Wall clock time and date at job start Tue Mar 31 2020 16:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47122 * 2 1 4 4 C 1.38248 * 120.00721 * 265.02296 * 3 2 1 5 5 C 1.38216 * 120.00363 * 180.02562 * 4 3 2 6 6 C 1.38252 * 119.99687 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00370 * 359.73721 * 6 5 4 8 8 C 1.38219 * 119.99305 * 85.00695 * 3 2 1 9 9 C 1.50697 * 120.00367 * 359.97438 * 8 3 2 10 10 C 1.50702 * 109.46725 * 85.00108 * 9 8 3 11 11 O 1.21278 * 120.00232 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99513 * 180.02562 * 10 9 8 13 13 C 1.48145 * 127.83336 * 179.97438 * 12 10 9 14 14 C 1.54395 * 104.61454 * 219.58574 * 13 12 10 15 15 H 1.09002 * 110.34481 * 95.00280 * 14 13 12 16 16 C 1.52998 * 110.43060 * 217.21687 * 14 13 12 17 17 N 1.46495 * 109.47115 * 292.06339 * 16 14 13 18 18 C 1.36937 * 120.00092 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00158 * 359.97438 * 18 17 16 20 20 C 1.38820 * 120.00235 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00033 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 119.99770 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47225 * 90.00052 * 22 20 18 24 24 H 1.48502 * 109.46976 * 209.99954 * 22 20 18 25 25 H 1.48503 * 109.47207 * 330.00015 * 22 20 18 26 26 C 1.54281 * 104.95731 * 336.13228 * 14 13 12 27 27 H 1.09003 * 110.34267 * 241.12661 * 26 14 13 28 28 C 1.53002 * 110.34138 * 118.97957 * 26 14 13 29 29 C 1.48140 * 127.83889 * 359.97438 * 12 10 9 30 30 H 1.08992 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47008 * 299.99590 * 1 2 3 32 32 H 1.09000 * 109.47061 * 59.98960 * 1 2 3 33 33 H 1.09000 * 109.46502 * 240.00473 * 2 1 3 34 34 H 1.08991 * 109.47299 * 120.00930 * 2 1 3 35 35 H 1.08005 * 119.99855 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.99801 * 179.97438 * 5 4 3 37 37 H 1.08005 * 119.99955 * 179.97438 * 6 5 4 38 38 H 1.07998 * 120.00429 * 180.27508 * 7 6 5 39 39 H 1.08997 * 109.47424 * 325.00542 * 9 8 3 40 40 H 1.08995 * 109.47401 * 205.00515 * 9 8 3 41 41 H 1.08990 * 110.41068 * 100.80264 * 13 12 10 42 42 H 1.09000 * 110.40585 * 338.36403 * 13 12 10 43 43 H 1.09003 * 109.47249 * 52.06179 * 16 14 13 44 44 H 1.09002 * 109.47127 * 172.06017 * 16 14 13 45 45 H 0.96998 * 120.00197 * 359.97438 * 17 16 14 46 46 H 0.97003 * 120.00016 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.47535 * 60.00013 * 28 26 14 48 48 H 1.09004 * 109.47280 * 179.97438 * 28 26 14 49 49 H 1.08996 * 109.47106 * 299.99843 * 28 26 14 50 50 H 1.08998 * 110.41105 * 21.63503 * 29 12 10 51 51 H 1.09004 * 110.40870 * 259.19384 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0380 -1.1927 5 6 2.8220 3.3409 -1.1925 6 6 2.9544 4.0272 0.0003 7 6 2.6205 3.4122 1.1922 8 6 2.1645 2.1070 1.1926 9 6 1.8056 1.4345 2.4926 10 6 2.9846 0.6370 2.9877 11 8 4.0149 0.6171 2.3481 12 7 2.8940 -0.0541 4.1413 13 6 3.9350 -0.8890 4.7846 14 6 3.1692 -2.1123 5.3332 15 1 3.2088 -2.9354 4.6197 16 6 3.7524 -2.5478 6.6790 17 7 5.1005 -3.0841 6.4765 18 6 5.8240 -3.5398 7.5461 19 1 5.4009 -3.5035 8.5391 20 6 7.1017 -4.0475 7.3543 21 7 7.7972 -4.4850 8.3824 22 14 7.8338 -4.1097 5.6369 23 1 8.5640 -2.8458 5.3640 24 1 8.7740 -5.2551 5.5408 25 1 6.7455 -4.2777 4.6406 26 6 1.7160 -1.6256 5.5106 27 1 1.4182 -1.6951 6.5569 28 6 0.7691 -2.4471 4.6334 29 6 1.7308 -0.1510 5.0536 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 2.2577 1.5018 -2.1245 36 1 3.0789 3.8229 -2.1242 37 1 3.3152 5.0452 0.0005 38 1 2.7197 3.9498 2.1236 39 1 0.9570 0.7688 2.3353 40 1 1.5420 2.1906 3.2321 41 1 4.4114 -0.3425 5.5984 42 1 4.6773 -1.2032 4.0508 43 1 3.7997 -1.6895 7.3493 44 1 3.1174 -3.3172 7.1182 45 1 5.4804 -3.1171 5.5846 46 1 8.6899 -4.8401 8.2483 47 1 0.8295 -3.4975 4.9182 48 1 -0.2524 -2.0922 4.7699 49 1 1.0556 -2.3372 3.5876 50 1 0.8102 0.0916 4.5229 51 1 1.8630 0.5108 5.9096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106305684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:43 Heat of formation + Delta-G solvation = -9.252438 kcal Electronic energy + Delta-G solvation = -28666.714667 eV Core-core repulsion = 24951.574774 eV Total energy + Delta-G solvation = -3715.139893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55521 -39.50977 -37.83885 -34.82847 -34.53440 -32.96316 -32.56046 -31.54112 -29.85649 -29.55821 -27.93315 -26.56644 -25.41735 -24.05884 -23.09460 -22.17209 -21.19866 -20.79327 -19.91377 -19.23488 -17.63613 -17.06836 -16.63161 -16.43520 -15.72189 -15.47241 -15.10981 -14.62859 -14.39927 -14.22756 -14.04067 -13.76802 -13.60849 -13.47167 -13.36570 -13.21276 -13.09128 -12.79021 -12.52835 -12.31412 -12.26273 -12.02288 -11.98248 -11.86064 -11.57641 -11.51972 -11.40283 -11.02988 -10.92716 -10.90220 -10.64986 -10.57523 -10.34604 -10.09434 -9.86899 -9.58425 -8.95807 -8.90324 -8.74950 -8.68978 -7.24074 -5.76848 -3.12659 1.15710 1.24503 2.61551 2.92693 3.40069 3.43880 3.48154 3.61256 4.37439 4.45064 4.49454 4.52495 4.60480 4.68250 4.71905 4.80521 4.83337 4.93089 5.00281 5.10169 5.15108 5.20055 5.27532 5.34359 5.35364 5.38944 5.42248 5.43969 5.53426 5.61342 5.64933 5.67642 5.67759 5.74544 5.81501 5.90789 5.92313 5.98523 6.00676 6.06743 6.09904 6.19358 6.30253 6.34004 6.40710 6.47950 6.60300 6.71561 6.84348 7.55912 7.98486 8.16226 8.42074 9.20869 9.93519 10.12606 11.41448 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.002871 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.719526 B = 9750.930512 C =10556.827441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.063 4.063 9 C -0.101 4.101 10 C 0.533 3.467 11 O -0.531 6.531 12 N -0.624 5.624 13 C 0.112 3.888 14 C -0.108 4.108 15 H 0.081 0.919 16 C 0.168 3.832 17 N -0.757 5.757 18 C -0.245 4.245 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.101 4.101 27 H 0.091 0.909 28 C -0.142 4.142 29 C 0.103 3.897 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.030 0.970 44 H 0.031 0.969 45 H 0.361 0.639 46 H 0.260 0.740 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.052 0.948 50 H 0.077 0.923 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.579 14.984 -16.520 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.063 4.063 9 C -0.141 4.141 10 C 0.321 3.679 11 O -0.407 6.407 12 N -0.359 5.359 13 C -0.010 4.010 14 C -0.128 4.128 15 H 0.099 0.901 16 C 0.040 3.960 17 N -0.402 5.402 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.712 3.288 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.120 4.120 27 H 0.110 0.890 28 C -0.199 4.199 29 C -0.020 4.020 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.194 0.806 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.945 14.976 -16.733 30.035 hybrid contribution 0.775 -0.114 -1.052 1.311 sum -19.169 14.862 -17.785 30.078 Atomic orbital electron populations 1.21766 0.94641 1.01858 1.02075 1.20572 0.95965 0.92876 1.03252 1.19666 0.98315 0.95686 0.92625 1.20976 1.00166 0.95204 0.97331 1.21101 0.99711 0.94822 0.98024 1.21059 1.00686 1.00004 0.92545 1.20973 0.98631 0.94448 0.98203 1.19120 1.00122 0.93994 0.93065 1.20708 0.97585 0.99905 0.95853 1.20065 0.89389 0.79228 0.79177 1.90752 1.31289 1.62937 1.55713 1.49074 1.16198 1.48853 1.21735 1.22454 0.90767 0.90634 0.97155 1.22447 0.93566 0.97292 0.99449 0.90062 1.20699 0.86621 0.96345 0.92302 1.42734 1.14230 1.76487 1.06789 1.19037 0.96273 1.33487 0.88696 0.89186 1.24664 0.96842 1.00845 0.96665 1.69700 1.12096 1.47637 1.28737 0.86585 0.79100 0.77599 0.85484 1.20940 1.21673 1.20337 1.22103 0.95387 0.93670 1.00863 0.89026 1.21836 0.98254 1.00304 0.99488 1.22522 0.88962 0.97225 0.93270 0.92214 0.92579 0.92466 0.90942 0.91021 0.86219 0.86238 0.86172 0.86246 0.87906 0.88234 0.90263 0.90247 0.95236 0.95128 0.80636 0.93042 0.92005 0.92663 0.92878 0.90472 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.72 37.16 0.36 -0.70 16 2 C -0.09 -0.86 5.38 -27.88 -0.15 -1.01 16 3 C -0.06 -0.69 5.13 -104.63 -0.54 -1.22 16 4 C -0.12 -1.20 9.68 -39.59 -0.38 -1.59 16 5 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 6 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 7 C -0.10 -1.11 9.68 -39.58 -0.38 -1.49 16 8 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 9 C -0.10 -0.99 4.14 -29.04 -0.12 -1.11 16 10 C 0.53 7.32 7.11 -10.98 -0.08 7.25 16 11 O -0.53 -9.70 16.30 5.56 0.09 -9.60 16 12 N -0.62 -7.98 3.32 -169.31 -0.56 -8.54 16 13 C 0.11 1.72 6.34 -2.41 -0.02 1.70 16 14 C -0.11 -1.55 2.76 -89.22 -0.25 -1.80 16 15 H 0.08 1.24 7.71 -51.93 -0.40 0.84 16 16 C 0.17 3.05 5.37 -4.05 -0.02 3.03 16 17 N -0.76 -17.78 5.26 -59.91 -0.32 -18.10 16 18 C -0.25 -6.93 10.47 -15.06 -0.16 -7.09 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 22 Si 0.88 22.62 27.74 -169.99 -4.71 17.91 16 23 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 26 C -0.10 -1.04 3.30 -89.22 -0.29 -1.34 16 27 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 28 C -0.14 -1.29 8.91 37.16 0.33 -0.96 16 29 C 0.10 0.96 6.47 -2.41 -0.02 0.95 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 6.80 -51.93 -0.35 0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 34 H 0.07 0.79 6.42 -51.93 -0.33 0.46 16 35 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.10 0.82 5.43 -51.93 -0.28 0.54 16 40 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 41 H 0.08 1.28 7.78 -51.93 -0.40 0.88 16 42 H 0.08 1.40 7.88 -51.93 -0.41 0.99 16 43 H 0.03 0.54 8.02 -51.93 -0.42 0.12 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.36 8.45 5.43 -40.82 -0.22 8.23 16 46 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.53 7.02 -51.93 -0.36 0.16 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -34.85 403.66 -10.37 -45.22 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.66 Total: 5.41 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -3.06 Total: -9.61 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.10 Total: -55.41 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.85 -10.37 -45.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106305684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.966 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds