 * 119.99948 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47278 * 330.00090 * 8 7 6 39 39 H 1.09004 * 109.46849 * 209.99331 * 8 7 6 40 40 H 0.96990 * 119.99968 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.47520 * 60.00140 * 12 11 9 42 42 H 1.08996 * 109.47482 * 299.99903 * 12 11 9 43 43 H 1.09003 * 109.99465 * 100.12744 * 15 13 12 44 44 H 1.08998 * 109.78421 * 338.95988 * 15 13 12 45 45 H 0.97000 * 119.99473 * 353.96690 * 20 19 17 46 46 H 1.08998 * 110.37200 * 143.19182 * 25 16 15 47 47 H 1.09003 * 110.36526 * 265.40803 * 25 16 15 48 48 H 1.09000 * 109.47258 * 58.55194 * 28 26 25 49 49 H 1.09010 * 109.46654 * 178.55023 * 28 26 25 50 50 H 1.08993 * 109.47577 * 298.54559 * 28 26 25 51 51 H 1.07995 * 120.00088 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0726 1.1974 5 6 2.7230 3.3758 1.1973 6 6 2.9525 4.0279 0.0000 7 6 2.7226 3.3762 -1.1970 8 6 2.9734 4.0868 -2.5020 9 6 4.3969 3.8509 -2.9370 10 8 5.1352 3.1730 -2.2542 11 7 4.8497 4.3942 -4.0843 12 6 6.2336 4.1654 -4.5068 13 6 6.4882 4.8867 -5.8320 14 1 6.1887 5.9326 -5.7637 15 6 5.7503 4.1874 -6.9930 16 7 6.6492 4.2072 -8.1563 17 6 6.3773 3.6657 -9.3843 18 1 5.5804 2.9448 -9.4921 19 6 7.1259 4.0435 -10.4905 20 7 7.6779 5.2375 -10.5352 21 14 7.3500 2.8572 -11.9161 22 1 8.1848 3.4958 -12.9650 23 1 8.0211 1.6238 -11.4328 24 1 6.0225 2.5085 -12.4832 25 6 7.8892 4.9120 -7.7836 26 6 7.9794 4.7684 -6.2437 27 1 8.3863 3.7963 -5.9652 28 6 8.8081 5.9013 -5.6350 29 6 2.2585 2.0739 -1.1970 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0830 1.5634 2.1326 36 1 2.9025 3.8852 2.1326 37 1 3.3117 5.0464 0.0000 38 1 2.8057 5.1559 -2.3717 39 1 2.2929 3.7021 -3.2617 40 1 4.2593 4.9367 -4.6302 41 1 6.4017 3.0964 -4.6374 42 1 6.9139 4.5499 -3.7469 43 1 4.8302 4.7232 -7.2264 44 1 5.5223 3.1575 -6.7182 45 1 7.4905 5.8848 -9.8374 46 1 8.7501 4.4426 -8.2594 47 1 7.8273 5.9632 -8.0652 48 1 8.3571 6.8599 -5.8917 49 1 8.8338 5.7906 -4.5508 50 1 9.8237 5.8606 -6.0284 51 1 2.0748 1.5661 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102101209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:35 Heat of formation + Delta-G solvation = -16.349110 kcal Electronic energy + Delta-G solvation = -27562.515790 eV Core-core repulsion = 23847.068162 eV Total energy + Delta-G solvation = -3715.447628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.22946 -39.19854 -38.14403 -34.88090 -34.56662 -33.17622 -32.60073 -30.81183 -29.88809 -29.48866 -27.64593 -25.94200 -25.03811 -24.18012 -22.90858 -22.20439 -21.10274 -20.27417 -19.97825 -19.36770 -17.49530 -17.05253 -16.71083 -16.14384 -15.96347 -15.33223 -15.10836 -14.74271 -14.31713 -14.02740 -13.89778 -13.76532 -13.63348 -13.49026 -13.32680 -13.13735 -13.08658 -12.83167 -12.32378 -12.24502 -12.05308 -11.96891 -11.94121 -11.51495 -11.42613 -11.26073 -11.07431 -10.98433 -10.74350 -10.54780 -10.33352 -10.18252 -10.12305 -9.98862 -9.78181 -9.48748 -9.00304 -8.93444 -8.76510 -8.40749 -6.94224 -6.10588 -3.14869 1.16645 1.25029 2.64163 3.16646 3.49402 3.54238 3.67288 3.71635 4.40374 4.48131 4.57535 4.63964 4.81339 4.88221 4.92574 5.01752 5.03969 5.07925 5.08122 5.11208 5.21926 5.24671 5.27666 5.34541 5.41840 5.51264 5.59702 5.61587 5.62470 5.72276 5.83398 5.89438 5.90630 5.95309 6.00699 6.01723 6.12504 6.23902 6.29244 6.35577 6.39645 6.44003 6.45421 6.48554 6.60950 6.80514 6.84803 6.99248 7.07413 7.51238 7.79461 8.23286 8.48456 9.01912 9.81102 10.37038 11.21983 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.002152 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.846749 B =13006.503481 C =14182.195948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.059 4.059 8 C -0.105 4.105 9 C 0.512 3.488 10 O -0.535 6.535 11 N -0.727 5.727 12 C 0.134 3.866 13 C -0.109 4.109 14 H 0.078 0.922 15 C 0.141 3.859 16 N -0.604 5.604 17 C -0.337 4.337 18 H 0.064 0.936 19 C -0.025 4.025 20 N -0.916 5.916 21 Si 1.063 2.937 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.293 1.293 25 C 0.151 3.849 26 C -0.102 4.102 27 H 0.075 0.925 28 C -0.137 4.137 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.401 0.599 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.026 0.974 45 H 0.268 0.732 46 H 0.050 0.950 47 H 0.027 0.973 48 H 0.053 0.947 49 H 0.049 0.951 50 H 0.056 0.944 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 -2.212 22.652 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.060 4.060 8 C -0.145 4.145 9 C 0.298 3.702 10 O -0.412 6.412 11 N -0.379 5.379 12 C 0.011 3.989 13 C -0.128 4.128 14 H 0.096 0.904 15 C 0.016 3.984 16 N -0.330 5.330 17 C -0.465 4.465 18 H 0.081 0.919 19 C -0.227 4.227 20 N -0.557 5.557 21 Si 0.893 3.107 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.220 1.220 25 C 0.026 3.974 26 C -0.122 4.122 27 H 0.094 0.906 28 C -0.195 4.195 29 C -0.120 4.120 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.235 0.765 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.043 0.957 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.544 -2.979 21.564 24.188 hybrid contribution -1.101 0.564 1.113 1.664 sum -11.645 -2.415 22.676 25.606 Atomic orbital electron populations 1.21747 0.94731 1.01676 1.02162 1.20549 0.96116 0.92724 1.02953 1.19835 0.99130 0.96111 0.93078 1.20981 1.00489 0.95002 0.97371 1.21053 0.99655 0.94981 0.97807 1.20945 0.99908 0.99987 0.92010 1.19249 0.98750 0.94381 0.93606 1.20702 0.94891 1.02526 0.96346 1.20480 0.89351 0.79589 0.80826 1.90726 1.58204 1.38475 1.53756 1.46080 1.14318 1.53571 1.23896 1.21395 0.81572 1.00655 0.95327 1.22489 0.97458 0.99505 0.93385 0.90393 1.21362 0.92995 0.96854 0.87225 1.44533 1.12518 1.67427 1.08553 1.19720 1.21304 1.20745 0.84704 0.91862 1.25741 0.98900 0.98866 0.99201 1.70789 1.47271 1.03059 1.34572 0.83553 0.76188 0.75203 0.75788 1.21065 1.22109 1.22019 1.21575 0.90379 0.95930 0.89561 1.22385 0.92979 0.98867 0.97994 0.90620 1.21688 0.99985 0.98167 0.99657 1.20855 0.99575 0.93927 0.97672 0.92515 0.92424 0.92635 0.90954 0.91082 0.86369 0.86174 0.86356 0.87951 0.87872 0.76466 0.91354 0.91638 0.96219 0.95654 0.92038 0.93167 0.95521 0.92760 0.93173 0.92532 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.09 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.08 -0.81 5.13 -104.62 -0.54 -1.35 16 4 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 5 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 6 C -0.11 -1.14 9.70 -39.58 -0.38 -1.53 16 7 C -0.06 -0.65 4.37 -104.62 -0.46 -1.10 16 8 C -0.10 -0.98 5.83 -29.03 -0.17 -1.15 16 9 C 0.51 6.64 7.82 -10.98 -0.09 6.55 16 10 O -0.54 -9.19 16.03 5.56 0.09 -9.11 16 11 N -0.73 -8.89 5.47 -60.29 -0.33 -9.22 16 12 C 0.13 1.93 5.03 -4.04 -0.02 1.90 16 13 C -0.11 -1.75 2.41 -88.78 -0.21 -1.96 16 14 H 0.08 1.17 8.01 -51.93 -0.42 0.76 16 15 C 0.14 2.86 6.77 -3.06 -0.02 2.83 16 16 N -0.60 -15.25 3.29 -170.06 -0.56 -15.81 16 17 C -0.34 -9.57 10.02 -15.06 -0.15 -9.72 16 18 H 0.06 1.80 7.97 -52.49 -0.42 1.38 16 19 C -0.03 -0.73 5.08 -17.43 -0.09 -0.82 16 20 N -0.92 -27.65 12.93 55.49 0.72 -26.93 16 21 Si 1.06 25.48 30.00 -169.99 -5.10 20.38 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.15 3.46 4.77 -2.53 -0.01 3.45 16 26 C -0.10 -1.78 3.09 -88.47 -0.27 -2.06 16 27 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 28 C -0.14 -1.98 9.30 37.16 0.35 -1.63 16 29 C -0.10 -1.11 9.36 -39.58 -0.37 -1.48 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 41 H 0.07 1.11 7.95 -51.93 -0.41 0.69 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.03 0.53 7.70 -51.93 -0.40 0.13 16 45 H 0.27 8.09 6.06 -40.82 -0.25 7.84 16 46 H 0.05 1.27 7.95 -51.93 -0.41 0.86 16 47 H 0.03 0.65 6.70 -51.93 -0.35 0.30 16 48 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 49 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 50 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 411.99 15.07 6.21 6.21 Total: -1.00 -34.32 411.99 -10.96 -45.28 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.97 Total: 1.75 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.02 Total: -12.55 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.17 Total: -51.96 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.10 Total: 20.38 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.32 -10.96 -45.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102101209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.935 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds