Wall clock time and date at job start Tue Mar 31 2020 16:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.46909 * 2 1 4 4 C 1.38238 * 119.99867 * 90.00345 * 3 2 1 5 5 C 1.38237 * 120.00378 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99495 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99782 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47480 * 89.99719 * 7 6 5 9 9 O 1.21285 * 119.99999 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00530 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99990 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46612 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.88756 * 51.12769 * 12 11 10 14 14 C 1.54905 * 111.00941 * 287.19674 * 12 11 10 15 15 N 1.47416 * 104.83424 * 204.91928 * 14 12 11 16 16 C 1.36940 * 125.64849 * 204.08462 * 15 14 12 17 17 H 1.08006 * 120.00167 * 354.83520 * 16 15 14 18 18 C 1.38810 * 120.00032 * 174.84193 * 16 15 14 19 19 N 1.31619 * 120.00035 * 7.05227 * 18 16 15 20 20 Si 1.86806 * 119.99907 * 187.04995 * 18 16 15 21 21 H 1.48494 * 109.46902 * 94.98573 * 20 18 16 22 22 H 1.48499 * 109.47179 * 214.98327 * 20 18 16 23 23 H 1.48494 * 109.47279 * 334.98433 * 20 18 16 24 24 C 1.47026 * 108.70699 * 24.12690 * 15 14 12 25 25 C 1.54326 * 107.26816 * 358.94321 * 24 15 14 26 26 H 1.09000 * 110.72065 * 96.16702 * 25 24 15 27 27 C 1.52995 * 110.87127 * 219.37198 * 25 24 15 28 28 C 1.38236 * 120.00330 * 0.27726 * 6 5 4 29 29 C 1.38232 * 120.00616 * 269.97811 * 3 2 1 30 30 H 1.08997 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46976 * 299.99464 * 1 2 3 32 32 H 1.08995 * 109.47113 * 59.99986 * 1 2 3 33 33 H 1.08998 * 109.47469 * 240.00552 * 2 1 3 34 34 H 1.08998 * 109.47614 * 120.00013 * 2 1 3 35 35 H 1.07998 * 119.99838 * 359.97391 * 4 3 2 36 36 H 1.07995 * 120.00524 * 180.02562 * 5 4 3 37 37 H 1.09000 * 109.47693 * 330.00196 * 7 6 5 38 38 H 1.09003 * 109.47380 * 209.99747 * 7 6 5 39 39 H 0.96993 * 119.99560 * 0.28153 * 10 8 7 40 40 H 1.08998 * 109.47085 * 299.99877 * 11 10 8 41 41 H 1.08998 * 109.47210 * 60.00432 * 11 10 8 42 42 H 1.09007 * 110.36359 * 323.76004 * 14 12 11 43 43 H 1.08996 * 110.36538 * 86.07848 * 14 12 11 44 44 H 0.97001 * 119.99786 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.88387 * 239.52478 * 24 15 14 46 46 H 1.09004 * 109.88013 * 118.35237 * 24 15 14 47 47 H 1.09005 * 109.46803 * 173.60728 * 27 25 24 48 48 H 1.08997 * 109.47300 * 293.60743 * 27 25 24 49 49 H 1.09001 * 109.47195 * 53.61077 * 27 25 24 50 50 H 1.07995 * 120.00050 * 179.72959 * 28 6 5 51 51 H 1.08007 * 119.99477 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7239 3.3756 1.1973 6 6 2.9553 4.0269 0.0001 7 6 3.4586 5.4473 0.0002 8 6 4.9657 5.4463 0.0008 9 8 5.5714 4.3956 0.0007 10 7 5.6404 6.6130 0.0005 11 6 7.1054 6.6119 0.0005 12 6 7.6164 8.0541 0.0007 13 1 7.1438 8.6337 0.7936 14 6 7.3990 8.7205 -1.3807 15 7 8.4187 9.7827 -1.4520 16 6 8.3450 10.9090 -2.2274 17 1 7.5252 11.0358 -2.9191 18 6 9.3240 11.8876 -2.1246 19 7 10.3934 11.6739 -1.3877 20 14 9.1238 13.5080 -3.0322 21 1 8.5222 14.5146 -2.1212 22 1 10.4529 13.9866 -3.4900 23 1 8.2370 13.3111 -4.2070 24 6 9.5284 9.4321 -0.5534 25 6 9.1623 8.0962 0.1270 26 1 9.6155 7.2574 -0.4013 27 6 9.5855 8.0996 1.5973 28 6 2.7199 3.3771 -1.1971 29 6 2.2631 2.0724 -1.1971 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5634 2.1325 36 1 2.9044 3.8845 2.1326 37 1 3.0954 5.9616 0.8900 38 1 3.0961 5.9614 -0.8900 39 1 5.1561 7.4533 0.0039 40 1 7.4683 6.0981 0.8907 41 1 7.4684 6.0976 -0.8893 42 1 7.5504 7.9949 -2.1799 43 1 6.3990 9.1499 -1.4414 44 1 11.0774 12.3579 -1.3157 45 1 9.6550 10.2095 0.2000 46 1 10.4477 9.3160 -1.1275 47 1 9.2170 7.1961 2.0834 48 1 10.6731 8.1294 1.6624 49 1 9.1676 8.9754 2.0937 50 1 2.8965 3.8875 -2.1323 51 1 2.0831 1.5633 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102414390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:38 Heat of formation + Delta-G solvation = -12.360753 kcal Electronic energy + Delta-G solvation = -27352.584417 eV Core-core repulsion = 23637.309737 eV Total energy + Delta-G solvation = -3715.274679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.17483 -39.14242 -37.95266 -34.94908 -34.52914 -32.95059 -31.59280 -31.06494 -30.74105 -29.38948 -27.38544 -25.92540 -25.01059 -23.58186 -22.89665 -22.64077 -21.03417 -20.37909 -19.98502 -19.17589 -17.17425 -16.67817 -16.53165 -16.09053 -15.83781 -15.28757 -15.05388 -14.75398 -14.27455 -14.03639 -13.97729 -13.80738 -13.56745 -13.52418 -13.24143 -13.06124 -12.93052 -12.54517 -12.26451 -12.22838 -11.91555 -11.78527 -11.65869 -11.45239 -11.36875 -11.23107 -11.06352 -11.01408 -10.81680 -10.79310 -10.18796 -10.01742 -9.98730 -9.92097 -9.67438 -9.55778 -9.03035 -8.92402 -8.65755 -8.58877 -6.83544 -5.73464 -3.05781 1.15994 1.29749 2.69149 3.21917 3.38730 3.43976 3.46142 3.70388 4.42943 4.48218 4.56169 4.61004 4.80041 4.85572 4.91221 5.04611 5.10931 5.13864 5.21638 5.23461 5.26854 5.34334 5.35852 5.44257 5.52392 5.55952 5.57291 5.65341 5.76517 5.81240 5.87329 5.93088 5.93773 6.02960 6.11864 6.18639 6.26299 6.28912 6.45054 6.46160 6.47326 6.48991 6.57159 6.62401 6.76497 6.86817 6.94353 7.55648 7.57876 7.64502 7.82848 8.25073 8.28904 9.20815 9.81504 10.48207 11.38490 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024842 B = 0.001913 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.837438 B =14631.555774 C =15366.619803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.105 4.105 8 C 0.511 3.489 9 O -0.537 6.537 10 N -0.726 5.726 11 C 0.133 3.867 12 C -0.112 4.112 13 H 0.080 0.920 14 C 0.142 3.858 15 N -0.606 5.606 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.183 3.817 25 C -0.111 4.111 26 H 0.067 0.933 27 C -0.134 4.134 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.401 0.599 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.018 0.982 43 H 0.036 0.964 44 H 0.252 0.748 45 H 0.050 0.950 46 H 0.039 0.961 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.896 -18.534 6.102 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.067 4.067 7 C -0.144 4.144 8 C 0.297 3.703 9 O -0.413 6.413 10 N -0.378 5.378 11 C 0.010 3.990 12 C -0.132 4.132 13 H 0.098 0.902 14 C 0.016 3.984 15 N -0.332 5.332 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.058 3.942 25 C -0.131 4.131 26 H 0.085 0.915 27 C -0.192 4.192 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.236 0.764 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.301 -19.090 6.045 26.463 hybrid contribution -0.130 1.421 -0.504 1.513 sum -17.431 -17.669 5.541 25.431 Atomic orbital electron populations 1.21743 0.94793 1.01588 1.02201 1.20537 0.96084 0.92821 1.02811 1.19865 0.99337 0.96102 0.93271 1.20938 1.00420 0.94774 0.97433 1.20948 0.98851 0.94900 0.97348 1.19262 0.99069 0.94764 0.93580 1.20697 0.92824 0.95599 1.05328 1.20486 0.89546 0.83873 0.76411 1.90723 1.70321 1.31238 1.49053 1.46099 1.08013 1.08443 1.75218 1.21380 0.78483 0.97289 1.01897 1.22671 0.97174 0.93538 0.99815 0.90177 1.21581 0.93144 0.90878 0.92817 1.44468 1.17703 1.21007 1.50071 1.19054 1.07774 0.93689 1.15300 0.90486 1.24822 0.96823 0.98575 1.00139 1.69979 1.09380 1.33513 1.43751 0.86130 0.76927 0.84010 0.78908 1.21643 1.21770 1.20665 1.21227 0.90608 0.89888 0.92446 1.22437 0.93321 1.01005 0.96309 0.91480 1.21688 1.01079 1.00707 0.95679 1.20974 0.98696 0.94886 0.97429 1.20950 1.00339 0.94749 0.97463 0.92502 0.92583 0.92566 0.91101 0.91123 0.86298 0.86289 0.88008 0.87885 0.76439 0.91783 0.91502 0.96439 0.94581 0.93758 0.93160 0.94260 0.93679 0.92776 0.92720 0.86189 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.09 -0.61 6.06 -27.88 -0.17 -0.77 16 3 C -0.09 -0.81 5.13 -104.62 -0.54 -1.35 16 4 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 5 C -0.10 -1.06 9.70 -39.58 -0.38 -1.45 16 6 C -0.07 -0.72 4.37 -104.62 -0.46 -1.17 16 7 C -0.10 -0.97 5.83 -29.04 -0.17 -1.14 16 8 C 0.51 6.61 7.82 -10.98 -0.09 6.53 16 9 O -0.54 -9.21 16.03 5.55 0.09 -9.12 16 10 N -0.73 -8.88 5.50 -60.29 -0.33 -9.21 16 11 C 0.13 1.92 5.13 -4.04 -0.02 1.90 16 12 C -0.11 -1.83 2.49 -88.47 -0.22 -2.05 16 13 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 14 C 0.14 2.81 6.65 -2.54 -0.02 2.80 16 15 N -0.61 -15.22 3.39 -170.07 -0.58 -15.80 16 16 C -0.23 -6.35 10.27 -15.06 -0.15 -6.50 16 17 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 18 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 19 N -0.92 -26.83 10.36 55.49 0.57 -26.26 16 20 Si 0.91 21.93 29.56 -169.99 -5.02 16.91 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.18 4.36 4.98 -3.06 -0.02 4.34 16 25 C -0.11 -2.01 3.01 -88.78 -0.27 -2.27 16 26 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 27 C -0.13 -2.08 9.17 37.16 0.34 -1.74 16 28 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 29 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.40 4.04 8.47 -40.82 -0.35 3.70 16 40 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 42 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 45 H 0.05 1.32 6.93 -51.93 -0.36 0.96 16 46 H 0.04 1.05 7.61 -51.93 -0.40 0.66 16 47 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 50 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 51 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -33.19 411.92 -11.15 -44.34 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -9.05 Total: 1.16 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -3.04 Total: -8.23 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.33 Total: -51.27 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.19 -11.15 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102414390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.978 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds