Wall clock time and date at job start Tue Mar 31 2020 16:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.46909 * 2 1 4 4 C 1.38238 * 119.99867 * 90.00345 * 3 2 1 5 5 C 1.38237 * 120.00378 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99495 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99782 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47480 * 89.99719 * 7 6 5 9 9 O 1.21285 * 119.99999 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00530 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99990 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46612 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.88756 * 51.12769 * 12 11 10 14 14 C 1.54905 * 111.00941 * 287.19674 * 12 11 10 15 15 N 1.47416 * 104.83424 * 204.91928 * 14 12 11 16 16 C 1.36940 * 125.64849 * 204.08462 * 15 14 12 17 17 H 1.08006 * 120.00167 * 354.83520 * 16 15 14 18 18 C 1.38810 * 120.00032 * 174.84193 * 16 15 14 19 19 N 1.31619 * 120.00035 * 7.05227 * 18 16 15 20 20 Si 1.86806 * 119.99907 * 187.04995 * 18 16 15 21 21 H 1.48494 * 109.46902 * 94.98573 * 20 18 16 22 22 H 1.48499 * 109.47179 * 214.98327 * 20 18 16 23 23 H 1.48494 * 109.47279 * 334.98433 * 20 18 16 24 24 C 1.47026 * 108.70699 * 24.12690 * 15 14 12 25 25 C 1.54326 * 107.26816 * 358.94321 * 24 15 14 26 26 H 1.09000 * 110.72065 * 96.16702 * 25 24 15 27 27 C 1.52995 * 110.87127 * 219.37198 * 25 24 15 28 28 C 1.38236 * 120.00330 * 0.27726 * 6 5 4 29 29 C 1.38232 * 120.00616 * 269.97811 * 3 2 1 30 30 H 1.08997 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46976 * 299.99464 * 1 2 3 32 32 H 1.08995 * 109.47113 * 59.99986 * 1 2 3 33 33 H 1.08998 * 109.47469 * 240.00552 * 2 1 3 34 34 H 1.08998 * 109.47614 * 120.00013 * 2 1 3 35 35 H 1.07998 * 119.99838 * 359.97391 * 4 3 2 36 36 H 1.07995 * 120.00524 * 180.02562 * 5 4 3 37 37 H 1.09000 * 109.47693 * 330.00196 * 7 6 5 38 38 H 1.09003 * 109.47380 * 209.99747 * 7 6 5 39 39 H 0.96993 * 119.99560 * 0.28153 * 10 8 7 40 40 H 1.08998 * 109.47085 * 299.99877 * 11 10 8 41 41 H 1.08998 * 109.47210 * 60.00432 * 11 10 8 42 42 H 1.09007 * 110.36359 * 323.76004 * 14 12 11 43 43 H 1.08996 * 110.36538 * 86.07848 * 14 12 11 44 44 H 0.97001 * 119.99786 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.88387 * 239.52478 * 24 15 14 46 46 H 1.09004 * 109.88013 * 118.35237 * 24 15 14 47 47 H 1.09005 * 109.46803 * 173.60728 * 27 25 24 48 48 H 1.08997 * 109.47300 * 293.60743 * 27 25 24 49 49 H 1.09001 * 109.47195 * 53.61077 * 27 25 24 50 50 H 1.07995 * 120.00050 * 179.72959 * 28 6 5 51 51 H 1.08007 * 119.99477 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7239 3.3756 1.1973 6 6 2.9553 4.0269 0.0001 7 6 3.4586 5.4473 0.0002 8 6 4.9657 5.4463 0.0008 9 8 5.5714 4.3956 0.0007 10 7 5.6404 6.6130 0.0005 11 6 7.1054 6.6119 0.0005 12 6 7.6164 8.0541 0.0007 13 1 7.1438 8.6337 0.7936 14 6 7.3990 8.7205 -1.3807 15 7 8.4187 9.7827 -1.4520 16 6 8.3450 10.9090 -2.2274 17 1 7.5252 11.0358 -2.9191 18 6 9.3240 11.8876 -2.1246 19 7 10.3934 11.6739 -1.3877 20 14 9.1238 13.5080 -3.0322 21 1 8.5222 14.5146 -2.1212 22 1 10.4529 13.9866 -3.4900 23 1 8.2370 13.3111 -4.2070 24 6 9.5284 9.4321 -0.5534 25 6 9.1623 8.0962 0.1270 26 1 9.6155 7.2574 -0.4013 27 6 9.5855 8.0996 1.5973 28 6 2.7199 3.3771 -1.1971 29 6 2.2631 2.0724 -1.1971 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5634 2.1325 36 1 2.9044 3.8845 2.1326 37 1 3.0954 5.9616 0.8900 38 1 3.0961 5.9614 -0.8900 39 1 5.1561 7.4533 0.0039 40 1 7.4683 6.0981 0.8907 41 1 7.4684 6.0976 -0.8893 42 1 7.5504 7.9949 -2.1799 43 1 6.3990 9.1499 -1.4414 44 1 11.0774 12.3579 -1.3157 45 1 9.6550 10.2095 0.2000 46 1 10.4477 9.3160 -1.1275 47 1 9.2170 7.1961 2.0834 48 1 10.6731 8.1294 1.6624 49 1 9.1676 8.9754 2.0937 50 1 2.8965 3.8875 -2.1323 51 1 2.0831 1.5633 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102414390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:37 Heat of formation + Delta-G solvation = -30.703849 kcal Electronic energy + Delta-G solvation = -27353.379833 eV Core-core repulsion = 23637.309737 eV Total energy + Delta-G solvation = -3716.070096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.09292 -40.11038 -39.40577 -36.05326 -35.45598 -34.64790 -32.55087 -32.34023 -31.77521 -30.72093 -28.33570 -27.67301 -26.43824 -24.63809 -23.86066 -23.61230 -21.99292 -21.57637 -21.30621 -20.58993 -18.86469 -17.98717 -17.47676 -16.99022 -16.80563 -16.51579 -16.16929 -15.90083 -15.67208 -15.59039 -14.81795 -14.69421 -14.59740 -14.49521 -14.37861 -14.19257 -14.11841 -13.71230 -13.43850 -13.34398 -13.07830 -12.93342 -12.90020 -12.80157 -12.66304 -12.51800 -12.40147 -12.03838 -11.92536 -11.84785 -11.68482 -11.63189 -11.55938 -11.40827 -11.36129 -10.84742 -10.68073 -10.02660 -9.76226 -9.38228 -8.88322 -7.85340 -5.19697 0.42909 0.56238 1.46190 1.47644 1.56583 1.71162 2.26514 2.49728 2.93256 3.32448 3.62848 3.72842 3.76548 3.91703 3.94742 3.96081 3.97359 4.14546 4.18167 4.23079 4.39304 4.49419 4.51532 4.52751 4.60782 4.61740 4.65257 4.74647 4.76095 4.80155 4.83557 4.87178 4.97993 5.07284 5.08884 5.09940 5.16342 5.21070 5.25917 5.34763 5.39689 5.40913 5.49135 5.52668 5.55310 5.71217 5.71630 5.76704 5.82244 6.17059 6.20877 6.62748 7.10925 7.32035 7.78942 8.44041 9.25416 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024842 B = 0.001913 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.837438 B =14631.555774 C =15366.619803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.116 4.116 6 C -0.084 4.084 7 C -0.096 4.096 8 C 0.512 3.488 9 O -0.582 6.582 10 N -0.718 5.718 11 C 0.146 3.854 12 C -0.089 4.089 13 H 0.091 0.909 14 C 0.138 3.862 15 N -0.629 5.629 16 C -0.243 4.243 17 H 0.083 0.917 18 C -0.066 4.066 19 N -0.949 5.949 20 Si 0.977 3.023 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.268 1.268 24 C 0.192 3.808 25 C -0.103 4.103 26 H 0.071 0.929 27 C -0.127 4.127 28 C -0.119 4.119 29 C -0.130 4.130 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.415 0.585 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.015 0.985 43 H 0.051 0.949 44 H 0.246 0.754 45 H 0.019 0.981 46 H -0.004 1.004 47 H 0.074 0.926 48 H 0.053 0.947 49 H 0.049 0.951 50 H 0.126 0.874 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.136 -19.273 6.721 28.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.134 4.134 6 C -0.084 4.084 7 C -0.136 4.136 8 C 0.300 3.700 9 O -0.462 6.462 10 N -0.370 5.370 11 C 0.021 3.979 12 C -0.108 4.108 13 H 0.109 0.891 14 C 0.013 3.987 15 N -0.355 5.355 16 C -0.372 4.372 17 H 0.101 0.899 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.805 3.195 21 H -0.213 1.213 22 H -0.224 1.224 23 H -0.192 1.192 24 C 0.066 3.934 25 C -0.123 4.123 26 H 0.089 0.911 27 C -0.184 4.184 28 C -0.137 4.137 29 C -0.148 4.148 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.251 0.749 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.037 0.963 46 H 0.014 0.986 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.144 0.856 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.592 -19.828 6.660 28.660 hybrid contribution 0.554 1.591 -0.742 1.840 sum -19.038 -18.237 5.919 27.020 Atomic orbital electron populations 1.21716 0.93941 1.02374 1.01948 1.20581 0.96758 0.91514 1.03341 1.20182 0.98832 0.97166 0.93112 1.21230 1.00258 0.94881 0.98300 1.21218 0.98947 0.95388 0.97834 1.19497 0.99535 0.95665 0.93747 1.20730 0.89748 0.95424 1.07677 1.21086 0.90946 0.83005 0.74969 1.90708 1.71507 1.32817 1.51163 1.45987 1.07065 1.09185 1.74791 1.21085 0.79935 0.95263 1.01571 1.22460 0.95799 0.94682 0.97879 0.89060 1.21762 0.92538 0.89714 0.94714 1.44801 1.19354 1.21550 1.49800 1.19468 1.07604 0.94616 1.15476 0.89899 1.25668 0.96735 1.01930 1.01610 1.70205 1.10062 1.34117 1.45455 0.85081 0.76551 0.79757 0.78089 1.21263 1.22414 1.19230 1.20982 0.89123 0.92035 0.91211 1.22320 0.94819 0.97571 0.97569 0.91063 1.21631 1.01201 1.01943 0.93654 1.21213 0.99147 0.95460 0.97887 1.21214 1.00393 0.94842 0.98356 0.91198 0.92745 0.92904 0.90681 0.90493 0.84740 0.85159 0.85260 0.85757 0.74891 0.91140 0.92922 0.96770 0.93031 0.94468 0.96302 0.98618 0.90680 0.92828 0.93168 0.85626 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 71.98 0.71 -0.78 16 2 C -0.08 -1.08 6.06 29.85 0.18 -0.90 16 3 C -0.09 -1.65 5.13 -19.87 -0.10 -1.76 16 4 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 5 C -0.12 -2.24 9.70 22.27 0.22 -2.03 16 6 C -0.08 -1.69 4.37 -19.87 -0.09 -1.78 16 7 C -0.10 -1.54 5.83 29.10 0.17 -1.37 16 8 C 0.51 12.17 7.82 87.66 0.69 12.86 16 9 O -0.58 -19.32 16.03 -3.04 -0.05 -19.37 16 10 N -0.72 -15.68 5.50 -463.05 -2.55 -18.23 16 11 C 0.15 3.89 5.13 86.38 0.44 4.34 16 12 C -0.09 -2.74 2.49 -9.40 -0.02 -2.76 16 13 H 0.09 2.68 8.05 -2.39 -0.02 2.66 16 14 C 0.14 5.31 6.65 86.86 0.58 5.89 16 15 N -0.63 -31.92 3.39 -691.99 -2.35 -34.27 16 16 C -0.24 -13.51 10.27 84.03 0.86 -12.65 16 17 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 18 C -0.07 -3.78 5.48 84.86 0.46 -3.31 16 19 N -0.95 -57.35 10.36 21.65 0.22 -57.13 16 20 Si 0.98 45.59 29.56 68.60 2.03 47.62 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 C 0.19 9.41 4.98 86.73 0.43 9.84 16 25 C -0.10 -3.66 3.01 -9.60 -0.03 -3.69 16 26 H 0.07 2.48 8.04 -2.39 -0.02 2.47 16 27 C -0.13 -3.75 9.17 71.98 0.66 -3.09 16 28 C -0.12 -2.42 9.70 22.27 0.22 -2.21 16 29 C -0.13 -2.46 9.70 22.27 0.22 -2.25 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.88 8.09 -2.39 -0.02 0.87 16 34 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.13 1.35 8.09 -2.39 -0.02 1.33 16 38 H 0.12 1.46 8.08 -2.39 -0.02 1.44 16 39 H 0.41 6.98 8.47 -92.71 -0.79 6.20 16 40 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 41 H 0.05 1.59 7.96 -2.39 -0.02 1.57 16 42 H 0.01 0.57 7.91 -2.38 -0.02 0.55 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.02 1.03 6.93 -2.39 -0.02 1.01 16 46 H 0.00 -0.25 7.61 -2.38 -0.02 -0.27 16 47 H 0.07 1.80 8.08 -2.38 -0.02 1.78 16 48 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.05 1.53 8.07 -2.39 -0.02 1.51 16 50 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 51 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -74.10 411.92 3.22 -70.88 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.10 Total: 18.26 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.81 Total: -7.77 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -4.67 Total: -109.62 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -74.10 3.22 -70.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102414390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.174 kcal (2) G-P(sol) polarization free energy of solvation -74.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds