Wall clock time and date at job start Tue Mar 31 2020 16:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47268 * 2 1 4 4 C 1.38260 * 119.99986 * 89.99509 * 3 2 1 5 5 C 1.38211 * 119.99757 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.00347 * 0.02562 * 5 4 3 7 7 C 1.38213 * 119.99914 * 359.95467 * 6 5 4 8 8 C 1.50700 * 119.99932 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47157 * 89.99949 * 8 7 6 10 10 O 1.21282 * 119.99913 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99832 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99398 * 179.97438 * 11 9 8 13 13 C 1.53010 * 109.46804 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.63440 * 51.85727 * 13 12 11 15 15 C 1.54328 * 110.99889 * 288.78107 * 13 12 11 16 16 N 1.47023 * 107.26445 * 219.59749 * 15 13 12 17 17 C 1.36939 * 125.64881 * 178.85021 * 16 15 13 18 18 H 1.08000 * 119.99903 * 342.87500 * 17 16 15 19 19 C 1.38813 * 119.99790 * 162.87291 * 17 16 15 20 20 N 1.31620 * 120.00492 * 331.90309 * 19 17 16 21 21 Si 1.86805 * 119.99884 * 151.90711 * 19 17 16 22 22 H 1.48496 * 109.47349 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.46948 * 300.00224 * 21 19 17 24 24 H 1.48505 * 109.47175 * 59.99533 * 21 19 17 25 25 C 1.47421 * 108.70467 * 358.59038 * 16 15 13 26 26 C 1.54917 * 104.83049 * 24.35070 * 25 16 15 27 27 H 1.09002 * 110.99802 * 81.10572 * 26 25 16 28 28 C 1.52998 * 111.00163 * 204.91591 * 26 25 16 29 29 C 1.38220 * 119.99932 * 270.21514 * 3 2 1 30 30 H 1.09007 * 109.47047 * 60.00297 * 1 2 3 31 31 H 1.09007 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47072 * 299.99919 * 1 2 3 33 33 H 1.09003 * 109.47518 * 240.00238 * 2 1 3 34 34 H 1.09000 * 109.47062 * 120.00140 * 2 1 3 35 35 H 1.07994 * 119.99726 * 0.02562 * 4 3 2 36 36 H 1.08003 * 120.00118 * 179.97438 * 5 4 3 37 37 H 1.07998 * 119.99948 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47278 * 330.00090 * 8 7 6 39 39 H 1.09004 * 109.46849 * 209.99331 * 8 7 6 40 40 H 0.96990 * 119.99968 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.47520 * 60.00140 * 12 11 9 42 42 H 1.08996 * 109.47482 * 299.99903 * 12 11 9 43 43 H 1.09003 * 109.99465 * 100.12744 * 15 13 12 44 44 H 1.08998 * 109.78421 * 338.95988 * 15 13 12 45 45 H 0.97000 * 119.99473 * 353.96690 * 20 19 17 46 46 H 1.08998 * 110.37200 * 143.19182 * 25 16 15 47 47 H 1.09003 * 110.36526 * 265.40803 * 25 16 15 48 48 H 1.09000 * 109.47258 * 58.55194 * 28 26 25 49 49 H 1.09010 * 109.46654 * 178.55023 * 28 26 25 50 50 H 1.08993 * 109.47577 * 298.54559 * 28 26 25 51 51 H 1.07995 * 120.00088 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0726 1.1974 5 6 2.7230 3.3758 1.1973 6 6 2.9525 4.0279 0.0000 7 6 2.7226 3.3762 -1.1970 8 6 2.9734 4.0868 -2.5020 9 6 4.3969 3.8509 -2.9370 10 8 5.1352 3.1730 -2.2542 11 7 4.8497 4.3942 -4.0843 12 6 6.2336 4.1654 -4.5068 13 6 6.4882 4.8867 -5.8320 14 1 6.1887 5.9326 -5.7637 15 6 5.7503 4.1874 -6.9930 16 7 6.6492 4.2072 -8.1563 17 6 6.3773 3.6657 -9.3843 18 1 5.5804 2.9448 -9.4921 19 6 7.1259 4.0435 -10.4905 20 7 7.6779 5.2375 -10.5352 21 14 7.3500 2.8572 -11.9161 22 1 8.1848 3.4958 -12.9650 23 1 8.0211 1.6238 -11.4328 24 1 6.0225 2.5085 -12.4832 25 6 7.8892 4.9120 -7.7836 26 6 7.9794 4.7684 -6.2437 27 1 8.3863 3.7963 -5.9652 28 6 8.8081 5.9013 -5.6350 29 6 2.2585 2.0739 -1.1970 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0830 1.5634 2.1326 36 1 2.9025 3.8852 2.1326 37 1 3.3117 5.0464 0.0000 38 1 2.8057 5.1559 -2.3717 39 1 2.2929 3.7021 -3.2617 40 1 4.2593 4.9367 -4.6302 41 1 6.4017 3.0964 -4.6374 42 1 6.9139 4.5499 -3.7469 43 1 4.8302 4.7232 -7.2264 44 1 5.5223 3.1575 -6.7182 45 1 7.4905 5.8848 -9.8374 46 1 8.7501 4.4426 -8.2594 47 1 7.8273 5.9632 -8.0652 48 1 8.3571 6.8599 -5.8917 49 1 8.8338 5.7906 -4.5508 50 1 9.8237 5.8606 -6.0284 51 1 2.0748 1.5661 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102101209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:34 Heat of formation + Delta-G solvation = -35.699582 kcal Electronic energy + Delta-G solvation = -27563.354889 eV Core-core repulsion = 23847.068162 eV Total energy + Delta-G solvation = -3716.286727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.16883 -40.22025 -39.54656 -36.22995 -35.32121 -34.82774 -33.36910 -32.57435 -31.06774 -30.34902 -28.61949 -27.73441 -26.49218 -24.80930 -24.47480 -23.05471 -22.13570 -21.58834 -21.28102 -20.59909 -19.52515 -18.11613 -17.51651 -17.16661 -16.83406 -16.48954 -16.23242 -15.90857 -15.73553 -15.60355 -15.23009 -14.84107 -14.76028 -14.56594 -14.47928 -14.19828 -14.00253 -13.79252 -13.68844 -13.48534 -13.11873 -12.92116 -12.77858 -12.66875 -12.60642 -12.60137 -12.43679 -12.15397 -11.92632 -11.79654 -11.76331 -11.70042 -11.63594 -11.55979 -11.44717 -10.93384 -10.53606 -10.10229 -9.68128 -9.49235 -9.03134 -8.34779 -5.35809 0.42668 0.51500 1.55218 1.63311 1.64951 1.82337 2.19980 2.61811 2.90346 3.15643 3.44411 3.63297 3.66986 3.74317 3.81931 3.83108 3.98548 4.06035 4.23026 4.26097 4.29217 4.34747 4.38301 4.48267 4.50162 4.57536 4.58445 4.60906 4.69202 4.69667 4.75613 4.78319 4.85292 4.88605 5.01341 5.03333 5.07784 5.10625 5.19694 5.21593 5.22944 5.28864 5.36985 5.41064 5.48695 5.58031 5.65061 5.66737 5.73544 6.14731 6.30361 6.55320 6.89462 7.25257 7.68510 8.27692 8.97116 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.002152 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.846749 B =13006.503481 C =14182.195948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.076 4.076 8 C -0.097 4.097 9 C 0.513 3.487 10 O -0.580 6.580 11 N -0.719 5.719 12 C 0.146 3.854 13 C -0.087 4.087 14 H 0.097 0.903 15 C 0.138 3.862 16 N -0.629 5.629 17 C -0.349 4.349 18 H 0.057 0.943 19 C -0.078 4.078 20 N -0.942 5.942 21 Si 1.113 2.887 22 H -0.290 1.290 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.155 3.845 26 C -0.092 4.092 27 H 0.073 0.927 28 C -0.130 4.130 29 C -0.123 4.123 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.414 0.586 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.023 0.977 44 H 0.021 0.979 45 H 0.256 0.744 46 H 0.013 0.987 47 H 0.010 0.990 48 H 0.058 0.942 49 H 0.077 0.923 50 H 0.056 0.944 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.825 -2.070 24.357 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.144 4.144 7 C -0.076 4.076 8 C -0.137 4.137 9 C 0.300 3.700 10 O -0.460 6.460 11 N -0.371 5.371 12 C 0.022 3.978 13 C -0.106 4.106 14 H 0.115 0.885 15 C 0.013 3.987 16 N -0.356 5.356 17 C -0.477 4.477 18 H 0.075 0.925 19 C -0.274 4.274 20 N -0.585 5.585 21 Si 0.938 3.062 22 H -0.215 1.215 23 H -0.210 1.210 24 H -0.199 1.199 25 C 0.029 3.971 26 C -0.112 4.112 27 H 0.092 0.908 28 C -0.188 4.188 29 C -0.141 4.141 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.250 0.750 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.066 0.934 46 H 0.031 0.969 47 H 0.028 0.972 48 H 0.077 0.923 49 H 0.096 0.904 50 H 0.075 0.925 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.592 -2.824 23.286 26.164 hybrid contribution -0.826 0.491 0.628 1.148 sum -12.418 -2.333 23.913 27.046 Atomic orbital electron populations 1.21715 0.93776 1.02389 1.02024 1.20585 0.96916 0.91703 1.03141 1.20129 0.98940 0.97020 0.93133 1.21282 1.00200 0.95256 0.98006 1.21387 0.99068 0.95187 0.98564 1.21222 1.00133 1.00788 0.92212 1.19488 0.99023 0.94619 0.94477 1.20740 0.92433 1.04323 0.96156 1.21074 0.90391 0.78369 0.80120 1.90709 1.59694 1.40479 1.55110 1.45983 1.13655 1.53525 1.23985 1.21117 0.83160 0.99160 0.94370 1.22321 0.95562 1.00214 0.92507 0.88482 1.21506 0.92901 0.97155 0.87102 1.44836 1.14491 1.67390 1.08854 1.19977 1.21031 1.20429 0.86289 0.92522 1.27120 0.98781 0.99536 1.01952 1.70898 1.48946 1.03875 1.34773 0.82881 0.76985 0.73412 0.72961 1.21549 1.21001 1.19857 1.21503 0.88286 0.94081 0.93215 1.22295 0.94733 1.00269 0.93863 0.90845 1.21650 0.99272 0.96768 1.01087 1.21053 1.00488 0.94425 0.98160 0.93048 0.91280 0.92354 0.91431 0.90211 0.84529 0.84157 0.85118 0.85056 0.86009 0.74951 0.93320 0.90622 0.95868 0.96117 0.93364 0.96862 0.97197 0.92311 0.90362 0.92505 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 71.98 0.71 -1.02 16 2 C -0.09 -1.29 6.06 29.85 0.18 -1.11 16 3 C -0.09 -1.77 5.13 -19.86 -0.10 -1.87 16 4 C -0.13 -2.28 9.70 22.27 0.22 -2.07 16 5 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 6 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 7 C -0.08 -1.55 4.37 -19.87 -0.09 -1.64 16 8 C -0.10 -1.60 5.83 29.10 0.17 -1.43 16 9 C 0.51 12.41 7.82 87.66 0.69 13.10 16 10 O -0.58 -19.45 16.03 -3.04 -0.05 -19.50 16 11 N -0.72 -16.00 5.47 -463.04 -2.53 -18.53 16 12 C 0.15 3.92 5.03 86.38 0.43 4.36 16 13 C -0.09 -2.64 2.41 -9.60 -0.02 -2.66 16 14 H 0.10 2.64 8.01 -2.39 -0.02 2.62 16 15 C 0.14 5.52 6.77 86.73 0.59 6.11 16 16 N -0.63 -32.34 3.29 -691.96 -2.28 -34.62 16 17 C -0.35 -20.17 10.02 84.03 0.84 -19.32 16 18 H 0.06 3.27 7.97 -2.91 -0.02 3.24 16 19 C -0.08 -4.53 5.08 84.86 0.43 -4.10 16 20 N -0.94 -58.38 12.93 21.65 0.28 -58.10 16 21 Si 1.11 51.95 30.00 68.60 2.06 54.00 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 25 C 0.15 7.26 4.77 86.86 0.41 7.67 16 26 C -0.09 -3.12 3.09 -9.40 -0.03 -3.15 16 27 H 0.07 2.54 8.05 -2.39 -0.02 2.53 16 28 C -0.13 -3.47 9.30 71.98 0.67 -2.80 16 29 C -0.12 -2.61 9.36 22.27 0.21 -2.40 16 30 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 1.05 8.09 -2.39 -0.02 1.04 16 34 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 38 H 0.13 1.39 8.09 -2.39 -0.02 1.37 16 39 H 0.12 1.55 8.08 -2.38 -0.02 1.53 16 40 H 0.41 7.17 8.47 -92.72 -0.79 6.39 16 41 H 0.05 1.53 7.95 -2.39 -0.02 1.51 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.02 0.85 7.70 -2.39 -0.02 0.83 16 45 H 0.26 16.00 6.06 -92.71 -0.56 15.44 16 46 H 0.01 0.69 7.95 -2.39 -0.02 0.67 16 47 H 0.01 0.51 6.70 -2.39 -0.02 0.50 16 48 H 0.06 1.53 8.11 -2.39 -0.02 1.51 16 49 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 50 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -76.65 411.99 3.54 -73.11 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.31 Total: 20.14 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 5.75 Total: -16.50 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -4.53 Total: -111.25 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.05 Total: -19.50 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.06 Total: 54.00 kcal Total: -76.65 3.54 -73.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102101209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.408 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds