Wall clock time and date at job start Tue Mar 31 2020 16:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46934 * 2 1 4 4 C 1.38235 * 120.00247 * 89.99874 * 3 2 1 5 5 C 1.38238 * 119.99788 * 180.02562 * 4 3 2 6 6 C 1.38227 * 120.00079 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00029 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47266 * 89.99839 * 7 6 5 9 9 O 1.21279 * 120.00113 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99961 * 180.02562 * 8 7 6 11 11 C 1.47481 * 127.03335 * 179.97438 * 10 8 7 12 12 C 1.53998 * 107.08415 * 154.51448 * 11 10 8 13 13 H 1.09004 * 110.32555 * 120.19872 * 12 11 10 14 14 C 1.52997 * 110.33466 * 242.31488 * 12 11 10 15 15 N 1.46506 * 109.46680 * 293.55253 * 14 12 11 16 16 C 1.36943 * 119.99409 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00543 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99638 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99973 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00192 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46791 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47372 * 119.99350 * 20 18 16 23 23 H 1.48499 * 109.46895 * 239.99775 * 20 18 16 24 24 C 1.54620 * 105.04438 * 1.31124 * 12 11 10 25 25 H 1.08994 * 110.73756 * 263.51032 * 24 12 11 26 26 C 1.53003 * 110.73920 * 140.36077 * 24 12 11 27 27 C 1.48118 * 127.03299 * 359.68624 * 10 8 7 28 28 C 1.38238 * 120.00336 * 0.25244 * 6 5 4 29 29 C 1.38231 * 119.99652 * 359.49786 * 28 6 5 30 30 H 1.09004 * 109.47036 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47315 * 299.99598 * 1 2 3 32 32 H 1.08993 * 109.47674 * 60.00199 * 1 2 3 33 33 H 1.09000 * 109.46987 * 239.99986 * 2 1 3 34 34 H 1.09004 * 109.47191 * 119.99931 * 2 1 3 35 35 H 1.08001 * 119.99898 * 0.02562 * 4 3 2 36 36 H 1.07995 * 119.99336 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47205 * 329.99932 * 7 6 5 38 38 H 1.08997 * 109.47395 * 210.00425 * 7 6 5 39 39 H 1.08997 * 109.91691 * 273.88587 * 11 10 8 40 40 H 1.09007 * 109.91002 * 34.96364 * 11 10 8 41 41 H 1.09003 * 109.46672 * 53.53938 * 14 12 11 42 42 H 1.08992 * 109.47578 * 173.54898 * 14 12 11 43 43 H 0.96991 * 120.00160 * 359.97438 * 15 14 12 44 44 H 0.97001 * 119.99812 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.46782 * 60.00408 * 26 24 12 46 46 H 1.09004 * 109.46901 * 179.97438 * 26 24 12 47 47 H 1.08991 * 109.47374 * 300.00058 * 26 24 12 48 48 H 1.09000 * 110.66016 * 337.77172 * 27 10 8 49 49 H 1.09001 * 110.66208 * 100.88448 * 27 10 8 50 50 H 1.07998 * 119.99845 * 179.72455 * 28 6 5 51 51 H 1.08004 * 120.00339 * 180.23091 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3760 1.1970 6 6 2.9523 4.0279 -0.0001 7 6 3.4534 5.4491 -0.0002 8 6 4.9604 5.4504 -0.0008 9 8 5.5677 4.4006 -0.0016 10 7 5.6334 6.6182 -0.0005 11 6 7.0970 6.8000 -0.0005 12 6 7.3821 8.1746 -0.6335 13 1 7.9099 8.8149 0.0735 14 6 8.2020 8.0102 -1.9147 15 7 9.5333 7.4984 -1.5801 16 6 10.4484 7.2700 -2.5730 17 1 10.1886 7.4667 -3.6026 18 6 11.7100 6.7855 -2.2560 19 7 12.0269 6.5462 -1.0010 20 14 12.9581 6.4732 -3.6103 21 1 12.3593 6.8190 -4.9245 22 1 14.1611 7.3122 -3.3779 23 1 13.3458 5.0397 -3.6051 24 6 5.9897 8.7645 -0.9562 25 1 5.7231 8.5777 -1.9964 26 6 5.9519 10.2631 -0.6499 27 6 5.0543 7.9815 -0.0060 28 6 2.7164 3.3782 -1.1973 29 6 2.2611 2.0730 -1.1972 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0831 1.5633 2.1324 36 1 2.9025 3.8853 2.1323 37 1 3.0901 5.9626 0.8900 38 1 3.0893 5.9628 -0.8899 39 1 7.4740 6.7766 1.0219 40 1 7.5689 6.0124 -0.5880 41 1 7.6995 7.3080 -2.5799 42 1 8.2981 8.9758 -2.4111 43 1 9.7665 7.3213 -0.6554 44 1 12.9086 6.2080 -0.7795 45 1 6.7001 10.7763 -1.2540 46 1 4.9631 10.6570 -0.8849 47 1 6.1656 10.4235 0.4067 48 1 4.0367 7.9655 -0.3963 49 1 5.0768 8.4130 0.9947 50 1 2.8914 3.8891 -2.1325 51 1 2.0804 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106712818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:51 Heat of formation + Delta-G solvation = -16.227796 kcal Electronic energy + Delta-G solvation = -27705.222634 eV Core-core repulsion = 23989.780267 eV Total energy + Delta-G solvation = -3715.442367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.27843 -39.39200 -37.78509 -34.77056 -34.60934 -32.84033 -31.57924 -31.28501 -31.00535 -29.14789 -27.47492 -26.29492 -25.26534 -23.55343 -22.99400 -22.83840 -21.19060 -20.77965 -19.78497 -19.12746 -17.26300 -16.74779 -16.47253 -16.12460 -15.74763 -15.32674 -15.02525 -14.72925 -14.27870 -14.08550 -13.95118 -13.81482 -13.54678 -13.41882 -13.31369 -13.08136 -12.85723 -12.77253 -12.59766 -12.21475 -12.13596 -11.93787 -11.83915 -11.69020 -11.43375 -11.38682 -11.08180 -11.00578 -10.95626 -10.85997 -10.59460 -10.47852 -10.28624 -9.94565 -9.73633 -9.63636 -8.96656 -8.85924 -8.60092 -8.51172 -6.89673 -5.73502 -3.02339 1.21516 1.35975 2.76373 3.05907 3.45962 3.51269 3.53711 3.69721 4.47261 4.52818 4.56839 4.61545 4.64138 4.68548 4.81451 4.88188 4.91360 5.04990 5.09846 5.15245 5.26240 5.28489 5.35828 5.38744 5.40944 5.48533 5.50087 5.52865 5.61503 5.62805 5.70914 5.73329 5.79267 5.86319 5.97655 5.99669 6.01496 6.09633 6.17483 6.21340 6.29787 6.33913 6.46219 6.50365 6.50800 6.52140 6.74005 6.88818 6.92911 7.68736 7.73210 8.31591 8.45085 9.56376 10.13378 10.47896 11.49399 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.002468 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.969297 B =11340.651426 C =12997.746932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.068 4.068 7 C -0.096 4.096 8 C 0.528 3.472 9 O -0.527 6.527 10 N -0.622 5.622 11 C 0.112 3.888 12 C -0.102 4.102 13 H 0.086 0.914 14 C 0.163 3.837 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.100 4.100 25 H 0.083 0.917 26 C -0.139 4.139 27 C 0.103 3.897 28 C -0.101 4.101 29 C -0.117 4.117 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.120 0.880 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.859 -1.831 4.718 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.068 4.068 7 C -0.136 4.136 8 C 0.316 3.684 9 O -0.403 6.403 10 N -0.357 5.357 11 C -0.010 4.010 12 C -0.122 4.122 13 H 0.104 0.896 14 C 0.035 3.965 15 N -0.377 5.377 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.120 4.120 25 H 0.102 0.898 26 C -0.197 4.197 27 C -0.020 4.020 28 C -0.119 4.119 29 C -0.135 4.135 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.138 0.862 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.501 -2.527 4.557 27.008 hybrid contribution 1.006 -0.115 -0.395 1.087 sum -25.495 -2.643 4.162 25.967 Atomic orbital electron populations 1.21743 0.94822 1.01567 1.02149 1.20541 0.96036 0.92829 1.02884 1.19867 0.99298 0.96075 0.93264 1.20934 1.00431 0.94734 0.97446 1.20933 0.98827 0.94930 0.97299 1.19263 0.99175 0.94766 0.93641 1.20641 0.92577 0.95513 1.04899 1.20109 0.89194 0.82349 0.76710 1.90768 1.70020 1.30408 1.49075 1.48869 1.08225 1.05272 1.73292 1.22153 0.79281 0.98563 1.01039 1.22381 0.95192 0.95232 0.99375 0.89586 1.20692 0.86594 0.96482 0.92709 1.42371 1.09337 1.78501 1.07449 1.19252 0.92707 1.36137 0.88902 0.91186 1.24747 0.97835 1.02176 0.96254 1.69670 1.21072 1.51483 1.15861 0.86119 0.81540 0.77531 0.81024 1.20586 1.21888 1.21853 1.22230 0.94883 0.95079 0.99837 0.89824 1.21728 1.01756 0.94290 1.01930 1.22579 0.97473 0.82114 0.99853 1.20965 0.98611 0.94925 0.97387 1.20952 1.00319 0.94698 0.97488 0.92509 0.92615 0.92583 0.91054 0.91089 0.86268 0.86324 0.88245 0.88168 0.91943 0.89203 0.96345 0.96062 0.78254 0.93563 0.91766 0.92701 0.92422 0.90501 0.90895 0.86219 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.61 16 2 C -0.09 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.09 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 5 C -0.10 -1.17 9.70 -39.59 -0.38 -1.55 16 6 C -0.07 -0.81 4.37 -104.63 -0.46 -1.27 16 7 C -0.10 -1.02 4.77 -29.04 -0.14 -1.15 16 8 C 0.53 8.03 7.88 -10.98 -0.09 7.95 16 9 O -0.53 -10.63 16.37 5.56 0.09 -10.54 16 10 N -0.62 -8.84 3.29 -169.96 -0.56 -9.40 16 11 C 0.11 1.90 6.31 -2.98 -0.02 1.88 16 12 C -0.10 -1.59 2.64 -89.25 -0.24 -1.83 16 13 H 0.09 1.34 7.85 -51.93 -0.41 0.93 16 14 C 0.16 3.27 5.35 -4.04 -0.02 3.24 16 15 N -0.73 -18.75 5.33 -59.91 -0.32 -19.06 16 16 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 20 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 24 C -0.10 -1.15 3.19 -88.91 -0.28 -1.43 16 25 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 26 C -0.14 -1.31 9.17 37.16 0.34 -0.96 16 27 C 0.10 1.04 6.39 -2.30 -0.01 1.03 16 28 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 29 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.10 0.84 7.84 -51.93 -0.41 0.43 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.91 7.49 -51.93 -0.39 1.52 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.38 10.31 7.51 -40.82 -0.31 10.00 16 44 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 48 H 0.08 0.58 7.23 -51.93 -0.38 0.20 16 49 H 0.07 0.65 8.02 -51.93 -0.42 0.23 16 50 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 51 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 414.07 15.07 6.24 6.24 Total: -1.00 -34.94 414.07 -10.90 -45.84 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -9.01 Total: 6.43 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -3.04 Total: -9.37 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.15 Total: -56.52 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.94 -10.90 -45.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106712818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.613 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds