Wall clock time and date at job start Tue Mar 31 2020 16:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47122 * 2 1 4 4 C 1.38248 * 120.00721 * 265.02296 * 3 2 1 5 5 C 1.38216 * 120.00363 * 180.02562 * 4 3 2 6 6 C 1.38252 * 119.99687 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00370 * 359.73721 * 6 5 4 8 8 C 1.38219 * 119.99305 * 85.00695 * 3 2 1 9 9 C 1.50697 * 120.00367 * 359.97438 * 8 3 2 10 10 C 1.50702 * 109.46725 * 85.00108 * 9 8 3 11 11 O 1.21278 * 120.00232 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99513 * 180.02562 * 10 9 8 13 13 C 1.48145 * 127.83336 * 179.97438 * 12 10 9 14 14 C 1.54395 * 104.61454 * 219.58574 * 13 12 10 15 15 H 1.09002 * 110.34481 * 95.00280 * 14 13 12 16 16 C 1.52998 * 110.43060 * 217.21687 * 14 13 12 17 17 N 1.46495 * 109.47115 * 292.06339 * 16 14 13 18 18 C 1.36937 * 120.00092 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00158 * 359.97438 * 18 17 16 20 20 C 1.38820 * 120.00235 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00033 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 119.99770 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47225 * 90.00052 * 22 20 18 24 24 H 1.48502 * 109.46976 * 209.99954 * 22 20 18 25 25 H 1.48503 * 109.47207 * 330.00015 * 22 20 18 26 26 C 1.54281 * 104.95731 * 336.13228 * 14 13 12 27 27 H 1.09003 * 110.34267 * 241.12661 * 26 14 13 28 28 C 1.53002 * 110.34138 * 118.97957 * 26 14 13 29 29 C 1.48140 * 127.83889 * 359.97438 * 12 10 9 30 30 H 1.08992 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47008 * 299.99590 * 1 2 3 32 32 H 1.09000 * 109.47061 * 59.98960 * 1 2 3 33 33 H 1.09000 * 109.46502 * 240.00473 * 2 1 3 34 34 H 1.08991 * 109.47299 * 120.00930 * 2 1 3 35 35 H 1.08005 * 119.99855 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.99801 * 179.97438 * 5 4 3 37 37 H 1.08005 * 119.99955 * 179.97438 * 6 5 4 38 38 H 1.07998 * 120.00429 * 180.27508 * 7 6 5 39 39 H 1.08997 * 109.47424 * 325.00542 * 9 8 3 40 40 H 1.08995 * 109.47401 * 205.00515 * 9 8 3 41 41 H 1.08990 * 110.41068 * 100.80264 * 13 12 10 42 42 H 1.09000 * 110.40585 * 338.36403 * 13 12 10 43 43 H 1.09003 * 109.47249 * 52.06179 * 16 14 13 44 44 H 1.09002 * 109.47127 * 172.06017 * 16 14 13 45 45 H 0.96998 * 120.00197 * 359.97438 * 17 16 14 46 46 H 0.97003 * 120.00016 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.47535 * 60.00013 * 28 26 14 48 48 H 1.09004 * 109.47280 * 179.97438 * 28 26 14 49 49 H 1.08996 * 109.47106 * 299.99843 * 28 26 14 50 50 H 1.08998 * 110.41105 * 21.63503 * 29 12 10 51 51 H 1.09004 * 110.40870 * 259.19384 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0380 -1.1927 5 6 2.8220 3.3409 -1.1925 6 6 2.9544 4.0272 0.0003 7 6 2.6205 3.4122 1.1922 8 6 2.1645 2.1070 1.1926 9 6 1.8056 1.4345 2.4926 10 6 2.9846 0.6370 2.9877 11 8 4.0149 0.6171 2.3481 12 7 2.8940 -0.0541 4.1413 13 6 3.9350 -0.8890 4.7846 14 6 3.1692 -2.1123 5.3332 15 1 3.2088 -2.9354 4.6197 16 6 3.7524 -2.5478 6.6790 17 7 5.1005 -3.0841 6.4765 18 6 5.8240 -3.5398 7.5461 19 1 5.4009 -3.5035 8.5391 20 6 7.1017 -4.0475 7.3543 21 7 7.7972 -4.4850 8.3824 22 14 7.8338 -4.1097 5.6369 23 1 8.5640 -2.8458 5.3640 24 1 8.7740 -5.2551 5.5408 25 1 6.7455 -4.2777 4.6406 26 6 1.7160 -1.6256 5.5106 27 1 1.4182 -1.6951 6.5569 28 6 0.7691 -2.4471 4.6334 29 6 1.7308 -0.1510 5.0536 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 2.2577 1.5018 -2.1245 36 1 3.0789 3.8229 -2.1242 37 1 3.3152 5.0452 0.0005 38 1 2.7197 3.9498 2.1236 39 1 0.9570 0.7688 2.3353 40 1 1.5420 2.1906 3.2321 41 1 4.4114 -0.3425 5.5984 42 1 4.6773 -1.2032 4.0508 43 1 3.7997 -1.6895 7.3493 44 1 3.1174 -3.3172 7.1182 45 1 5.4804 -3.1171 5.5846 46 1 8.6899 -4.8401 8.2483 47 1 0.8295 -3.4975 4.9182 48 1 -0.2524 -2.0922 4.7699 49 1 1.0556 -2.3372 3.5876 50 1 0.8102 0.0916 4.5229 51 1 1.8630 0.5108 5.9096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106305684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:42 Heat of formation + Delta-G solvation = -29.651690 kcal Electronic energy + Delta-G solvation = -28667.599245 eV Core-core repulsion = 24951.574774 eV Total energy + Delta-G solvation = -3716.024471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.49328 -40.37064 -38.93653 -36.59078 -35.22973 -34.19035 -33.48983 -33.19008 -31.10149 -30.38229 -28.90699 -27.40696 -26.78847 -24.85291 -24.59070 -23.04412 -22.54704 -21.55007 -21.05411 -20.26112 -19.52623 -18.12893 -17.39146 -17.35023 -16.77810 -16.50183 -16.36219 -15.93347 -15.76252 -15.49423 -14.96950 -14.82799 -14.70230 -14.45175 -14.31287 -14.16871 -13.96801 -13.90095 -13.82889 -13.56162 -13.26443 -13.05358 -12.94204 -12.82484 -12.69866 -12.65509 -12.53182 -12.17565 -12.10035 -11.88879 -11.77454 -11.70458 -11.62539 -11.58038 -11.44845 -11.02747 -10.94593 -9.75371 -9.70415 -9.49079 -9.31438 -8.05887 -5.38044 0.40625 0.50447 1.33677 1.36084 1.41934 1.59957 1.95218 2.43878 2.85913 3.26277 3.36348 3.58477 3.64307 3.77941 3.83093 3.85063 3.99189 4.07454 4.08212 4.25486 4.28756 4.32170 4.34752 4.46557 4.47438 4.49706 4.55991 4.62363 4.68495 4.72353 4.73515 4.79748 4.84686 4.92289 5.00773 5.04669 5.07136 5.07766 5.16153 5.21545 5.22913 5.27306 5.32893 5.38894 5.54783 5.58055 5.61839 5.73504 5.74272 6.13596 6.18883 6.58022 7.05220 7.13490 7.82568 7.98956 9.15685 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.002871 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.719526 B = 9750.930512 C =10556.827441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.134 4.134 5 C -0.125 4.125 6 C -0.136 4.136 7 C -0.120 4.120 8 C -0.082 4.082 9 C -0.090 4.090 10 C 0.529 3.471 11 O -0.586 6.586 12 N -0.621 5.621 13 C 0.112 3.888 14 C -0.097 4.097 15 H 0.072 0.928 16 C 0.165 3.835 17 N -0.762 5.762 18 C -0.229 4.229 19 H 0.064 0.936 20 C -0.060 4.060 21 N -0.981 5.981 22 Si 0.945 3.055 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.258 1.258 26 C -0.094 4.094 27 H 0.105 0.895 28 C -0.138 4.138 29 C 0.103 3.897 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.362 0.638 46 H 0.258 0.742 47 H 0.052 0.948 48 H 0.084 0.916 49 H 0.046 0.954 50 H 0.114 0.886 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.580 16.315 -17.930 33.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.151 4.151 5 C -0.143 4.143 6 C -0.154 4.154 7 C -0.138 4.138 8 C -0.082 4.082 9 C -0.129 4.129 10 C 0.320 3.680 11 O -0.466 6.466 12 N -0.355 5.355 13 C -0.011 4.011 14 C -0.117 4.117 15 H 0.090 0.910 16 C 0.039 3.961 17 N -0.407 5.407 18 C -0.360 4.360 19 H 0.082 0.918 20 C -0.252 4.252 21 N -0.632 5.632 22 Si 0.773 3.227 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.183 1.183 26 C -0.113 4.113 27 H 0.123 0.877 28 C -0.195 4.195 29 C -0.019 4.019 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.194 0.806 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.103 0.897 49 H 0.065 0.935 50 H 0.132 0.868 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.032 16.326 -18.144 33.559 hybrid contribution 1.669 -0.486 -0.559 1.827 sum -21.362 15.839 -18.703 32.512 Atomic orbital electron populations 1.21733 0.92656 1.02634 1.02703 1.20560 0.97647 0.92027 1.02251 1.19937 0.98592 0.96294 0.93039 1.21263 1.00278 0.95762 0.97839 1.21428 0.99121 0.94785 0.98975 1.21382 1.00503 1.01019 0.92493 1.21262 0.98707 0.94716 0.99094 1.19355 1.00779 0.94422 0.93681 1.20731 0.96074 1.00239 0.95836 1.20823 0.89783 0.78791 0.78604 1.90724 1.33673 1.64853 1.57337 1.49135 1.16506 1.47922 1.21889 1.22234 0.91244 0.91511 0.96137 1.22287 0.96203 0.96516 0.96695 0.91003 1.20901 0.84173 0.96192 0.94803 1.42825 1.15974 1.76398 1.05539 1.19068 0.96319 1.31698 0.88940 0.91827 1.25398 0.97654 1.01700 1.00408 1.69857 1.12561 1.49752 1.31056 0.85553 0.78562 0.77197 0.81344 1.21001 1.21882 1.18272 1.22123 0.92486 0.94469 1.02237 0.87656 1.21817 0.99439 0.99649 0.98599 1.22803 0.88991 0.96597 0.93502 0.91319 0.91697 0.92088 0.91193 0.92758 0.84909 0.84180 0.84327 0.85135 0.85679 0.85520 0.91443 0.93355 0.94835 0.94657 0.80552 0.93329 0.92871 0.89666 0.93528 0.86792 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.72 71.98 0.70 -0.99 16 2 C -0.09 -1.58 5.38 29.85 0.16 -1.41 16 3 C -0.08 -1.63 5.13 -19.87 -0.10 -1.74 16 4 C -0.13 -2.57 9.68 22.27 0.22 -2.35 16 5 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 6 C -0.14 -2.49 10.05 22.27 0.22 -2.26 16 7 C -0.12 -2.39 9.68 22.27 0.22 -2.17 16 8 C -0.08 -1.71 4.37 -19.86 -0.09 -1.79 16 9 C -0.09 -1.53 4.14 29.10 0.12 -1.40 16 10 C 0.53 13.93 7.11 87.66 0.62 14.55 16 11 O -0.59 -21.70 16.30 -3.02 -0.05 -21.75 16 12 N -0.62 -14.83 3.32 -807.96 -2.68 -17.51 16 13 C 0.11 3.41 6.34 86.54 0.55 3.96 16 14 C -0.10 -2.68 2.76 -9.89 -0.03 -2.71 16 15 H 0.07 2.14 7.71 -2.39 -0.02 2.12 16 16 C 0.17 5.87 5.37 86.38 0.46 6.34 16 17 N -0.76 -35.77 5.26 -343.45 -1.81 -37.58 16 18 C -0.23 -13.16 10.47 84.04 0.88 -12.28 16 19 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 20 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 21 N -0.98 -63.71 13.97 21.65 0.30 -63.41 16 22 Si 0.95 47.48 27.74 68.60 1.90 49.39 16 23 H -0.28 -14.17 7.11 99.48 0.71 -13.47 16 24 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 25 H -0.26 -11.95 6.52 99.48 0.65 -11.30 16 26 C -0.09 -1.65 3.30 -9.89 -0.03 -1.68 16 27 H 0.11 1.64 7.71 -2.39 -0.02 1.62 16 28 C -0.14 -2.02 8.91 71.98 0.64 -1.37 16 29 C 0.10 1.52 6.47 86.53 0.56 2.08 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.66 6.80 -2.39 -0.02 0.65 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 34 H 0.05 1.16 6.42 -2.39 -0.02 1.14 16 35 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 36 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.13 1.53 5.43 -2.39 -0.01 1.52 16 40 H 0.13 1.45 8.05 -2.39 -0.02 1.43 16 41 H 0.07 2.19 7.78 -2.39 -0.02 2.17 16 42 H 0.05 1.76 7.88 -2.39 -0.02 1.74 16 43 H 0.03 1.19 8.02 -2.39 -0.02 1.17 16 44 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.36 16.83 5.43 -92.71 -0.50 16.32 16 46 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 47 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 50 H 0.11 0.92 7.02 -2.39 -0.02 0.90 16 51 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -78.86 403.66 3.81 -75.06 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.34 Total: 26.19 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 5.80 Total: -10.38 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -4.18 Total: -118.50 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.90 Total: 49.39 kcal Total: -78.86 3.81 -75.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106305684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.404 kcal (2) G-P(sol) polarization free energy of solvation -78.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds