Wall clock time and date at job start Tue Mar 31 2020 16:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47203 * 2 1 4 4 C 1.38256 * 119.99963 * 269.72778 * 3 2 1 5 5 C 1.38218 * 120.00084 * 180.36635 * 4 3 2 6 6 C 1.38254 * 119.99695 * 359.86103 * 5 4 3 7 7 C 1.38212 * 120.00305 * 0.09098 * 6 5 4 8 8 C 1.50696 * 119.99840 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47101 * 270.02019 * 8 7 6 10 10 O 1.21276 * 120.00337 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99889 * 180.02562 * 9 8 7 12 12 C 1.47490 * 127.03347 * 179.97438 * 11 9 8 13 13 C 1.54007 * 107.08094 * 154.51922 * 12 11 9 14 14 H 1.09007 * 110.32451 * 120.19924 * 13 12 11 15 15 C 1.52998 * 110.32489 * 242.30871 * 13 12 11 16 16 N 1.46496 * 109.47345 * 293.55130 * 15 13 12 17 17 C 1.36939 * 120.00053 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00005 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00180 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99900 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47091 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47155 * 120.00102 * 21 19 17 24 24 H 1.48498 * 109.47233 * 240.00216 * 21 19 17 25 25 C 1.54608 * 105.04684 * 1.30951 * 13 12 11 26 26 H 1.09009 * 110.74006 * 263.51030 * 25 13 12 27 27 C 1.53005 * 110.74450 * 140.36882 * 25 13 12 28 28 C 1.48122 * 127.03497 * 359.68789 * 11 9 8 29 29 C 1.38215 * 120.00248 * 89.99828 * 3 2 1 30 30 H 1.09003 * 109.46940 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47252 * 299.99822 * 1 2 3 32 32 H 1.09001 * 109.47176 * 60.00391 * 1 2 3 33 33 H 1.09003 * 109.47252 * 240.00178 * 2 1 3 34 34 H 1.09006 * 109.47616 * 119.99766 * 2 1 3 35 35 H 1.08001 * 120.00211 * 0.27430 * 4 3 2 36 36 H 1.07997 * 119.99848 * 179.97438 * 5 4 3 37 37 H 1.08000 * 119.99718 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47460 * 30.02353 * 8 7 6 39 39 H 1.09001 * 109.46884 * 150.02018 * 8 7 6 40 40 H 1.09000 * 109.91087 * 273.88101 * 12 11 9 41 41 H 1.09000 * 109.91041 * 35.15865 * 12 11 9 42 42 H 1.08998 * 109.47152 * 53.55072 * 15 13 12 43 43 H 1.09002 * 109.47198 * 173.55013 * 15 13 12 44 44 H 0.97002 * 120.00165 * 359.97438 * 16 15 13 45 45 H 0.96998 * 120.00074 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.46770 * 59.99336 * 27 25 13 47 47 H 1.08999 * 109.47435 * 179.97438 * 27 25 13 48 48 H 1.09004 * 109.46675 * 300.00005 * 27 25 13 49 49 H 1.08995 * 110.65902 * 337.76967 * 28 11 9 50 50 H 1.08999 * 110.66321 * 100.88121 * 28 11 9 51 51 H 1.08000 * 119.99286 * 359.70252 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0707 -1.1973 5 6 2.7361 3.3712 -1.1973 6 6 2.9656 4.0232 0.0000 7 6 2.7289 3.3740 1.1970 8 6 2.9797 4.0845 2.5020 9 6 4.4008 3.8421 2.9410 10 8 5.1376 3.1599 2.2609 11 7 4.8530 4.3834 4.0894 12 6 6.2048 4.2481 4.6634 13 6 6.4450 5.4833 5.5514 14 1 6.6351 5.1785 6.5806 15 6 7.6204 6.3028 5.0151 16 7 8.8574 5.5300 5.1521 17 6 10.0478 6.0636 4.7355 18 1 10.0747 7.0543 4.3063 19 6 11.2200 5.3316 4.8658 20 7 11.1873 4.1244 5.3893 21 14 12.8439 6.0598 4.2981 22 1 12.6118 7.4207 3.7509 23 1 13.7786 6.1424 5.4491 24 1 13.4323 5.1955 3.2437 25 6 5.1349 6.2997 5.4662 26 1 5.2182 7.0863 4.7162 27 6 4.7752 6.8910 6.8308 28 6 4.0957 5.2408 5.0304 29 6 2.2627 2.0724 1.1969 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0881 1.5616 -2.1327 36 1 2.9206 3.8787 -2.1326 37 1 3.3309 5.0396 0.0000 38 1 2.8176 5.1543 2.3703 39 1 2.2953 3.7040 3.2602 40 1 6.2635 3.3411 5.2652 41 1 6.9457 4.2153 3.8646 42 1 7.4517 6.5350 3.9636 43 1 7.7062 7.2295 5.5826 44 1 8.8334 4.6404 5.5379 45 1 12.0063 3.6128 5.4800 46 1 5.5782 7.5480 7.1651 47 1 3.8503 7.4617 6.7471 48 1 4.6412 6.0849 7.5521 49 1 3.2533 5.7143 4.5264 50 1 3.7555 4.6622 5.8893 51 1 2.0780 1.5649 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106333776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:46 Heat of formation + Delta-G solvation = -16.179223 kcal Electronic energy + Delta-G solvation = -27836.115974 eV Core-core repulsion = 24120.675714 eV Total energy + Delta-G solvation = -3715.440261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.28952 -39.39225 -37.77067 -34.61156 -34.59369 -32.89802 -32.44176 -31.39159 -29.74582 -29.23161 -27.72011 -26.29708 -25.19959 -24.12361 -23.25453 -22.17990 -21.20758 -20.70309 -19.72303 -19.04747 -17.26425 -16.73962 -16.65232 -16.16254 -15.82907 -15.33887 -14.96672 -14.74015 -14.33697 -14.09983 -13.90376 -13.77616 -13.52624 -13.40299 -13.19897 -13.07433 -12.85962 -12.77740 -12.58285 -12.20696 -12.13522 -11.92351 -11.88247 -11.69534 -11.46686 -11.41153 -11.08563 -11.01400 -10.91878 -10.85905 -10.59324 -10.47954 -10.28774 -9.94642 -9.74924 -9.63821 -8.86550 -8.85290 -8.68433 -8.51481 -6.89805 -5.73579 -3.02422 1.24387 1.33078 2.76045 3.05844 3.45925 3.51220 3.53676 3.69878 4.46075 4.52235 4.54377 4.57647 4.64509 4.71441 4.84171 4.91691 4.99983 5.04511 5.09046 5.12522 5.25568 5.28657 5.35696 5.38157 5.40874 5.48511 5.49234 5.52679 5.61300 5.65663 5.67039 5.73153 5.79309 5.88086 5.97110 6.01262 6.01645 6.09511 6.17256 6.21241 6.31069 6.38065 6.45509 6.48075 6.50282 6.52519 6.73858 6.88698 6.92934 7.68395 7.73140 8.31225 8.45008 9.56295 10.13287 10.47761 11.49353 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.002504 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.384515 B =11180.554528 C =12465.792809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.061 4.061 8 C -0.097 4.097 9 C 0.529 3.471 10 O -0.527 6.527 11 N -0.622 5.622 12 C 0.112 3.888 13 C -0.102 4.102 14 H 0.086 0.914 15 C 0.163 3.837 16 N -0.732 5.732 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.291 1.291 25 C -0.101 4.101 26 H 0.083 0.917 27 C -0.139 4.139 28 C 0.103 3.897 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.077 0.923 50 H 0.073 0.927 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.684 -1.293 -5.534 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.061 4.061 8 C -0.137 4.137 9 C 0.317 3.683 10 O -0.402 6.402 11 N -0.357 5.357 12 C -0.010 4.010 13 C -0.122 4.122 14 H 0.104 0.896 15 C 0.035 3.965 16 N -0.377 5.377 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.120 4.120 26 H 0.102 0.898 27 C -0.197 4.197 28 C -0.020 4.020 29 C -0.120 4.120 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.190 -1.609 -6.074 26.933 hybrid contribution 1.098 0.140 -0.076 1.109 sum -25.092 -1.469 -6.150 25.876 Atomic orbital electron populations 1.21742 0.94811 1.01586 1.02120 1.20541 0.96034 0.92766 1.02950 1.19815 0.99317 0.96069 0.93095 1.20982 1.00407 0.95028 0.97361 1.21068 0.99484 0.95004 0.97858 1.20968 0.99536 1.00132 0.92004 1.19259 0.98821 0.94427 0.93624 1.20646 0.94668 1.02307 0.96054 1.20089 0.89197 0.79676 0.79378 1.90768 1.58116 1.38402 1.52960 1.48869 1.14201 1.50902 1.21686 1.22161 0.83531 0.97590 0.97752 1.22383 0.94952 0.94873 0.99981 0.89587 1.20690 0.85348 0.93479 0.96956 1.42371 1.01914 1.18238 1.75142 1.19250 0.85130 0.99385 1.33230 0.91189 1.24744 0.97865 0.96544 1.01841 1.69666 1.26963 1.10946 1.50519 0.86123 0.84163 0.78086 0.77856 1.20584 1.21887 1.21847 1.22231 0.94356 0.97096 0.98350 0.89822 1.21729 1.01437 1.00947 0.95588 1.22580 0.94939 0.91747 0.92755 1.20809 0.99742 0.93880 0.97571 0.92489 0.92589 0.92626 0.91060 0.91007 0.86362 0.86104 0.86272 0.88120 0.88242 0.91915 0.89193 0.96343 0.96069 0.78255 0.93558 0.91764 0.92698 0.92424 0.90502 0.90894 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.09 -0.72 6.07 -27.88 -0.17 -0.89 16 3 C -0.08 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 5 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 7 C -0.06 -0.73 4.37 -104.63 -0.46 -1.19 16 8 C -0.10 -1.02 4.76 -29.04 -0.14 -1.16 16 9 C 0.53 8.04 7.88 -10.99 -0.09 7.95 16 10 O -0.53 -10.63 16.37 5.56 0.09 -10.54 16 11 N -0.62 -8.83 3.29 -169.96 -0.56 -9.39 16 12 C 0.11 1.90 6.31 -2.97 -0.02 1.88 16 13 C -0.10 -1.59 2.64 -89.25 -0.24 -1.83 16 14 H 0.09 1.34 7.85 -51.93 -0.41 0.93 16 15 C 0.16 3.27 5.35 -4.05 -0.02 3.24 16 16 N -0.73 -18.75 5.33 -59.91 -0.32 -19.07 16 17 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 21 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 C -0.10 -1.15 3.19 -88.92 -0.28 -1.43 16 26 H 0.08 0.99 7.87 -51.92 -0.41 0.58 16 27 C -0.14 -1.30 9.17 37.16 0.34 -0.96 16 28 C 0.10 1.04 6.39 -2.30 -0.01 1.02 16 29 C -0.10 -1.18 9.36 -39.58 -0.37 -1.55 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.10 0.85 7.84 -51.93 -0.41 0.44 16 39 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.91 7.48 -51.93 -0.39 1.52 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.38 10.31 7.51 -40.82 -0.31 10.00 16 45 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 49 H 0.08 0.58 7.23 -51.93 -0.38 0.20 16 50 H 0.07 0.65 8.02 -51.93 -0.42 0.23 16 51 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 414.06 15.07 6.24 6.24 Total: -1.00 -34.93 414.06 -10.89 -45.83 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -9.01 Total: 6.49 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -3.04 Total: -9.42 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.15 Total: -56.52 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.93 -10.89 -45.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106333776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.648 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds