Wall clock time and date at job start Tue Mar 31 2020 16:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47203 * 2 1 4 4 C 1.38256 * 119.99963 * 269.72778 * 3 2 1 5 5 C 1.38218 * 120.00084 * 180.36635 * 4 3 2 6 6 C 1.38254 * 119.99695 * 359.86103 * 5 4 3 7 7 C 1.38212 * 120.00305 * 0.09098 * 6 5 4 8 8 C 1.50696 * 119.99840 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47101 * 270.02019 * 8 7 6 10 10 O 1.21276 * 120.00337 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99889 * 180.02562 * 9 8 7 12 12 C 1.47490 * 127.03347 * 179.97438 * 11 9 8 13 13 C 1.54007 * 107.08094 * 154.51922 * 12 11 9 14 14 H 1.09007 * 110.32451 * 120.19924 * 13 12 11 15 15 C 1.52998 * 110.32489 * 242.30871 * 13 12 11 16 16 N 1.46496 * 109.47345 * 293.55130 * 15 13 12 17 17 C 1.36939 * 120.00053 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00005 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00180 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99900 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47091 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47155 * 120.00102 * 21 19 17 24 24 H 1.48498 * 109.47233 * 240.00216 * 21 19 17 25 25 C 1.54608 * 105.04684 * 1.30951 * 13 12 11 26 26 H 1.09009 * 110.74006 * 263.51030 * 25 13 12 27 27 C 1.53005 * 110.74450 * 140.36882 * 25 13 12 28 28 C 1.48122 * 127.03497 * 359.68789 * 11 9 8 29 29 C 1.38215 * 120.00248 * 89.99828 * 3 2 1 30 30 H 1.09003 * 109.46940 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47252 * 299.99822 * 1 2 3 32 32 H 1.09001 * 109.47176 * 60.00391 * 1 2 3 33 33 H 1.09003 * 109.47252 * 240.00178 * 2 1 3 34 34 H 1.09006 * 109.47616 * 119.99766 * 2 1 3 35 35 H 1.08001 * 120.00211 * 0.27430 * 4 3 2 36 36 H 1.07997 * 119.99848 * 179.97438 * 5 4 3 37 37 H 1.08000 * 119.99718 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47460 * 30.02353 * 8 7 6 39 39 H 1.09001 * 109.46884 * 150.02018 * 8 7 6 40 40 H 1.09000 * 109.91087 * 273.88101 * 12 11 9 41 41 H 1.09000 * 109.91041 * 35.15865 * 12 11 9 42 42 H 1.08998 * 109.47152 * 53.55072 * 15 13 12 43 43 H 1.09002 * 109.47198 * 173.55013 * 15 13 12 44 44 H 0.97002 * 120.00165 * 359.97438 * 16 15 13 45 45 H 0.96998 * 120.00074 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.46770 * 59.99336 * 27 25 13 47 47 H 1.08999 * 109.47435 * 179.97438 * 27 25 13 48 48 H 1.09004 * 109.46675 * 300.00005 * 27 25 13 49 49 H 1.08995 * 110.65902 * 337.76967 * 28 11 9 50 50 H 1.08999 * 110.66321 * 100.88121 * 28 11 9 51 51 H 1.08000 * 119.99286 * 359.70252 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0707 -1.1973 5 6 2.7361 3.3712 -1.1973 6 6 2.9656 4.0232 0.0000 7 6 2.7289 3.3740 1.1970 8 6 2.9797 4.0845 2.5020 9 6 4.4008 3.8421 2.9410 10 8 5.1376 3.1599 2.2609 11 7 4.8530 4.3834 4.0894 12 6 6.2048 4.2481 4.6634 13 6 6.4450 5.4833 5.5514 14 1 6.6351 5.1785 6.5806 15 6 7.6204 6.3028 5.0151 16 7 8.8574 5.5300 5.1521 17 6 10.0478 6.0636 4.7355 18 1 10.0747 7.0543 4.3063 19 6 11.2200 5.3316 4.8658 20 7 11.1873 4.1244 5.3893 21 14 12.8439 6.0598 4.2981 22 1 12.6118 7.4207 3.7509 23 1 13.7786 6.1424 5.4491 24 1 13.4323 5.1955 3.2437 25 6 5.1349 6.2997 5.4662 26 1 5.2182 7.0863 4.7162 27 6 4.7752 6.8910 6.8308 28 6 4.0957 5.2408 5.0304 29 6 2.2627 2.0724 1.1969 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0881 1.5616 -2.1327 36 1 2.9206 3.8787 -2.1326 37 1 3.3309 5.0396 0.0000 38 1 2.8176 5.1543 2.3703 39 1 2.2953 3.7040 3.2602 40 1 6.2635 3.3411 5.2652 41 1 6.9457 4.2153 3.8646 42 1 7.4517 6.5350 3.9636 43 1 7.7062 7.2295 5.5826 44 1 8.8334 4.6404 5.5379 45 1 12.0063 3.6128 5.4800 46 1 5.5782 7.5480 7.1651 47 1 3.8503 7.4617 6.7471 48 1 4.6412 6.0849 7.5521 49 1 3.2533 5.7143 4.5264 50 1 3.7555 4.6622 5.8893 51 1 2.0780 1.5649 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106333776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:45 Heat of formation + Delta-G solvation = -36.387522 kcal Electronic energy + Delta-G solvation = -27836.992272 eV Core-core repulsion = 24120.675714 eV Total energy + Delta-G solvation = -3716.316558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.37016 -40.30350 -38.98374 -36.46172 -35.34068 -34.22143 -33.30687 -33.07753 -30.85561 -30.34628 -28.81803 -27.17251 -26.79768 -25.04530 -24.79287 -23.09543 -22.49747 -21.55234 -20.91942 -20.12898 -19.19894 -18.01180 -17.50610 -17.22861 -16.78572 -16.66688 -16.31575 -15.84440 -15.62098 -15.35938 -15.20421 -14.96803 -14.65148 -14.54027 -14.16404 -14.04115 -13.96470 -13.82227 -13.64945 -13.24452 -13.13310 -13.00237 -12.92462 -12.79540 -12.78782 -12.59663 -12.50155 -12.16255 -12.12105 -11.97435 -11.86033 -11.69427 -11.64272 -11.48167 -11.36765 -11.01261 -10.95284 -9.72276 -9.69362 -9.50679 -9.03924 -7.98782 -5.27872 0.40295 0.50220 1.43208 1.45164 1.54869 1.61745 1.98069 2.52525 2.85493 3.34472 3.47492 3.57072 3.66244 3.76603 3.82062 3.95673 4.00081 4.19484 4.21771 4.25220 4.27985 4.35962 4.46654 4.48243 4.53655 4.56035 4.57535 4.61434 4.68225 4.68904 4.76739 4.79828 4.90236 4.94348 5.00421 5.03646 5.08962 5.12875 5.18826 5.22065 5.22991 5.28000 5.38433 5.39623 5.45212 5.56405 5.58709 5.65273 5.71951 6.13381 6.23636 6.58571 7.15891 7.29559 8.05209 8.27949 9.25063 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.002504 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.384515 B =11180.554528 C =12465.792809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.129 4.129 7 C -0.078 4.078 8 C -0.084 4.084 9 C 0.521 3.479 10 O -0.590 6.590 11 N -0.621 5.621 12 C 0.116 3.884 13 C -0.093 4.093 14 H 0.088 0.912 15 C 0.163 3.837 16 N -0.745 5.745 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.265 1.265 23 H -0.289 1.289 24 H -0.296 1.296 25 C -0.092 4.092 26 H 0.082 0.918 27 C -0.134 4.134 28 C 0.104 3.896 29 C -0.119 4.119 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.057 0.943 41 H 0.036 0.964 42 H 0.006 0.994 43 H 0.031 0.969 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.051 0.949 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.117 0.883 50 H 0.096 0.904 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.351 0.076 -5.202 29.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.145 4.145 6 C -0.147 4.147 7 C -0.078 4.078 8 C -0.123 4.123 9 C 0.312 3.688 10 O -0.470 6.470 11 N -0.354 5.354 12 C -0.008 4.008 13 C -0.112 4.112 14 H 0.106 0.894 15 C 0.037 3.963 16 N -0.388 5.388 17 C -0.377 4.377 18 H 0.092 0.908 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.190 1.190 23 H -0.215 1.215 24 H -0.223 1.223 25 C -0.111 4.111 26 H 0.100 0.900 27 C -0.192 4.192 28 C -0.017 4.017 29 C -0.137 4.137 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.024 0.976 43 H 0.049 0.951 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.135 0.865 50 H 0.114 0.886 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -28.916 -0.176 -5.719 29.477 hybrid contribution 1.903 -0.286 -0.217 1.937 sum -27.013 -0.462 -5.936 27.661 Atomic orbital electron populations 1.21705 0.93481 1.02447 1.02128 1.20588 0.97144 0.91421 1.03147 1.20157 0.98891 0.97129 0.93051 1.21288 1.00107 0.95107 0.98208 1.21378 0.99215 0.95420 0.98447 1.21218 1.00129 1.00777 0.92554 1.19513 0.99075 0.94895 0.94358 1.20685 0.91441 1.04067 0.96117 1.21033 0.90648 0.78412 0.78695 1.90737 1.60128 1.41266 1.54878 1.48985 1.13306 1.51044 1.22075 1.21873 0.84419 0.98279 0.96195 1.22266 0.95530 0.94345 0.99065 0.89357 1.20828 0.85043 0.93969 0.96453 1.42598 1.03097 1.18260 1.74844 1.19662 0.86393 0.99471 1.32223 0.90758 1.25609 1.01464 0.97125 1.02778 1.69825 1.27553 1.12375 1.52280 0.85061 0.79689 0.77810 0.77136 1.18955 1.21538 1.22291 1.22235 0.91961 0.96919 1.00013 0.89955 1.21706 1.02335 1.01189 0.93930 1.22906 0.94969 0.90889 0.92952 1.21054 1.00203 0.94099 0.98324 0.91194 0.92715 0.92469 0.90447 0.91238 0.84483 0.84418 0.85700 0.85297 0.85033 0.92514 0.94490 0.97635 0.95143 0.79485 0.93979 0.92992 0.89768 0.91637 0.86493 0.88639 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.89 71.98 0.71 -1.01 16 2 C -0.09 -1.36 6.07 29.85 0.18 -1.18 16 3 C -0.09 -1.93 5.13 -19.86 -0.10 -2.03 16 4 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 5 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 6 C -0.13 -2.99 9.70 22.27 0.22 -2.77 16 7 C -0.08 -1.81 4.37 -19.87 -0.09 -1.89 16 8 C -0.08 -1.58 4.76 29.10 0.14 -1.44 16 9 C 0.52 15.67 7.88 87.66 0.69 16.36 16 10 O -0.59 -24.87 16.37 -3.02 -0.05 -24.92 16 11 N -0.62 -17.07 3.29 -810.01 -2.67 -19.74 16 12 C 0.12 4.09 6.31 86.53 0.55 4.63 16 13 C -0.09 -2.86 2.64 -9.91 -0.03 -2.89 16 14 H 0.09 2.71 7.85 -2.38 -0.02 2.69 16 15 C 0.16 6.67 5.35 86.38 0.46 7.13 16 16 N -0.75 -39.47 5.33 -343.46 -1.83 -41.30 16 17 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 18 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 19 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 20 N -0.97 -61.67 13.06 21.65 0.28 -61.39 16 21 Si 0.97 47.92 29.55 68.60 2.03 49.94 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 25 C -0.09 -1.85 3.19 -9.69 -0.03 -1.88 16 26 H 0.08 1.73 7.87 -2.38 -0.02 1.71 16 27 C -0.13 -2.02 9.17 71.98 0.66 -1.36 16 28 C 0.10 1.71 6.39 86.62 0.55 2.27 16 29 C -0.12 -2.68 9.36 22.27 0.21 -2.48 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 34 H 0.07 1.12 8.09 -2.38 -0.02 1.10 16 35 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.13 1.69 7.84 -2.39 -0.02 1.67 16 39 H 0.13 1.62 8.09 -2.39 -0.02 1.61 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.69 7.48 -2.39 -0.02 1.67 16 42 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.37 21.02 7.51 -92.71 -0.70 20.32 16 45 H 0.25 15.43 8.31 -92.71 -0.77 14.65 16 46 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 49 H 0.12 1.09 7.23 -2.39 -0.02 1.07 16 50 H 0.10 1.24 8.02 -2.39 -0.02 1.23 16 51 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -80.61 414.06 3.82 -76.78 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.19 Total: 31.69 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 5.87 Total: -11.07 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -4.22 Total: -122.43 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.94 kcal Total: -80.61 3.82 -76.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106333776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.395 kcal (2) G-P(sol) polarization free energy of solvation -80.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds