Wall clock time and date at job start Tue Mar 31 2020 15:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34490 * 125.56811 * 2 1 4 4 C 1.46687 * 106.33073 * 180.08653 * 3 2 1 5 5 C 1.47266 * 126.93952 * 179.88504 * 4 3 2 6 6 O 1.21624 * 120.00379 * 229.33584 * 5 4 3 7 7 N 1.34775 * 119.99715 * 49.34509 * 5 4 3 8 8 C 1.46927 * 120.63407 * 355.36855 * 7 5 4 9 9 C 1.53623 * 108.54609 * 126.37135 * 8 7 5 10 10 C 1.53045 * 109.24181 * 54.85503 * 9 8 7 11 11 C 1.50695 * 109.44932 * 178.49980 * 10 9 8 12 12 H 1.08000 * 120.00296 * 120.06293 * 11 10 9 13 13 C 1.37880 * 120.00150 * 300.06538 * 11 10 9 14 14 N 1.31506 * 120.00143 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99783 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47006 * 90.00220 * 15 13 11 17 17 H 1.48500 * 109.47073 * 210.00242 * 15 13 11 18 18 H 1.48495 * 109.47073 * 330.00165 * 15 13 11 19 19 C 1.53044 * 109.53836 * 298.51229 * 10 9 8 20 20 C 1.46931 * 120.62875 * 175.64956 * 7 5 4 21 21 C 1.36768 * 106.11410 * 359.62958 * 4 3 2 22 22 C 1.50702 * 125.79743 * 180.24356 * 21 4 3 23 23 N 1.34655 * 108.39852 * 0.22446 * 21 4 3 24 24 C 1.46494 * 124.84979 * 180.02562 * 23 21 4 25 25 C 1.53005 * 109.47369 * 89.99549 * 24 23 21 26 26 C 1.52998 * 117.50151 * 243.62324 * 25 24 23 27 27 C 1.53001 * 117.49711 * 174.99656 * 25 24 23 28 28 H 1.08999 * 109.47210 * 270.32896 * 1 2 3 29 29 H 1.08994 * 109.47413 * 30.33695 * 1 2 3 30 30 H 1.09008 * 109.46935 * 150.33665 * 1 2 3 31 31 H 1.08007 * 126.83384 * 359.97086 * 3 2 1 32 32 H 1.09004 * 109.58889 * 246.20521 * 8 7 5 33 33 H 1.09002 * 109.58587 * 6.63017 * 8 7 5 34 34 H 1.09002 * 109.63107 * 294.86704 * 9 8 7 35 35 H 1.08989 * 109.43559 * 174.72895 * 9 8 7 36 36 H 1.08995 * 109.45936 * 58.53371 * 10 9 8 37 37 H 0.97004 * 120.00269 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.49936 * 301.41617 * 19 10 9 39 39 H 1.09000 * 109.52082 * 181.33016 * 19 10 9 40 40 H 1.08997 * 109.58798 * 353.37312 * 20 7 5 41 41 H 1.09002 * 109.58579 * 113.65516 * 20 7 5 42 42 H 1.08997 * 109.46898 * 89.97553 * 22 21 4 43 43 H 1.08995 * 109.46925 * 209.97310 * 22 21 4 44 44 H 1.08998 * 109.47348 * 329.97401 * 22 21 4 45 45 H 1.09005 * 109.47416 * 209.99791 * 24 23 21 46 46 H 1.09007 * 109.47239 * 329.99611 * 24 23 21 47 47 H 1.09002 * 115.54302 * 29.33160 * 25 24 23 48 48 H 1.08999 * 117.49908 * 359.97438 * 26 25 24 49 49 H 1.09002 * 117.49997 * 145.02128 * 26 25 24 50 50 H 1.09004 * 117.49845 * 214.97882 * 27 25 24 51 51 H 1.08991 * 117.50051 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6107 -0.0021 5 6 4.8977 1.4304 -0.0053 6 8 5.7834 1.1979 -0.8056 7 7 5.0358 2.4381 0.8790 8 6 3.9352 2.7962 1.7840 9 6 4.4650 2.7852 3.2259 10 6 5.6830 3.7069 3.3227 11 6 6.1843 3.7283 4.7437 12 1 7.1911 3.4067 4.9661 13 6 5.3578 4.1584 5.7600 14 7 5.7951 4.1766 7.0001 15 14 3.6166 4.7152 5.3754 16 1 2.6962 3.5525 5.4546 17 1 3.1979 5.7460 6.3589 18 1 3.5717 5.2898 4.0068 19 6 6.7894 3.1916 2.3994 20 6 6.2879 3.2035 0.9520 21 6 3.5997 -0.7550 0.0053 22 6 4.7722 -1.7017 0.0115 23 7 2.3008 -1.1097 0.0065 24 6 1.8100 -2.4900 0.0142 25 6 1.6382 -2.9622 1.4595 26 6 2.5142 -4.1242 1.9319 27 6 1.0206 -4.3441 1.6824 28 1 -0.3633 0.0059 1.0276 29 1 -0.3634 0.8869 -0.5190 30 1 -0.3633 -0.8931 -0.5086 31 1 1.9627 2.1235 -0.0004 32 1 3.5662 3.7912 1.5349 33 1 3.1288 2.0696 1.6840 34 1 4.7533 1.7710 3.5024 35 1 3.6862 3.1393 3.9012 36 1 5.3998 4.7156 3.0223 37 1 5.2137 4.4796 7.7150 38 1 7.0558 2.1736 2.6837 39 1 7.6652 3.8347 2.4863 40 1 7.0343 2.7459 0.3028 41 1 6.1074 4.2304 0.6340 42 1 5.0542 -1.9240 1.0406 43 1 4.4961 -2.6253 -0.4971 44 1 5.6144 -1.2406 -0.5045 45 1 0.8500 -2.5372 -0.4999 46 1 2.5272 -3.1335 -0.4954 47 1 1.4022 -2.1825 2.1837 48 1 3.2125 -4.5527 1.2130 49 1 2.8547 -4.1093 2.9672 50 1 0.3787 -4.4738 2.5538 51 1 0.7371 -4.9170 0.7997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116530664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:35 Heat of formation + Delta-G solvation = 14.796900 kcal Electronic energy + Delta-G solvation = -29421.346689 eV Core-core repulsion = 25707.249654 eV Total energy + Delta-G solvation = -3714.097035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.54449 -40.74730 -38.50197 -38.23475 -35.30485 -33.79425 -33.64745 -33.06920 -31.94651 -30.03947 -28.59827 -27.61930 -25.87746 -24.48543 -24.14407 -23.28853 -22.67516 -21.99142 -21.23321 -20.33003 -19.04587 -18.83631 -18.04447 -17.29542 -16.86596 -16.67227 -16.44552 -15.95433 -15.72088 -15.28574 -15.09505 -14.92416 -14.74323 -14.66204 -14.34209 -14.22530 -14.07107 -13.79394 -13.63018 -13.46417 -13.41228 -13.35401 -13.15683 -12.98470 -12.81133 -12.48219 -12.36816 -12.31798 -12.23257 -12.10805 -11.80487 -11.50209 -11.39369 -11.18607 -11.02788 -10.99782 -10.81392 -10.64830 -9.61490 -9.38780 -8.88824 -8.28324 -6.32702 0.93398 1.31425 1.37999 1.44768 1.48821 1.76263 2.07925 2.34367 2.37544 2.81590 3.06794 3.59271 3.72583 3.81241 3.84012 3.94534 4.03075 4.06367 4.11596 4.17475 4.23189 4.27764 4.32725 4.38686 4.43912 4.50633 4.52227 4.61875 4.65603 4.73045 4.74323 4.77112 4.84039 4.85615 4.93521 4.97668 4.98822 5.00677 5.06664 5.11714 5.14164 5.21205 5.22749 5.29192 5.39825 5.61928 5.67676 5.74446 5.86178 6.18294 6.31814 6.40708 6.53537 6.73727 7.25336 7.32595 8.88769 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.003773 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.877221 B = 7419.072916 C = 8211.541292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.023 3.977 3 C -0.189 4.189 4 C -0.256 4.256 5 C 0.591 3.409 6 O -0.591 6.591 7 N -0.599 5.599 8 C 0.107 3.893 9 C -0.127 4.127 10 C 0.015 3.985 11 C -0.520 4.520 12 H 0.028 0.972 13 C 0.009 3.991 14 N -0.953 5.953 15 Si 0.949 3.051 16 H -0.264 1.264 17 H -0.300 1.300 18 H -0.237 1.237 19 C -0.104 4.104 20 C 0.117 3.883 21 C 0.085 3.915 22 C -0.088 4.088 23 N -0.430 5.430 24 C 0.129 3.871 25 C -0.183 4.183 26 C -0.185 4.185 27 C -0.151 4.151 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.151 0.849 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.118 0.882 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.086 0.914 50 H 0.100 0.900 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.357 -16.126 -16.859 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 C -0.212 4.212 4 C -0.266 4.266 5 C 0.382 3.618 6 O -0.473 6.473 7 N -0.330 5.330 8 C -0.015 4.015 9 C -0.165 4.165 10 C -0.004 4.004 11 C -0.558 4.558 12 H 0.046 0.954 13 C -0.188 4.188 14 N -0.593 5.593 15 Si 0.775 3.225 16 H -0.190 1.190 17 H -0.228 1.228 18 H -0.160 1.160 19 C -0.143 4.143 20 C -0.005 4.005 21 C -0.031 4.031 22 C -0.146 4.146 23 N -0.105 5.105 24 C 0.008 3.992 25 C -0.202 4.202 26 C -0.222 4.222 27 C -0.188 4.188 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.169 0.831 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.136 0.864 46 H 0.121 0.879 47 H 0.109 0.891 48 H 0.125 0.875 49 H 0.105 0.895 50 H 0.119 0.881 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.070 -16.521 -17.106 28.702 hybrid contribution 0.121 0.647 0.995 1.193 sum -15.949 -15.874 -16.111 27.675 Atomic orbital electron populations 1.20429 0.85172 1.04528 1.03543 1.20674 0.94976 0.84863 1.08093 1.21871 0.89676 0.98735 1.10949 1.20056 0.93218 0.93112 1.20184 1.17867 0.85894 0.78878 0.79163 1.90668 1.44698 1.71281 1.40665 1.48042 1.15760 1.33251 1.35983 1.22142 0.89317 1.01988 0.88046 1.22253 0.98568 1.00332 0.95332 1.19090 0.92893 0.94994 0.93401 1.21373 0.99365 1.42871 0.92194 0.95376 1.25952 1.03245 0.95129 0.94442 1.70065 1.38745 1.49564 1.00973 0.85833 0.79526 0.78010 0.79108 1.18970 1.22803 1.16031 1.21692 0.98749 1.00299 0.93535 1.21638 0.85889 0.96131 0.96883 1.20202 0.86129 0.93217 1.03574 1.20439 0.93516 0.97530 1.03077 1.43634 1.03998 1.07132 1.55774 1.21704 1.02556 0.78895 0.96009 1.22538 1.07840 0.92990 0.96858 1.23154 0.94753 1.01601 1.02691 1.23045 0.95318 0.96095 1.04371 0.90347 0.89126 0.89923 0.83131 0.90457 0.87548 0.93553 0.93126 0.94936 0.92624 0.94157 0.91293 0.89977 0.90305 0.90756 0.88829 0.91214 0.86399 0.87852 0.89085 0.87527 0.89540 0.88143 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.06 71.24 0.72 -0.24 16 2 C 0.02 0.46 6.85 40.98 0.28 0.74 16 3 C -0.19 -4.85 8.62 23.62 0.20 -4.65 16 4 C -0.26 -8.05 5.25 -19.04 -0.10 -8.15 16 5 C 0.59 21.93 7.34 86.62 0.64 22.57 16 6 O -0.59 -24.88 15.53 -4.11 -0.06 -24.94 16 7 N -0.60 -21.67 2.97 -822.10 -2.44 -24.11 16 8 C 0.11 3.66 6.00 86.51 0.52 4.18 16 9 C -0.13 -5.30 4.86 30.82 0.15 -5.15 16 10 C 0.02 0.70 1.65 -11.51 -0.02 0.68 16 11 C -0.52 -30.03 9.14 25.60 0.23 -29.79 16 12 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 13 C 0.01 0.51 5.45 84.66 0.46 0.97 16 14 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 15 Si 0.95 44.07 24.38 68.60 1.67 45.74 16 16 H -0.26 -11.55 6.86 99.48 0.68 -10.86 16 17 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 18 H -0.24 -9.90 6.53 99.48 0.65 -9.25 16 19 C -0.10 -4.32 5.30 30.67 0.16 -4.16 16 20 C 0.12 4.20 6.42 86.36 0.55 4.76 16 21 C 0.09 2.26 6.89 41.78 0.29 2.55 16 22 C -0.09 -2.06 9.87 71.24 0.70 -1.35 16 23 N -0.43 -8.65 2.68 -495.48 -1.33 -9.98 16 24 C 0.13 1.56 5.86 86.38 0.51 2.06 16 25 C -0.18 -2.39 6.01 -10.79 -0.06 -2.45 16 26 C -0.19 -2.27 10.18 30.60 0.31 -1.96 16 27 C -0.15 -1.33 10.25 30.60 0.31 -1.02 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 0.66 6.94 -2.38 -0.02 0.64 16 31 H 0.15 3.50 7.72 -2.91 -0.02 3.47 16 32 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.11 3.31 4.50 -2.39 -0.01 3.30 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 2.16 3.24 -2.39 -0.01 2.15 16 36 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 37 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.08 2.98 7.03 -2.39 -0.02 2.96 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.09 1.51 6.92 -2.39 -0.02 1.50 16 44 H 0.07 1.97 7.05 -2.39 -0.02 1.95 16 45 H 0.12 0.88 6.90 -2.38 -0.02 0.86 16 46 H 0.10 1.01 6.61 -2.38 -0.02 0.99 16 47 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.11 1.08 8.03 -2.39 -0.02 1.06 16 49 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 51 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -75.64 392.15 4.83 -70.81 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.84 Total: 22.81 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 5.86 Total: -20.41 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -3.47 Total: -94.01 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.06 Total: -24.94 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.67 Total: 45.74 kcal Total: -75.64 4.83 -70.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116530664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.611 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds