Wall clock time and date at job start Tue Mar 31 2020 15:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34490 * 125.56811 * 2 1 4 4 C 1.46687 * 106.33073 * 180.08653 * 3 2 1 5 5 C 1.47266 * 126.93952 * 179.88504 * 4 3 2 6 6 O 1.21624 * 120.00379 * 229.33584 * 5 4 3 7 7 N 1.34775 * 119.99715 * 49.34509 * 5 4 3 8 8 C 1.46927 * 120.63407 * 355.36855 * 7 5 4 9 9 C 1.53623 * 108.54609 * 126.37135 * 8 7 5 10 10 C 1.53045 * 109.24181 * 54.85503 * 9 8 7 11 11 C 1.50695 * 109.44932 * 178.49980 * 10 9 8 12 12 H 1.08000 * 120.00296 * 120.06293 * 11 10 9 13 13 C 1.37880 * 120.00150 * 300.06538 * 11 10 9 14 14 N 1.31506 * 120.00143 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99783 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47006 * 90.00220 * 15 13 11 17 17 H 1.48500 * 109.47073 * 210.00242 * 15 13 11 18 18 H 1.48495 * 109.47073 * 330.00165 * 15 13 11 19 19 C 1.53044 * 109.53836 * 298.51229 * 10 9 8 20 20 C 1.46931 * 120.62875 * 175.64956 * 7 5 4 21 21 C 1.36768 * 106.11410 * 359.62958 * 4 3 2 22 22 C 1.50702 * 125.79743 * 180.24356 * 21 4 3 23 23 N 1.34655 * 108.39852 * 0.22446 * 21 4 3 24 24 C 1.46494 * 124.84979 * 180.02562 * 23 21 4 25 25 C 1.53005 * 109.47369 * 89.99549 * 24 23 21 26 26 C 1.52998 * 117.50151 * 243.62324 * 25 24 23 27 27 C 1.53001 * 117.49711 * 174.99656 * 25 24 23 28 28 H 1.08999 * 109.47210 * 270.32896 * 1 2 3 29 29 H 1.08994 * 109.47413 * 30.33695 * 1 2 3 30 30 H 1.09008 * 109.46935 * 150.33665 * 1 2 3 31 31 H 1.08007 * 126.83384 * 359.97086 * 3 2 1 32 32 H 1.09004 * 109.58889 * 246.20521 * 8 7 5 33 33 H 1.09002 * 109.58587 * 6.63017 * 8 7 5 34 34 H 1.09002 * 109.63107 * 294.86704 * 9 8 7 35 35 H 1.08989 * 109.43559 * 174.72895 * 9 8 7 36 36 H 1.08995 * 109.45936 * 58.53371 * 10 9 8 37 37 H 0.97004 * 120.00269 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.49936 * 301.41617 * 19 10 9 39 39 H 1.09000 * 109.52082 * 181.33016 * 19 10 9 40 40 H 1.08997 * 109.58798 * 353.37312 * 20 7 5 41 41 H 1.09002 * 109.58579 * 113.65516 * 20 7 5 42 42 H 1.08997 * 109.46898 * 89.97553 * 22 21 4 43 43 H 1.08995 * 109.46925 * 209.97310 * 22 21 4 44 44 H 1.08998 * 109.47348 * 329.97401 * 22 21 4 45 45 H 1.09005 * 109.47416 * 209.99791 * 24 23 21 46 46 H 1.09007 * 109.47239 * 329.99611 * 24 23 21 47 47 H 1.09002 * 115.54302 * 29.33160 * 25 24 23 48 48 H 1.08999 * 117.49908 * 359.97438 * 26 25 24 49 49 H 1.09002 * 117.49997 * 145.02128 * 26 25 24 50 50 H 1.09004 * 117.49845 * 214.97882 * 27 25 24 51 51 H 1.08991 * 117.50051 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6107 -0.0021 5 6 4.8977 1.4304 -0.0053 6 8 5.7834 1.1979 -0.8056 7 7 5.0358 2.4381 0.8790 8 6 3.9352 2.7962 1.7840 9 6 4.4650 2.7852 3.2259 10 6 5.6830 3.7069 3.3227 11 6 6.1843 3.7283 4.7437 12 1 7.1911 3.4067 4.9661 13 6 5.3578 4.1584 5.7600 14 7 5.7951 4.1766 7.0001 15 14 3.6166 4.7152 5.3754 16 1 2.6962 3.5525 5.4546 17 1 3.1979 5.7460 6.3589 18 1 3.5717 5.2898 4.0068 19 6 6.7894 3.1916 2.3994 20 6 6.2879 3.2035 0.9520 21 6 3.5997 -0.7550 0.0053 22 6 4.7722 -1.7017 0.0115 23 7 2.3008 -1.1097 0.0065 24 6 1.8100 -2.4900 0.0142 25 6 1.6382 -2.9622 1.4595 26 6 2.5142 -4.1242 1.9319 27 6 1.0206 -4.3441 1.6824 28 1 -0.3633 0.0059 1.0276 29 1 -0.3634 0.8869 -0.5190 30 1 -0.3633 -0.8931 -0.5086 31 1 1.9627 2.1235 -0.0004 32 1 3.5662 3.7912 1.5349 33 1 3.1288 2.0696 1.6840 34 1 4.7533 1.7710 3.5024 35 1 3.6862 3.1393 3.9012 36 1 5.3998 4.7156 3.0223 37 1 5.2137 4.4796 7.7150 38 1 7.0558 2.1736 2.6837 39 1 7.6652 3.8347 2.4863 40 1 7.0343 2.7459 0.3028 41 1 6.1074 4.2304 0.6340 42 1 5.0542 -1.9240 1.0406 43 1 4.4961 -2.6253 -0.4971 44 1 5.6144 -1.2406 -0.5045 45 1 0.8500 -2.5372 -0.4999 46 1 2.5272 -3.1335 -0.4954 47 1 1.4022 -2.1825 2.1837 48 1 3.2125 -4.5527 1.2130 49 1 2.8547 -4.1093 2.9672 50 1 0.3787 -4.4738 2.5538 51 1 0.7371 -4.9170 0.7997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116530664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:37 Heat of formation + Delta-G solvation = 33.021474 kcal Electronic energy + Delta-G solvation = -29420.556413 eV Core-core repulsion = 25707.249654 eV Total energy + Delta-G solvation = -3713.306758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59256 -39.32464 -37.73202 -36.80043 -33.48169 -32.77482 -32.60771 -31.33147 -30.41706 -29.23783 -27.28054 -26.27773 -24.76084 -23.01709 -22.80297 -22.50851 -21.51683 -21.17100 -19.92284 -19.04618 -17.80334 -16.94913 -16.68849 -16.23335 -15.92332 -15.45973 -14.97356 -14.74529 -14.44406 -14.23854 -14.06948 -13.60781 -13.35047 -13.31405 -13.16333 -12.91462 -12.80785 -12.61339 -12.48436 -12.45849 -12.29601 -12.18876 -11.94085 -11.90334 -11.80208 -11.60183 -11.38032 -10.95931 -10.84340 -10.62954 -10.47333 -10.12367 -10.06280 -9.68627 -9.45452 -9.21707 -9.03505 -8.55153 -8.43170 -8.03970 -7.87610 -6.05941 -4.04503 2.01762 2.45259 2.64417 3.25214 3.30741 3.36346 3.37615 3.41230 3.71507 4.19148 4.36089 4.41119 4.46790 4.63335 4.71483 4.81298 4.84299 5.04523 5.07633 5.18683 5.20265 5.22988 5.24823 5.39114 5.48689 5.57170 5.59134 5.63404 5.66238 5.69696 5.74351 5.77983 5.81931 5.93491 5.96097 5.98543 6.03243 6.13427 6.24068 6.33267 6.42119 6.73198 6.77029 6.84932 6.87974 7.04591 7.15158 7.25836 7.28346 7.56312 7.77970 7.95743 8.54519 8.67281 8.98691 9.56672 11.07528 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.003773 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.877221 B = 7419.072916 C = 8211.541292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.011 3.989 3 C -0.165 4.165 4 C -0.216 4.216 5 C 0.593 3.407 6 O -0.560 6.560 7 N -0.594 5.594 8 C 0.097 3.903 9 C -0.132 4.132 10 C 0.014 3.986 11 C -0.511 4.511 12 H 0.073 0.927 13 C 0.068 3.932 14 N -0.903 5.903 15 Si 0.886 3.114 16 H -0.279 1.279 17 H -0.298 1.298 18 H -0.264 1.264 19 C -0.112 4.112 20 C 0.110 3.890 21 C 0.091 3.909 22 C -0.092 4.092 23 N -0.436 5.436 24 C 0.133 3.867 25 C -0.175 4.175 26 C -0.173 4.173 27 C -0.171 4.171 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.144 0.856 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.027 0.973 37 H 0.263 0.737 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.112 0.888 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.098 0.902 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 -14.984 -14.677 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.189 4.189 4 C -0.226 4.226 5 C 0.382 3.618 6 O -0.441 6.441 7 N -0.326 5.326 8 C -0.026 4.026 9 C -0.170 4.170 10 C -0.005 4.005 11 C -0.549 4.549 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.541 5.541 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.226 1.226 18 H -0.189 1.189 19 C -0.150 4.150 20 C -0.012 4.012 21 C -0.023 4.023 22 C -0.149 4.149 23 N -0.113 5.113 24 C 0.011 3.989 25 C -0.194 4.194 26 C -0.210 4.210 27 C -0.208 4.208 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.131 0.869 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.116 0.884 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.376 -15.358 -14.907 24.724 hybrid contribution -1.129 0.393 0.262 1.224 sum -13.505 -14.965 -14.645 24.916 Atomic orbital electron populations 1.20299 0.88062 1.02875 1.02614 1.20117 0.93340 0.85474 1.10757 1.21723 0.90520 0.97531 1.09137 1.20042 0.93256 0.92162 1.17133 1.17431 0.85336 0.79200 0.79850 1.90700 1.43278 1.70636 1.39458 1.47970 1.15753 1.33032 1.35828 1.22181 0.89287 1.00323 0.90765 1.22405 0.99710 1.02040 0.92815 1.19136 0.91278 0.94100 0.95973 1.21072 1.01025 1.43507 0.89283 0.90895 1.25034 0.98294 0.95053 0.94933 1.69902 1.36727 1.47866 0.99612 0.86867 0.85387 0.78019 0.78103 1.20622 1.22581 1.18908 1.21814 0.99324 1.01513 0.92351 1.21740 0.85575 0.94977 0.98919 1.20009 0.84602 0.93563 1.04156 1.20475 0.94697 0.96686 1.03091 1.43383 1.04929 1.05617 1.57344 1.21390 1.01074 0.80779 0.95673 1.22675 1.06544 0.92819 0.97362 1.23085 0.93507 1.01425 1.03023 1.22962 0.96435 0.97847 1.03599 0.91069 0.90243 0.92037 0.83837 0.92304 0.89334 0.91860 0.92751 0.95476 0.92746 0.92398 0.91453 0.89953 0.92207 0.90636 0.91927 0.88862 0.88874 0.89158 0.86947 0.88507 0.88327 0.88352 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.06 36.00 0.36 -0.29 16 2 C 0.01 0.13 6.85 -81.87 -0.56 -0.44 16 3 C -0.16 -2.29 8.62 -37.50 -0.32 -2.61 16 4 C -0.22 -3.49 5.25 -103.35 -0.54 -4.04 16 5 C 0.59 11.06 7.34 -12.59 -0.09 10.96 16 6 O -0.56 -11.66 15.53 5.26 0.08 -11.58 16 7 N -0.59 -10.99 2.97 -173.82 -0.52 -11.50 16 8 C 0.10 1.75 6.00 -3.49 -0.02 1.73 16 9 C -0.13 -2.82 4.86 -26.38 -0.13 -2.94 16 10 C 0.01 0.33 1.65 -91.73 -0.15 0.17 16 11 C -0.51 -14.26 9.14 -34.44 -0.31 -14.57 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 14 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 15 Si 0.89 21.63 24.38 -169.99 -4.14 17.49 16 16 H -0.28 -6.60 6.86 56.52 0.39 -6.21 16 17 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 18 H -0.26 -6.10 6.53 56.52 0.37 -5.73 16 19 C -0.11 -2.28 5.30 -26.61 -0.14 -2.42 16 20 C 0.11 2.01 6.42 -3.71 -0.02 1.98 16 21 C 0.09 1.27 6.89 -81.88 -0.56 0.71 16 22 C -0.09 -1.11 9.87 36.01 0.36 -0.75 16 23 N -0.44 -4.95 2.68 -107.96 -0.29 -5.24 16 24 C 0.13 1.04 5.86 -4.04 -0.02 1.01 16 25 C -0.18 -1.37 6.01 -90.62 -0.54 -1.91 16 26 C -0.17 -1.24 10.18 -26.73 -0.27 -1.51 16 27 C -0.17 -1.02 10.25 -26.73 -0.27 -1.30 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.40 6.94 -51.92 -0.36 0.03 16 31 H 0.14 1.83 7.72 -52.48 -0.41 1.43 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.47 4.50 -51.93 -0.23 1.24 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.05 1.22 3.24 -51.94 -0.17 1.05 16 36 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.49 7.03 -51.93 -0.37 1.13 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.57 6.92 -51.93 -0.36 0.21 16 44 H 0.09 1.30 7.05 -51.93 -0.37 0.93 16 45 H 0.09 0.57 6.90 -51.93 -0.36 0.21 16 46 H 0.09 0.62 6.61 -51.92 -0.34 0.27 16 47 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 49 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -33.31 392.15 -9.97 -43.28 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.42 Total: 2.83 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -3.36 Total: -14.36 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.03 Total: -43.57 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.31 -9.97 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116530664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.302 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds