Wall clock time and date at job start Tue Mar 31 2020 16:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46934 * 2 1 4 4 C 1.38235 * 120.00247 * 89.99874 * 3 2 1 5 5 C 1.38238 * 119.99788 * 180.02562 * 4 3 2 6 6 C 1.38227 * 120.00079 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00029 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47266 * 89.99839 * 7 6 5 9 9 O 1.21279 * 120.00113 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99961 * 180.02562 * 8 7 6 11 11 C 1.47481 * 127.03335 * 179.97438 * 10 8 7 12 12 C 1.53998 * 107.08415 * 154.51448 * 11 10 8 13 13 H 1.09004 * 110.32555 * 120.19872 * 12 11 10 14 14 C 1.52997 * 110.33466 * 242.31488 * 12 11 10 15 15 N 1.46506 * 109.46680 * 293.55253 * 14 12 11 16 16 C 1.36943 * 119.99409 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00543 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99638 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99973 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00192 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46791 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47372 * 119.99350 * 20 18 16 23 23 H 1.48499 * 109.46895 * 239.99775 * 20 18 16 24 24 C 1.54620 * 105.04438 * 1.31124 * 12 11 10 25 25 H 1.08994 * 110.73756 * 263.51032 * 24 12 11 26 26 C 1.53003 * 110.73920 * 140.36077 * 24 12 11 27 27 C 1.48118 * 127.03299 * 359.68624 * 10 8 7 28 28 C 1.38238 * 120.00336 * 0.25244 * 6 5 4 29 29 C 1.38231 * 119.99652 * 359.49786 * 28 6 5 30 30 H 1.09004 * 109.47036 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47315 * 299.99598 * 1 2 3 32 32 H 1.08993 * 109.47674 * 60.00199 * 1 2 3 33 33 H 1.09000 * 109.46987 * 239.99986 * 2 1 3 34 34 H 1.09004 * 109.47191 * 119.99931 * 2 1 3 35 35 H 1.08001 * 119.99898 * 0.02562 * 4 3 2 36 36 H 1.07995 * 119.99336 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47205 * 329.99932 * 7 6 5 38 38 H 1.08997 * 109.47395 * 210.00425 * 7 6 5 39 39 H 1.08997 * 109.91691 * 273.88587 * 11 10 8 40 40 H 1.09007 * 109.91002 * 34.96364 * 11 10 8 41 41 H 1.09003 * 109.46672 * 53.53938 * 14 12 11 42 42 H 1.08992 * 109.47578 * 173.54898 * 14 12 11 43 43 H 0.96991 * 120.00160 * 359.97438 * 15 14 12 44 44 H 0.97001 * 119.99812 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.46782 * 60.00408 * 26 24 12 46 46 H 1.09004 * 109.46901 * 179.97438 * 26 24 12 47 47 H 1.08991 * 109.47374 * 300.00058 * 26 24 12 48 48 H 1.09000 * 110.66016 * 337.77172 * 27 10 8 49 49 H 1.09001 * 110.66208 * 100.88448 * 27 10 8 50 50 H 1.07998 * 119.99845 * 179.72455 * 28 6 5 51 51 H 1.08004 * 120.00339 * 180.23091 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3760 1.1970 6 6 2.9523 4.0279 -0.0001 7 6 3.4534 5.4491 -0.0002 8 6 4.9604 5.4504 -0.0008 9 8 5.5677 4.4006 -0.0016 10 7 5.6334 6.6182 -0.0005 11 6 7.0970 6.8000 -0.0005 12 6 7.3821 8.1746 -0.6335 13 1 7.9099 8.8149 0.0735 14 6 8.2020 8.0102 -1.9147 15 7 9.5333 7.4984 -1.5801 16 6 10.4484 7.2700 -2.5730 17 1 10.1886 7.4667 -3.6026 18 6 11.7100 6.7855 -2.2560 19 7 12.0269 6.5462 -1.0010 20 14 12.9581 6.4732 -3.6103 21 1 12.3593 6.8190 -4.9245 22 1 14.1611 7.3122 -3.3779 23 1 13.3458 5.0397 -3.6051 24 6 5.9897 8.7645 -0.9562 25 1 5.7231 8.5777 -1.9964 26 6 5.9519 10.2631 -0.6499 27 6 5.0543 7.9815 -0.0060 28 6 2.7164 3.3782 -1.1973 29 6 2.2611 2.0730 -1.1972 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0831 1.5633 2.1324 36 1 2.9025 3.8853 2.1323 37 1 3.0901 5.9626 0.8900 38 1 3.0893 5.9628 -0.8899 39 1 7.4740 6.7766 1.0219 40 1 7.5689 6.0124 -0.5880 41 1 7.6995 7.3080 -2.5799 42 1 8.2981 8.9758 -2.4111 43 1 9.7665 7.3213 -0.6554 44 1 12.9086 6.2080 -0.7795 45 1 6.7001 10.7763 -1.2540 46 1 4.9631 10.6570 -0.8849 47 1 6.1656 10.4235 0.4067 48 1 4.0367 7.9655 -0.3963 49 1 5.0768 8.4130 0.9947 50 1 2.8914 3.8891 -2.1325 51 1 2.0804 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106712818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:49 Heat of formation + Delta-G solvation = -36.446003 kcal Electronic energy + Delta-G solvation = -27706.099362 eV Core-core repulsion = 23989.780267 eV Total energy + Delta-G solvation = -3716.319094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.35948 -40.29739 -38.99284 -36.46015 -35.53070 -34.19411 -33.07682 -32.29161 -31.81464 -30.63360 -28.49431 -27.16949 -26.79265 -25.09946 -24.01891 -23.65411 -22.51756 -21.59538 -20.97026 -20.24632 -19.20043 -18.01682 -17.44026 -17.07327 -16.75356 -16.58971 -16.28403 -15.94937 -15.59541 -15.35865 -15.19739 -14.95380 -14.62493 -14.57077 -14.27380 -14.08423 -13.97779 -13.78000 -13.67385 -13.24409 -13.13569 -12.96887 -12.93587 -12.86939 -12.79037 -12.52231 -12.50106 -12.12209 -12.07201 -11.97406 -11.86286 -11.70251 -11.66230 -11.48068 -11.36595 -11.00847 -10.94241 -9.80045 -9.71576 -9.42317 -9.03806 -7.98742 -5.27818 0.38146 0.52529 1.43164 1.45221 1.54887 1.62375 1.98368 2.52543 2.85326 3.34477 3.47954 3.57383 3.68657 3.77215 3.87903 3.92321 4.01300 4.13881 4.17881 4.20732 4.25826 4.45375 4.46864 4.48381 4.54229 4.56281 4.58839 4.61555 4.68398 4.73305 4.75454 4.79646 4.90826 4.94636 5.02736 5.04548 5.08090 5.11815 5.18058 5.22493 5.23074 5.28162 5.37911 5.39807 5.45249 5.51342 5.58891 5.67068 5.73082 6.13347 6.23654 6.59179 7.16556 7.29589 8.05282 8.28059 9.25048 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.002468 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.969297 B =11340.651426 C =12997.746932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.116 4.116 6 C -0.087 4.087 7 C -0.083 4.083 8 C 0.521 3.479 9 O -0.590 6.590 10 N -0.621 5.621 11 C 0.116 3.884 12 C -0.093 4.093 13 H 0.088 0.912 14 C 0.163 3.837 15 N -0.745 5.745 16 C -0.246 4.246 17 H 0.075 0.925 18 C -0.078 4.078 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.296 1.296 24 C -0.092 4.092 25 H 0.082 0.918 26 C -0.134 4.134 27 C 0.104 3.896 28 C -0.119 4.119 29 C -0.131 4.131 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.056 0.944 40 H 0.036 0.964 41 H 0.006 0.994 42 H 0.031 0.969 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.051 0.949 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.117 0.883 49 H 0.096 0.904 50 H 0.125 0.875 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.489 -0.414 4.501 29.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.134 4.134 6 C -0.087 4.087 7 C -0.122 4.122 8 C 0.312 3.688 9 O -0.471 6.471 10 N -0.354 5.354 11 C -0.008 4.008 12 C -0.112 4.112 13 H 0.106 0.894 14 C 0.037 3.963 15 N -0.388 5.388 16 C -0.378 4.378 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.190 1.190 22 H -0.215 1.215 23 H -0.223 1.223 24 C -0.111 4.111 25 H 0.100 0.900 26 C -0.192 4.192 27 C -0.017 4.017 28 C -0.137 4.137 29 C -0.149 4.149 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.024 0.976 42 H 0.049 0.951 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.135 0.865 49 H 0.114 0.886 50 H 0.143 0.857 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -29.192 -1.048 4.315 29.528 hybrid contribution 1.789 -0.583 -0.337 1.912 sum -27.402 -1.630 3.978 27.738 Atomic orbital electron populations 1.21710 0.93647 1.02438 1.02047 1.20592 0.96999 0.91399 1.03290 1.20201 0.98741 0.97187 0.93083 1.21238 1.00272 0.94827 0.98360 1.21217 0.98880 0.95469 0.97802 1.19510 0.99626 0.95792 0.93819 1.20677 0.88341 0.95475 1.07729 1.21066 0.91106 0.81495 0.75156 1.90737 1.71623 1.32734 1.51956 1.48987 1.06903 1.07078 1.72447 1.21864 0.81482 0.97676 0.99743 1.22265 0.97288 0.94725 0.96931 0.89357 1.20830 0.84668 0.95794 0.95007 1.42596 1.11035 1.78688 1.06462 1.19664 0.93370 1.35012 0.89711 0.90753 1.25614 0.99998 1.02837 0.98561 1.69829 1.21338 1.52964 1.17882 0.85056 0.78923 0.76826 0.78867 1.18958 1.21537 1.22302 1.22234 0.91842 0.96746 1.00305 0.89965 1.21704 1.03142 0.92070 1.02244 1.22904 0.98723 0.79075 1.01003 1.21213 0.99055 0.95546 0.97853 1.21226 1.00426 0.94790 0.98427 0.91146 0.92619 0.92777 0.90782 0.90563 0.84618 0.85162 0.84953 0.85384 0.92545 0.94513 0.97644 0.95136 0.79483 0.93989 0.93001 0.89775 0.91633 0.86482 0.88636 0.85657 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.09 -1.29 6.06 29.85 0.18 -1.11 16 3 C -0.09 -1.88 5.13 -19.86 -0.10 -1.98 16 4 C -0.13 -2.68 9.70 22.27 0.22 -2.47 16 5 C -0.12 -2.56 9.70 22.27 0.22 -2.35 16 6 C -0.09 -2.00 4.37 -19.87 -0.09 -2.09 16 7 C -0.08 -1.55 4.77 29.10 0.14 -1.41 16 8 C 0.52 15.61 7.88 87.66 0.69 16.30 16 9 O -0.59 -24.85 16.37 -3.03 -0.05 -24.90 16 10 N -0.62 -17.04 3.29 -810.03 -2.67 -19.71 16 11 C 0.12 4.09 6.31 86.53 0.55 4.63 16 12 C -0.09 -2.87 2.64 -9.91 -0.03 -2.89 16 13 H 0.09 2.71 7.85 -2.39 -0.02 2.69 16 14 C 0.16 6.67 5.35 86.38 0.46 7.13 16 15 N -0.75 -39.46 5.33 -343.45 -1.83 -41.29 16 16 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 17 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 19 N -0.97 -61.66 13.06 21.65 0.28 -61.38 16 20 Si 0.97 47.94 29.55 68.60 2.03 49.96 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 24 C -0.09 -1.85 3.19 -9.69 -0.03 -1.88 16 25 H 0.08 1.72 7.87 -2.39 -0.02 1.71 16 26 C -0.13 -2.02 9.17 71.98 0.66 -1.36 16 27 C 0.10 1.71 6.39 86.62 0.55 2.26 16 28 C -0.12 -2.76 9.70 22.27 0.22 -2.54 16 29 C -0.13 -2.84 9.70 22.27 0.22 -2.62 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 34 H 0.08 1.06 8.09 -2.38 -0.02 1.04 16 35 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.13 1.59 8.09 -2.38 -0.02 1.57 16 38 H 0.13 1.67 7.84 -2.39 -0.02 1.65 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.04 1.68 7.49 -2.38 -0.02 1.66 16 41 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.37 21.02 7.51 -92.71 -0.70 20.32 16 44 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 48 H 0.12 1.08 7.23 -2.39 -0.02 1.07 16 49 H 0.10 1.24 8.02 -2.39 -0.02 1.22 16 50 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 51 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -80.63 414.07 3.82 -76.80 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.19 Total: 31.55 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 5.87 Total: -11.04 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -4.22 Total: -122.38 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.96 kcal Total: -80.63 3.82 -76.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106712818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.359 kcal (2) G-P(sol) polarization free energy of solvation -80.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds