Wall clock time and date at job start Tue Mar 31 2020 16:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47292 * 2 1 4 4 C 1.38272 * 120.14229 * 269.98235 * 3 2 1 5 5 C 1.37906 * 119.82701 * 180.26058 * 4 3 2 6 6 C 1.38980 * 120.58556 * 359.95178 * 5 4 3 7 7 C 1.37671 * 119.51579 * 359.64371 * 6 5 4 8 8 C 1.37957 * 120.14351 * 90.00036 * 3 2 1 9 9 C 1.50817 * 122.35770 * 180.65106 * 7 6 5 10 10 N 1.46685 * 109.66660 * 348.90937 * 9 7 6 11 11 C 1.34775 * 121.34963 * 224.35565 * 10 9 7 12 12 O 1.21582 * 120.00439 * 174.82438 * 11 10 9 13 13 N 1.34773 * 119.99719 * 354.81768 * 11 10 9 14 14 C 1.46504 * 120.00115 * 184.95432 * 13 11 10 15 15 C 1.53003 * 109.47517 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47025 * 300.00013 * 15 14 13 17 17 C 1.53002 * 109.46793 * 59.99561 * 15 14 13 18 18 C 1.50689 * 109.47347 * 179.97438 * 15 14 13 19 19 H 1.08009 * 119.99858 * 1.44845 * 18 15 14 20 20 C 1.37883 * 120.00363 * 181.44868 * 18 15 14 21 21 N 1.31516 * 120.00035 * 191.96599 * 20 18 15 22 22 Si 1.86796 * 119.99412 * 11.96536 * 20 18 15 23 23 H 1.48495 * 109.47426 * 84.68193 * 22 20 18 24 24 H 1.48505 * 109.46533 * 204.67981 * 22 20 18 25 25 H 1.48498 * 109.47391 * 324.67744 * 22 20 18 26 26 C 1.47243 * 117.30274 * 44.33159 * 10 9 7 27 27 C 1.50601 * 117.61148 * 179.54064 * 6 5 4 28 28 H 1.09006 * 109.47383 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47094 * 300.00082 * 1 2 3 30 30 H 1.09004 * 109.47569 * 60.00129 * 1 2 3 31 31 H 1.08999 * 109.47094 * 239.99918 * 2 1 3 32 32 H 1.09004 * 109.47569 * 119.99871 * 2 1 3 33 33 H 1.07996 * 120.08578 * 0.22699 * 4 3 2 34 34 H 1.07996 * 119.70811 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.74656 * 359.96416 * 8 3 2 36 36 H 1.09004 * 109.43873 * 228.84925 * 9 7 6 37 37 H 1.08995 * 109.40167 * 108.94821 * 9 7 6 38 38 H 0.97001 * 120.00153 * 4.95571 * 13 11 10 39 39 H 1.09002 * 109.46840 * 300.00289 * 14 13 11 40 40 H 1.09002 * 109.46856 * 59.99923 * 14 13 11 41 41 H 1.09003 * 109.46935 * 68.98215 * 16 15 14 42 42 H 1.08996 * 109.47130 * 188.98651 * 16 15 14 43 43 H 1.09004 * 109.46545 * 308.98600 * 16 15 14 44 44 H 1.08997 * 109.46771 * 60.00632 * 17 15 14 45 45 H 1.09005 * 109.46612 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.47658 * 300.00185 * 17 15 14 47 47 H 0.96996 * 119.99390 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.76993 * 176.06246 * 26 10 9 49 49 H 1.09004 * 109.81865 * 55.28834 * 26 10 9 50 50 H 1.09005 * 109.20003 * 40.05868 * 27 6 5 51 51 H 1.08995 * 109.20306 * 280.76950 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2641 2.0753 -1.1957 5 6 2.7289 3.3736 -1.1882 6 6 2.9664 4.0327 0.0121 7 6 2.7271 3.3825 1.2018 8 6 2.2632 2.0739 1.1930 9 6 2.9486 4.0412 2.5404 10 7 3.6767 5.3011 2.3561 11 6 4.7055 5.6402 3.1581 12 8 5.3518 6.6437 2.9265 13 7 5.0177 4.8670 4.2169 14 6 6.0643 5.2910 5.1503 15 6 6.2200 4.2417 6.2529 16 6 4.8961 4.0917 7.0050 17 6 6.6067 2.8995 5.6285 18 6 7.2969 4.6775 7.2126 19 1 7.8019 5.6209 7.0655 20 6 7.6376 3.8721 8.2787 21 7 8.3981 4.3437 9.2424 22 14 7.0188 2.1112 8.3539 23 1 7.9282 1.2332 7.5747 24 1 6.9850 1.6586 9.7679 25 1 5.6513 2.0421 7.7792 26 6 3.2385 6.1803 1.2593 27 6 3.4834 5.4455 -0.0577 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0821 1.5708 -2.1332 34 1 2.9097 3.8828 -2.1232 35 1 2.0821 1.5633 2.1273 36 1 3.5296 3.3766 3.1799 37 1 1.9852 4.2439 3.0080 38 1 4.5496 4.0297 4.3609 39 1 7.0076 5.3975 4.6146 40 1 5.7889 6.2475 5.5948 41 1 4.1580 3.6260 6.3519 42 1 5.0472 3.4676 7.8857 43 1 4.5399 5.0748 7.3130 44 1 7.5499 3.0063 5.0927 45 1 6.7173 2.1518 6.4139 46 1 5.8281 2.5840 4.9340 47 1 8.6374 3.7772 9.9925 48 1 3.8128 7.1065 1.2772 49 1 2.1767 6.4026 1.3656 50 1 2.9739 5.9743 -0.8633 51 1 4.5536 5.4258 -0.2635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121946668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:48 Heat of formation + Delta-G solvation = 2.595037 kcal Electronic energy + Delta-G solvation = -28818.139169 eV Core-core repulsion = 25103.513022 eV Total energy + Delta-G solvation = -3714.626148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70839 -39.41461 -37.14813 -36.23743 -34.24903 -33.44609 -32.48842 -31.54010 -30.84586 -28.91829 -26.44566 -26.32694 -25.55969 -24.88284 -24.24255 -22.71247 -22.12759 -20.77658 -19.32027 -19.05063 -17.81760 -16.59433 -16.08546 -16.05351 -15.72482 -15.48470 -15.18414 -15.03559 -14.55841 -14.16301 -14.02515 -13.96024 -13.74443 -13.53508 -13.17145 -13.07600 -12.92984 -12.73661 -12.55634 -12.50618 -12.28449 -12.19774 -12.08637 -11.74827 -11.51204 -11.39016 -11.30013 -11.10693 -10.83799 -10.41015 -10.31025 -10.13781 -10.03860 -9.83345 -9.10920 -9.04800 -8.76045 -8.68504 -8.63810 -8.49308 -8.29056 -6.13500 -4.11568 1.09750 1.13101 2.79457 3.23584 3.30653 3.38437 3.43692 3.47897 4.19654 4.35753 4.35889 4.42364 4.55775 4.70401 4.75291 4.90524 5.01356 5.03054 5.10182 5.12916 5.17378 5.22308 5.32558 5.37142 5.43667 5.55807 5.56792 5.69939 5.72171 5.78822 5.82009 5.85500 5.96397 6.04488 6.08679 6.17165 6.32411 6.35366 6.37040 6.42556 6.51543 6.54165 6.62521 6.71564 6.76739 6.82930 6.99130 7.15679 7.24213 7.44080 7.72964 8.23675 8.47122 8.88647 8.92449 9.49760 10.99686 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.003127 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.349475 B = 8951.373244 C =10524.861056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.069 4.069 7 C -0.089 4.089 8 C -0.111 4.111 9 C 0.153 3.847 10 N -0.635 5.635 11 C 0.708 3.292 12 O -0.591 6.591 13 N -0.738 5.738 14 C 0.159 3.841 15 C 0.028 3.972 16 C -0.144 4.144 17 C -0.145 4.145 18 C -0.511 4.511 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.893 5.893 22 Si 0.883 3.117 23 H -0.286 1.286 24 H -0.305 1.305 25 H -0.247 1.247 26 C 0.132 3.868 27 C -0.098 4.098 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.391 0.609 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.040 0.960 46 H 0.027 0.973 47 H 0.264 0.736 48 H 0.099 0.901 49 H 0.069 0.931 50 H 0.083 0.917 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.650 -6.619 -20.695 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.136 4.136 6 C -0.069 4.069 7 C -0.090 4.090 8 C -0.129 4.129 9 C 0.030 3.970 10 N -0.374 5.374 11 C 0.409 3.591 12 O -0.469 6.469 13 N -0.394 5.394 14 C 0.036 3.964 15 C 0.027 3.973 16 C -0.201 4.201 17 C -0.201 4.201 18 C -0.549 4.549 19 H 0.095 0.905 20 C -0.128 4.128 21 N -0.530 5.530 22 Si 0.716 3.284 23 H -0.214 1.214 24 H -0.234 1.234 25 H -0.173 1.173 26 C 0.008 3.992 27 C -0.136 4.136 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.118 0.882 49 H 0.087 0.913 50 H 0.102 0.898 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.032 -5.864 -20.616 27.377 hybrid contribution -0.400 -1.604 0.142 1.659 sum -17.432 -7.468 -20.473 27.907 Atomic orbital electron populations 1.21745 0.94709 1.01685 1.02214 1.20531 0.96170 0.92582 1.02924 1.19774 0.99416 0.96233 0.93064 1.20928 1.00180 0.94857 0.97508 1.21148 1.00039 0.95004 0.97403 1.19493 0.98920 0.96176 0.92292 1.19773 1.00295 0.94377 0.94591 1.20906 1.00180 0.93858 0.97992 1.20360 0.97356 0.85374 0.93940 1.47186 1.34661 1.21192 1.34358 1.15833 0.79974 0.83423 0.79844 1.90890 1.53249 1.28294 1.74456 1.45649 1.42360 1.24500 1.26865 1.21398 0.88341 0.98101 0.88527 1.18733 0.94884 0.91132 0.92553 1.22350 0.96890 1.00743 1.00131 1.22306 1.00085 0.98838 0.98917 1.20725 1.18893 1.07004 1.08248 0.90465 1.24976 0.94717 0.98340 0.94753 1.69935 1.37500 1.36195 1.09343 0.87348 0.80320 0.85648 0.75061 1.21387 1.23377 1.17262 1.21384 0.99847 0.93939 0.83997 1.20869 1.02040 0.92074 0.98625 0.92425 0.92479 0.92640 0.91102 0.90927 0.86245 0.86130 0.85893 0.89422 0.90275 0.77301 0.92100 0.92069 0.96138 0.92290 0.93345 0.92723 0.94153 0.95437 0.92567 0.88237 0.91319 0.89818 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.15 0.37 -0.53 16 2 C -0.08 -0.58 6.07 -27.89 -0.17 -0.75 16 3 C -0.08 -0.75 5.13 -104.71 -0.54 -1.29 16 4 C -0.12 -1.01 9.71 -39.69 -0.39 -1.40 16 5 C -0.12 -1.08 9.59 -39.43 -0.38 -1.46 16 6 C -0.07 -0.71 5.76 -104.60 -0.60 -1.32 16 7 C -0.09 -0.95 5.82 -104.55 -0.61 -1.56 16 8 C -0.11 -1.06 9.28 -39.46 -0.37 -1.43 16 9 C 0.15 1.67 6.07 -5.04 -0.03 1.64 16 10 N -0.64 -8.56 2.93 -180.12 -0.53 -9.09 16 11 C 0.71 12.38 8.32 -86.92 -0.72 11.66 16 12 O -0.59 -12.51 15.86 5.29 0.08 -12.42 16 13 N -0.74 -12.70 4.91 -65.22 -0.32 -13.02 16 14 C 0.16 3.27 4.50 -4.04 -0.02 3.25 16 15 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 16 C -0.14 -2.92 7.52 37.16 0.28 -2.64 16 17 C -0.14 -2.96 7.58 37.16 0.28 -2.68 16 18 C -0.51 -13.76 8.62 -34.44 -0.30 -14.06 16 19 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 20 C 0.07 2.08 5.35 -17.82 -0.10 1.98 16 21 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 22 Si 0.88 21.01 22.75 -169.99 -3.87 17.15 16 23 H -0.29 -6.80 7.07 56.52 0.40 -6.40 16 24 H -0.31 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.25 -5.30 4.61 56.52 0.26 -5.04 16 26 C 0.13 1.48 6.43 -3.75 -0.02 1.46 16 27 C -0.10 -0.96 5.86 -28.04 -0.16 -1.12 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.88 8.05 -52.49 -0.42 0.45 16 35 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 36 H 0.09 0.94 5.98 -51.93 -0.31 0.63 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.39 5.90 3.91 -40.82 -0.16 5.74 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.02 0.34 7.12 -51.93 -0.37 -0.03 16 42 H 0.06 1.27 4.09 -51.93 -0.21 1.06 16 43 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.04 0.87 2.35 -51.93 -0.12 0.75 16 46 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.10 1.25 7.10 -51.93 -0.37 0.88 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 51 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -32.12 384.75 -9.96 -42.09 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.35 Total: 5.19 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.55 Total: -9.69 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.07 Total: -48.12 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -3.87 Total: 17.15 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.12 -9.96 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121946668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.681 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds