Wall clock time and date at job start Tue Mar 31 2020 16:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.53280 * 2 1 4 4 C 1.53039 * 109.50303 * 239.90658 * 2 1 3 5 5 N 1.46846 * 109.52005 * 299.23829 * 4 2 1 6 6 C 1.46898 * 110.99773 * 174.16072 * 5 4 2 7 7 C 1.50701 * 109.47027 * 190.25284 * 6 5 4 8 8 C 1.38240 * 120.00320 * 269.72516 * 7 6 5 9 9 C 1.38228 * 120.00208 * 179.74474 * 8 7 6 10 10 C 1.38235 * 120.00001 * 0.54749 * 9 8 7 11 11 C 1.38230 * 119.99900 * 359.71051 * 10 9 8 12 12 C 1.38232 * 120.00182 * 90.00163 * 7 6 5 13 13 C 1.46847 * 111.19568 * 298.25307 * 5 4 2 14 14 C 1.53040 * 109.52116 * 61.74662 * 13 5 4 15 15 C 1.53117 * 109.50750 * 120.09824 * 2 1 3 16 16 H 1.09003 * 109.57298 * 182.21853 * 15 2 1 17 17 N 1.46497 * 109.52220 * 302.38381 * 15 2 1 18 18 C 1.34777 * 119.99525 * 204.67716 * 17 15 2 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 15 21 21 C 1.50703 * 109.47148 * 180.28037 * 20 18 17 22 22 H 1.08001 * 120.00037 * 359.97438 * 21 20 18 23 23 C 1.37875 * 120.00214 * 179.97438 * 21 20 18 24 24 N 1.31516 * 120.00297 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99907 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47496 * 89.99791 * 25 23 21 27 27 H 1.48503 * 109.47098 * 209.99926 * 25 23 21 28 28 H 1.48504 * 109.46915 * 329.99781 * 25 23 21 29 29 H 1.09001 * 109.47010 * 299.89955 * 1 2 3 30 30 H 1.08996 * 109.47613 * 59.89779 * 1 2 3 31 31 H 1.09004 * 109.47020 * 179.90306 * 1 2 3 32 32 H 1.09004 * 109.46801 * 180.10210 * 3 2 1 33 33 H 1.08999 * 109.47556 * 300.10251 * 3 2 1 34 34 H 1.09003 * 109.46925 * 60.10488 * 3 2 1 35 35 H 1.08999 * 109.46295 * 179.21806 * 4 2 1 36 36 H 1.09002 * 109.45962 * 59.25066 * 4 2 1 37 37 H 1.08997 * 109.47119 * 310.25097 * 6 5 4 38 38 H 1.09005 * 109.47446 * 70.25642 * 6 5 4 39 39 H 1.08007 * 119.99315 * 0.02562 * 8 7 6 40 40 H 1.08004 * 119.99861 * 180.27748 * 9 8 7 41 41 H 1.08005 * 120.00030 * 179.72434 * 10 9 8 42 42 H 1.08002 * 119.99826 * 179.97438 * 11 10 9 43 43 H 1.08004 * 119.99952 * 0.02562 * 12 7 6 44 44 H 1.09002 * 109.46563 * 301.72842 * 13 5 4 45 45 H 1.09005 * 109.46115 * 181.75853 * 13 5 4 46 46 H 1.09001 * 109.50058 * 180.87909 * 14 13 5 47 47 H 1.08996 * 109.50119 * 60.76236 * 14 13 5 48 48 H 0.97000 * 120.00580 * 24.68462 * 17 15 2 49 49 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 50 50 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 51 51 H 0.97001 * 119.99846 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0415 1.4420 0.0000 4 6 2.0409 -0.7233 -1.2481 5 7 1.5674 -2.1133 -1.2380 6 6 1.9222 -2.7993 -2.4876 7 6 1.2121 -4.1271 -2.5508 8 6 1.8155 -5.2590 -2.0353 9 6 1.1619 -6.4758 -2.0886 10 6 -0.0903 -6.5630 -2.6674 11 6 -0.6915 -5.4322 -3.1876 12 6 -0.0403 -4.2142 -3.1293 13 6 2.0846 -2.8419 -0.0726 14 6 1.5750 -2.1818 1.2106 15 6 2.0413 -0.7238 1.2487 16 1 3.1306 -0.6901 1.2699 17 7 1.5077 -0.0702 2.4463 18 6 2.1629 -0.1746 3.6194 19 8 3.1945 -0.8092 3.6835 20 6 1.6173 0.5028 4.8501 21 6 2.5337 0.2386 6.0169 22 1 3.4221 -0.3604 5.8811 23 6 2.2380 0.7614 7.2580 24 7 3.0374 0.5304 8.2764 25 14 0.7018 1.7980 7.4928 26 1 -0.4357 0.9197 7.8668 27 1 0.9353 2.7917 8.5714 28 1 0.3846 2.5067 6.2269 29 1 -0.3633 0.5123 0.8909 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3633 -1.0277 -0.0017 32 1 3.1316 1.4408 -0.0018 33 1 1.6773 1.9568 -0.8890 34 1 1.6802 1.9556 0.8910 35 1 3.1308 -0.7108 -1.2545 36 1 1.6668 -0.2187 -2.1390 37 1 1.6216 -2.1858 -3.3369 38 1 2.9996 -2.9617 -2.5198 39 1 2.7958 -5.1915 -1.5869 40 1 1.6316 -7.3592 -1.6818 41 1 -0.5991 -7.5146 -2.7130 42 1 -1.6698 -5.5004 -3.6403 43 1 -0.5098 -3.3309 -3.5365 44 1 3.1743 -2.8195 -0.0845 45 1 1.7423 -3.8761 -0.1097 46 1 1.9717 -2.7134 2.0756 47 1 0.4858 -2.2162 1.2297 48 1 0.6828 0.4375 2.3951 49 1 1.5524 1.5768 4.6751 50 1 0.6249 0.1101 5.0713 51 1 2.8295 0.8986 9.1494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143204882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:01 Heat of formation + Delta-G solvation = -16.623393 kcal Electronic energy + Delta-G solvation = -28793.801107 eV Core-core repulsion = 25078.341585 eV Total energy + Delta-G solvation = -3715.459521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50029 -39.40457 -38.10840 -35.67562 -33.09525 -32.80996 -32.22324 -31.12916 -30.72794 -29.37586 -27.31766 -26.73541 -26.03109 -23.75403 -22.85970 -22.34517 -21.93250 -20.82407 -19.56888 -18.56206 -17.00487 -16.89703 -16.52174 -15.81183 -15.61827 -15.44635 -15.23372 -14.80244 -14.63823 -14.40019 -14.09780 -13.94101 -13.66137 -13.46306 -13.26446 -13.12903 -12.95869 -12.74029 -12.41622 -12.14290 -12.03511 -11.95099 -11.78584 -11.70940 -11.46133 -11.34913 -11.18385 -11.12759 -10.83468 -10.73475 -10.55232 -10.42945 -10.26016 -9.93644 -9.23592 -9.13046 -9.02242 -8.72637 -8.56353 -8.44405 -8.42930 -6.00950 -4.00169 1.09538 1.18506 3.27940 3.34356 3.36278 3.42031 3.65413 3.83736 3.93073 4.42672 4.44630 4.55981 4.59708 4.77387 4.78304 4.81210 4.89069 5.04311 5.15118 5.16240 5.25647 5.29630 5.30741 5.34629 5.41214 5.44961 5.52921 5.55686 5.63977 5.71785 5.76445 5.81052 5.85628 5.93311 5.95131 6.03206 6.04905 6.16600 6.22295 6.26691 6.28804 6.31642 6.38921 6.54977 6.64929 6.75798 6.88157 6.93508 6.95498 7.09219 7.58220 8.20635 8.59991 9.15760 9.22559 9.57980 11.12158 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.002591 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.844257 B =10804.519158 C =11435.806771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.067 4.067 3 C -0.141 4.141 4 C 0.070 3.930 5 N -0.529 5.529 6 C 0.093 3.907 7 C -0.075 4.075 8 C -0.114 4.114 9 C -0.121 4.121 10 C -0.122 4.122 11 C -0.123 4.123 12 C -0.099 4.099 13 C 0.055 3.945 14 C -0.128 4.128 15 C 0.157 3.843 16 H 0.079 0.921 17 N -0.742 5.742 18 C 0.522 3.478 19 O -0.534 6.534 20 C -0.030 4.030 21 C -0.510 4.510 22 H 0.092 0.908 23 C 0.067 3.933 24 N -0.898 5.898 25 Si 0.875 3.125 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.267 1.267 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.034 0.966 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.393 0.607 49 H 0.044 0.956 50 H 0.040 0.960 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 -7.128 -27.606 29.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.068 4.068 3 C -0.199 4.199 4 C -0.058 4.058 5 N -0.253 5.253 6 C -0.034 4.034 7 C -0.075 4.075 8 C -0.132 4.132 9 C -0.139 4.139 10 C -0.141 4.141 11 C -0.141 4.141 12 C -0.117 4.117 13 C -0.073 4.073 14 C -0.167 4.167 15 C 0.052 3.948 16 H 0.098 0.902 17 N -0.397 5.397 18 C 0.311 3.689 19 O -0.408 6.408 20 C -0.070 4.070 21 C -0.548 4.548 22 H 0.110 0.890 23 C -0.134 4.134 24 N -0.537 5.537 25 Si 0.702 3.298 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.191 1.191 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.052 0.948 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.228 0.772 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.616 -7.522 -27.289 29.313 hybrid contribution -0.352 0.738 0.252 0.855 sum -7.968 -6.784 -27.037 28.992 Atomic orbital electron populations 1.21801 0.93561 1.02939 1.00817 1.20810 0.96965 0.95112 0.93889 1.21838 1.01166 0.94840 1.02048 1.22103 0.97449 0.88281 0.97954 1.61945 1.60040 1.01740 1.01575 1.21020 0.97109 0.92251 0.93049 1.19728 0.95150 0.94377 0.98248 1.21102 1.00081 0.92536 0.99505 1.21130 0.95427 0.97655 0.99680 1.21150 0.95608 0.98543 0.98765 1.21148 0.99868 0.92890 1.00157 1.21000 0.94218 0.97518 0.98992 1.22162 0.97097 0.98262 0.89740 1.22025 1.01945 0.96000 0.96688 1.20814 0.98859 0.91163 0.84013 0.90244 1.46377 1.28482 1.55941 1.08858 1.21366 0.83736 0.79686 0.84126 1.90572 1.23989 1.41201 1.85077 1.19679 0.98365 0.96676 0.92281 1.21004 1.09834 1.33116 0.90886 0.89028 1.24985 0.96495 0.96034 0.95856 1.69899 1.37480 1.45533 1.00804 0.86884 0.83994 0.80765 0.78181 1.20174 1.21185 1.19132 0.93204 0.92923 0.90894 0.92653 0.92638 0.91784 0.94622 0.90462 0.89959 0.93970 0.86304 0.86164 0.86309 0.86222 0.86069 0.94798 0.90196 0.90731 0.90819 0.77201 0.93779 0.94186 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 7.83 37.15 0.29 -1.04 16 2 C -0.07 -0.72 0.57 -154.43 -0.09 -0.81 16 3 C -0.14 -1.47 8.35 37.16 0.31 -1.16 16 4 C 0.07 0.67 4.18 -3.83 -0.02 0.66 16 5 N -0.53 -5.19 3.93 -236.11 -0.93 -6.12 16 6 C 0.09 0.79 5.12 -4.98 -0.03 0.76 16 7 C -0.07 -0.67 4.89 -104.62 -0.51 -1.18 16 8 C -0.11 -1.03 7.90 -39.58 -0.31 -1.34 16 9 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 10 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 11 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 12 C -0.10 -0.84 9.70 -39.58 -0.38 -1.23 16 13 C 0.06 0.64 5.17 -3.83 -0.02 0.62 16 14 C -0.13 -1.75 5.32 -26.65 -0.14 -1.89 16 15 C 0.16 2.23 1.63 -67.81 -0.11 2.12 16 16 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 17 N -0.74 -12.04 4.37 -53.69 -0.23 -12.27 16 18 C 0.52 11.45 7.79 -10.98 -0.09 11.37 16 19 O -0.53 -13.84 15.13 5.55 0.08 -13.75 16 20 C -0.03 -0.72 4.53 -29.03 -0.13 -0.85 16 21 C -0.51 -15.09 9.48 -34.44 -0.33 -15.42 16 22 H 0.09 3.08 7.00 -52.49 -0.37 2.71 16 23 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 24 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 25 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 29 H 0.05 0.49 6.41 -51.93 -0.33 0.16 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.80 6.01 -51.93 -0.31 0.48 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.73 7.62 -51.93 -0.40 0.33 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.63 8.01 -51.93 -0.42 0.22 16 37 H 0.08 0.60 7.93 -51.93 -0.41 0.18 16 38 H 0.04 0.35 8.06 -51.93 -0.42 -0.07 16 39 H 0.12 0.99 7.97 -52.48 -0.42 0.57 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 41 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.91 5.77 -51.93 -0.30 0.61 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.07 0.99 6.58 -51.93 -0.34 0.65 16 48 H 0.39 5.43 6.66 -40.82 -0.27 5.16 16 49 H 0.04 1.00 7.20 -51.92 -0.37 0.62 16 50 H 0.04 0.90 7.57 -51.93 -0.39 0.50 16 51 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -33.80 393.43 -10.43 -44.23 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.54 Total: 4.67 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.84 Total: -11.72 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.39 Total: -45.81 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.08 Total: -13.75 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.80 -10.43 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.606 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds