Wall clock time and date at job start Tue Mar 31 2020 16:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47292 * 2 1 4 4 C 1.38272 * 120.14229 * 269.98235 * 3 2 1 5 5 C 1.37906 * 119.82701 * 180.26058 * 4 3 2 6 6 C 1.38980 * 120.58556 * 359.95178 * 5 4 3 7 7 C 1.37671 * 119.51579 * 359.64371 * 6 5 4 8 8 C 1.37957 * 120.14351 * 90.00036 * 3 2 1 9 9 C 1.50817 * 122.35770 * 180.65106 * 7 6 5 10 10 N 1.46685 * 109.66660 * 348.90937 * 9 7 6 11 11 C 1.34775 * 121.34963 * 224.35565 * 10 9 7 12 12 O 1.21582 * 120.00439 * 174.82438 * 11 10 9 13 13 N 1.34773 * 119.99719 * 354.81768 * 11 10 9 14 14 C 1.46504 * 120.00115 * 184.95432 * 13 11 10 15 15 C 1.53003 * 109.47517 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47025 * 300.00013 * 15 14 13 17 17 C 1.53002 * 109.46793 * 59.99561 * 15 14 13 18 18 C 1.50689 * 109.47347 * 179.97438 * 15 14 13 19 19 H 1.08009 * 119.99858 * 1.44845 * 18 15 14 20 20 C 1.37883 * 120.00363 * 181.44868 * 18 15 14 21 21 N 1.31516 * 120.00035 * 191.96599 * 20 18 15 22 22 Si 1.86796 * 119.99412 * 11.96536 * 20 18 15 23 23 H 1.48495 * 109.47426 * 84.68193 * 22 20 18 24 24 H 1.48505 * 109.46533 * 204.67981 * 22 20 18 25 25 H 1.48498 * 109.47391 * 324.67744 * 22 20 18 26 26 C 1.47243 * 117.30274 * 44.33159 * 10 9 7 27 27 C 1.50601 * 117.61148 * 179.54064 * 6 5 4 28 28 H 1.09006 * 109.47383 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47094 * 300.00082 * 1 2 3 30 30 H 1.09004 * 109.47569 * 60.00129 * 1 2 3 31 31 H 1.08999 * 109.47094 * 239.99918 * 2 1 3 32 32 H 1.09004 * 109.47569 * 119.99871 * 2 1 3 33 33 H 1.07996 * 120.08578 * 0.22699 * 4 3 2 34 34 H 1.07996 * 119.70811 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.74656 * 359.96416 * 8 3 2 36 36 H 1.09004 * 109.43873 * 228.84925 * 9 7 6 37 37 H 1.08995 * 109.40167 * 108.94821 * 9 7 6 38 38 H 0.97001 * 120.00153 * 4.95571 * 13 11 10 39 39 H 1.09002 * 109.46840 * 300.00289 * 14 13 11 40 40 H 1.09002 * 109.46856 * 59.99923 * 14 13 11 41 41 H 1.09003 * 109.46935 * 68.98215 * 16 15 14 42 42 H 1.08996 * 109.47130 * 188.98651 * 16 15 14 43 43 H 1.09004 * 109.46545 * 308.98600 * 16 15 14 44 44 H 1.08997 * 109.46771 * 60.00632 * 17 15 14 45 45 H 1.09005 * 109.46612 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.47658 * 300.00185 * 17 15 14 47 47 H 0.96996 * 119.99390 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.76993 * 176.06246 * 26 10 9 49 49 H 1.09004 * 109.81865 * 55.28834 * 26 10 9 50 50 H 1.09005 * 109.20003 * 40.05868 * 27 6 5 51 51 H 1.08995 * 109.20306 * 280.76950 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2641 2.0753 -1.1957 5 6 2.7289 3.3736 -1.1882 6 6 2.9664 4.0327 0.0121 7 6 2.7271 3.3825 1.2018 8 6 2.2632 2.0739 1.1930 9 6 2.9486 4.0412 2.5404 10 7 3.6767 5.3011 2.3561 11 6 4.7055 5.6402 3.1581 12 8 5.3518 6.6437 2.9265 13 7 5.0177 4.8670 4.2169 14 6 6.0643 5.2910 5.1503 15 6 6.2200 4.2417 6.2529 16 6 4.8961 4.0917 7.0050 17 6 6.6067 2.8995 5.6285 18 6 7.2969 4.6775 7.2126 19 1 7.8019 5.6209 7.0655 20 6 7.6376 3.8721 8.2787 21 7 8.3981 4.3437 9.2424 22 14 7.0188 2.1112 8.3539 23 1 7.9282 1.2332 7.5747 24 1 6.9850 1.6586 9.7679 25 1 5.6513 2.0421 7.7792 26 6 3.2385 6.1803 1.2593 27 6 3.4834 5.4455 -0.0577 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0821 1.5708 -2.1332 34 1 2.9097 3.8828 -2.1232 35 1 2.0821 1.5633 2.1273 36 1 3.5296 3.3766 3.1799 37 1 1.9852 4.2439 3.0080 38 1 4.5496 4.0297 4.3609 39 1 7.0076 5.3975 4.6146 40 1 5.7889 6.2475 5.5948 41 1 4.1580 3.6260 6.3519 42 1 5.0472 3.4676 7.8857 43 1 4.5399 5.0748 7.3130 44 1 7.5499 3.0063 5.0927 45 1 6.7173 2.1518 6.4139 46 1 5.8281 2.5840 4.9340 47 1 8.6374 3.7772 9.9925 48 1 3.8128 7.1065 1.2772 49 1 2.1767 6.4026 1.3656 50 1 2.9739 5.9743 -0.8633 51 1 4.5536 5.4258 -0.2635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121946668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:47 Heat of formation + Delta-G solvation = -16.056444 kcal Electronic energy + Delta-G solvation = -28818.947958 eV Core-core repulsion = 25103.513022 eV Total energy + Delta-G solvation = -3715.434937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.72104 -40.45790 -38.64001 -37.37673 -35.29158 -34.75853 -33.61372 -33.10146 -31.74091 -29.62744 -28.04345 -27.71488 -27.07699 -26.35109 -25.09999 -23.47639 -22.84179 -21.79514 -20.98232 -20.26960 -18.95275 -18.08031 -17.56922 -17.12184 -16.99759 -16.60766 -16.29144 -15.91140 -15.62860 -15.39974 -15.22977 -14.86155 -14.73516 -14.58671 -14.48741 -14.35349 -14.15713 -13.99461 -13.79996 -13.70620 -13.42152 -13.33901 -13.05804 -12.94631 -12.39576 -12.34489 -12.16567 -12.13445 -12.00692 -11.91637 -11.75782 -11.69454 -11.54561 -11.30770 -11.03576 -10.63526 -10.39405 -10.20766 -9.71944 -9.46904 -9.32167 -8.28892 -6.31826 0.40933 0.46566 1.37001 1.38352 1.51710 1.60755 2.11120 2.35652 2.76006 2.97711 3.07557 3.61987 3.72560 3.92004 4.02677 4.04615 4.11261 4.19495 4.28493 4.33237 4.36022 4.40303 4.44382 4.57177 4.58941 4.60806 4.72328 4.74165 4.78541 4.80813 4.84425 4.86135 4.93086 4.97647 5.04577 5.05331 5.13203 5.17861 5.21063 5.23782 5.41265 5.42152 5.42927 5.54212 5.55591 5.64993 5.73167 5.74601 5.79478 5.95400 6.12986 6.31500 6.72556 6.96432 7.33280 7.54329 8.88430 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.003127 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.349475 B = 8951.373244 C =10524.861056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.087 4.087 7 C -0.102 4.102 8 C -0.119 4.119 9 C 0.150 3.850 10 N -0.628 5.628 11 C 0.704 3.296 12 O -0.635 6.635 13 N -0.727 5.727 14 C 0.176 3.824 15 C 0.029 3.971 16 C -0.142 4.142 17 C -0.144 4.144 18 C -0.516 4.516 19 H 0.027 0.973 20 C 0.015 3.985 21 N -0.948 5.948 22 Si 0.942 3.058 23 H -0.282 1.282 24 H -0.314 1.314 25 H -0.198 1.198 26 C 0.127 3.873 27 C -0.090 4.090 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.405 0.595 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.036 0.964 46 H 0.069 0.931 47 H 0.265 0.735 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.109 0.891 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.959 -9.596 -22.762 32.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.140 4.140 5 C -0.141 4.141 6 C -0.087 4.087 7 C -0.103 4.103 8 C -0.137 4.137 9 C 0.028 3.972 10 N -0.365 5.365 11 C 0.406 3.594 12 O -0.517 6.517 13 N -0.384 5.384 14 C 0.052 3.948 15 C 0.028 3.972 16 C -0.199 4.199 17 C -0.200 4.200 18 C -0.555 4.555 19 H 0.046 0.954 20 C -0.182 4.182 21 N -0.588 5.588 22 Si 0.771 3.229 23 H -0.210 1.210 24 H -0.244 1.244 25 H -0.122 1.122 26 C 0.004 3.996 27 C -0.128 4.128 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.244 0.756 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.110 0.890 50 H 0.127 0.873 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.410 -8.868 -22.739 31.816 hybrid contribution 0.636 -0.567 0.683 1.092 sum -19.774 -9.435 -22.056 31.089 Atomic orbital electron populations 1.21725 0.94148 1.02294 1.01957 1.20568 0.96573 0.91472 1.03500 1.20062 0.98813 0.97108 0.92952 1.21221 0.99586 0.94796 0.98392 1.21368 0.99666 0.95372 0.97672 1.19626 0.99801 0.96383 0.92920 1.19808 1.01267 0.94976 0.94282 1.21093 1.00099 0.93522 0.98969 1.20581 0.97900 0.84024 0.94718 1.47211 1.33284 1.22337 1.33679 1.15969 0.80516 0.82806 0.80137 1.90863 1.55048 1.30233 1.75573 1.45272 1.41689 1.25094 1.26357 1.20909 0.88381 0.97021 0.88535 1.18651 0.94261 0.92332 0.91998 1.22263 0.96534 1.00867 1.00252 1.22238 1.01212 0.97170 0.99429 1.21025 1.19812 1.05171 1.09470 0.95448 1.25880 0.95028 1.03154 0.94107 1.70103 1.40023 1.38140 1.10516 0.86396 0.82366 0.79297 0.74820 1.20983 1.24366 1.12174 1.21572 1.00703 0.93129 0.84155 1.20795 1.01277 0.92343 0.98386 0.91418 0.92897 0.92735 0.90331 0.90595 0.84461 0.84571 0.84509 0.88963 0.88235 0.75618 0.94440 0.94176 0.91694 0.93180 0.93940 0.93698 0.94537 0.91196 0.92664 0.90133 0.88971 0.87285 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 71.98 0.71 -0.63 16 2 C -0.08 -0.89 6.07 29.84 0.18 -0.71 16 3 C -0.09 -1.31 5.13 -19.92 -0.10 -1.41 16 4 C -0.12 -1.76 9.71 22.20 0.22 -1.54 16 5 C -0.12 -1.92 9.59 22.37 0.21 -1.71 16 6 C -0.09 -1.60 5.76 -19.85 -0.11 -1.72 16 7 C -0.10 -1.88 5.82 -19.82 -0.12 -2.00 16 8 C -0.12 -1.88 9.28 22.35 0.21 -1.68 16 9 C 0.15 2.80 6.07 85.63 0.52 3.32 16 10 N -0.63 -15.85 2.93 -842.03 -2.47 -18.32 16 11 C 0.70 24.16 8.32 179.06 1.49 25.65 16 12 O -0.64 -27.52 15.86 -3.98 -0.06 -27.58 16 13 N -0.73 -23.85 4.91 -478.53 -2.35 -26.20 16 14 C 0.18 7.30 4.50 86.38 0.39 7.69 16 15 C 0.03 1.23 0.50 -52.93 -0.03 1.21 16 16 C -0.14 -5.33 7.52 71.98 0.54 -4.79 16 17 C -0.14 -5.45 7.58 71.98 0.55 -4.91 16 18 C -0.52 -28.77 8.62 25.60 0.22 -28.55 16 19 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 20 C 0.02 0.88 5.35 84.66 0.45 1.33 16 21 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 22 Si 0.94 42.41 22.75 68.60 1.56 43.97 16 23 H -0.28 -12.50 7.07 99.48 0.70 -11.80 16 24 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 25 H -0.20 -7.41 4.61 99.48 0.46 -6.96 16 26 C 0.13 2.69 6.43 86.17 0.55 3.24 16 27 C -0.09 -1.61 5.86 29.75 0.17 -1.44 16 28 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 32 H 0.08 0.76 8.09 -2.38 -0.02 0.75 16 33 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.14 1.60 8.05 -2.91 -0.02 1.58 16 35 H 0.14 1.70 8.05 -2.91 -0.02 1.67 16 36 H 0.09 1.61 5.98 -2.38 -0.01 1.60 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.40 10.74 3.91 -92.71 -0.36 10.37 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 1.87 7.12 -2.39 -0.02 1.85 16 42 H 0.05 1.97 4.09 -2.39 -0.01 1.96 16 43 H 0.04 1.63 8.12 -2.38 -0.02 1.61 16 44 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 45 H 0.04 1.43 2.35 -2.38 -0.01 1.42 16 46 H 0.07 2.05 6.86 -2.39 -0.02 2.04 16 47 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.08 2.03 7.10 -2.39 -0.02 2.01 16 49 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 50 H 0.11 1.35 8.11 -2.38 -0.02 1.33 16 51 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -73.85 384.75 3.35 -70.51 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.31 Total: 25.18 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 6.06 Total: -8.64 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.52 Total: -103.44 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.06 Total: -27.58 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.56 Total: 43.97 kcal Total: -73.85 3.35 -70.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121946668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.450 kcal (2) G-P(sol) polarization free energy of solvation -73.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds