Wall clock time and date at job start Tue Mar 31 2020 16:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.53280 * 2 1 4 4 C 1.53039 * 109.50303 * 239.90658 * 2 1 3 5 5 N 1.46846 * 109.52005 * 299.23829 * 4 2 1 6 6 C 1.46898 * 110.99773 * 174.16072 * 5 4 2 7 7 C 1.50701 * 109.47027 * 190.25284 * 6 5 4 8 8 C 1.38240 * 120.00320 * 269.72516 * 7 6 5 9 9 C 1.38228 * 120.00208 * 179.74474 * 8 7 6 10 10 C 1.38235 * 120.00001 * 0.54749 * 9 8 7 11 11 C 1.38230 * 119.99900 * 359.71051 * 10 9 8 12 12 C 1.38232 * 120.00182 * 90.00163 * 7 6 5 13 13 C 1.46847 * 111.19568 * 298.25307 * 5 4 2 14 14 C 1.53040 * 109.52116 * 61.74662 * 13 5 4 15 15 C 1.53117 * 109.50750 * 120.09824 * 2 1 3 16 16 H 1.09003 * 109.57298 * 182.21853 * 15 2 1 17 17 N 1.46497 * 109.52220 * 302.38381 * 15 2 1 18 18 C 1.34777 * 119.99525 * 204.67716 * 17 15 2 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 15 21 21 C 1.50703 * 109.47148 * 180.28037 * 20 18 17 22 22 H 1.08001 * 120.00037 * 359.97438 * 21 20 18 23 23 C 1.37875 * 120.00214 * 179.97438 * 21 20 18 24 24 N 1.31516 * 120.00297 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99907 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47496 * 89.99791 * 25 23 21 27 27 H 1.48503 * 109.47098 * 209.99926 * 25 23 21 28 28 H 1.48504 * 109.46915 * 329.99781 * 25 23 21 29 29 H 1.09001 * 109.47010 * 299.89955 * 1 2 3 30 30 H 1.08996 * 109.47613 * 59.89779 * 1 2 3 31 31 H 1.09004 * 109.47020 * 179.90306 * 1 2 3 32 32 H 1.09004 * 109.46801 * 180.10210 * 3 2 1 33 33 H 1.08999 * 109.47556 * 300.10251 * 3 2 1 34 34 H 1.09003 * 109.46925 * 60.10488 * 3 2 1 35 35 H 1.08999 * 109.46295 * 179.21806 * 4 2 1 36 36 H 1.09002 * 109.45962 * 59.25066 * 4 2 1 37 37 H 1.08997 * 109.47119 * 310.25097 * 6 5 4 38 38 H 1.09005 * 109.47446 * 70.25642 * 6 5 4 39 39 H 1.08007 * 119.99315 * 0.02562 * 8 7 6 40 40 H 1.08004 * 119.99861 * 180.27748 * 9 8 7 41 41 H 1.08005 * 120.00030 * 179.72434 * 10 9 8 42 42 H 1.08002 * 119.99826 * 179.97438 * 11 10 9 43 43 H 1.08004 * 119.99952 * 0.02562 * 12 7 6 44 44 H 1.09002 * 109.46563 * 301.72842 * 13 5 4 45 45 H 1.09005 * 109.46115 * 181.75853 * 13 5 4 46 46 H 1.09001 * 109.50058 * 180.87909 * 14 13 5 47 47 H 1.08996 * 109.50119 * 60.76236 * 14 13 5 48 48 H 0.97000 * 120.00580 * 24.68462 * 17 15 2 49 49 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 50 50 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 51 51 H 0.97001 * 119.99846 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0415 1.4420 0.0000 4 6 2.0409 -0.7233 -1.2481 5 7 1.5674 -2.1133 -1.2380 6 6 1.9222 -2.7993 -2.4876 7 6 1.2121 -4.1271 -2.5508 8 6 1.8155 -5.2590 -2.0353 9 6 1.1619 -6.4758 -2.0886 10 6 -0.0903 -6.5630 -2.6674 11 6 -0.6915 -5.4322 -3.1876 12 6 -0.0403 -4.2142 -3.1293 13 6 2.0846 -2.8419 -0.0726 14 6 1.5750 -2.1818 1.2106 15 6 2.0413 -0.7238 1.2487 16 1 3.1306 -0.6901 1.2699 17 7 1.5077 -0.0702 2.4463 18 6 2.1629 -0.1746 3.6194 19 8 3.1945 -0.8092 3.6835 20 6 1.6173 0.5028 4.8501 21 6 2.5337 0.2386 6.0169 22 1 3.4221 -0.3604 5.8811 23 6 2.2380 0.7614 7.2580 24 7 3.0374 0.5304 8.2764 25 14 0.7018 1.7980 7.4928 26 1 -0.4357 0.9197 7.8668 27 1 0.9353 2.7917 8.5714 28 1 0.3846 2.5067 6.2269 29 1 -0.3633 0.5123 0.8909 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3633 -1.0277 -0.0017 32 1 3.1316 1.4408 -0.0018 33 1 1.6773 1.9568 -0.8890 34 1 1.6802 1.9556 0.8910 35 1 3.1308 -0.7108 -1.2545 36 1 1.6668 -0.2187 -2.1390 37 1 1.6216 -2.1858 -3.3369 38 1 2.9996 -2.9617 -2.5198 39 1 2.7958 -5.1915 -1.5869 40 1 1.6316 -7.3592 -1.6818 41 1 -0.5991 -7.5146 -2.7130 42 1 -1.6698 -5.5004 -3.6403 43 1 -0.5098 -3.3309 -3.5365 44 1 3.1743 -2.8195 -0.0845 45 1 1.7423 -3.8761 -0.1097 46 1 1.9717 -2.7134 2.0756 47 1 0.4858 -2.2162 1.2297 48 1 0.6828 0.4375 2.3951 49 1 1.5524 1.5768 4.6751 50 1 0.6249 0.1101 5.0713 51 1 2.8295 0.8986 9.1494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143204882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:00 Heat of formation + Delta-G solvation = -38.208464 kcal Electronic energy + Delta-G solvation = -28794.737105 eV Core-core repulsion = 25078.341585 eV Total energy + Delta-G solvation = -3716.395520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.55860 -40.30019 -39.45680 -36.67665 -35.01373 -34.35730 -33.16977 -32.01451 -31.73464 -31.04717 -28.12736 -27.53228 -27.11375 -25.33407 -23.74982 -23.49783 -22.74741 -21.56662 -21.22379 -19.61857 -19.03584 -17.82923 -17.56500 -17.21378 -16.59637 -16.41389 -16.21987 -16.06201 -15.93921 -15.59747 -15.30887 -15.11977 -14.82243 -14.57506 -14.24419 -14.16762 -14.09301 -13.78265 -13.50323 -13.37803 -13.21698 -12.85229 -12.82809 -12.72130 -12.60982 -12.45341 -12.40008 -12.29958 -11.91418 -11.86581 -11.80641 -11.64063 -11.53463 -11.39576 -11.29983 -10.79126 -10.52769 -9.93073 -9.74261 -9.66586 -9.24802 -8.26401 -6.34744 0.46422 0.56127 1.38986 1.43312 1.53818 1.89049 2.37666 2.39979 2.72841 3.06958 3.18230 3.55789 3.75592 3.87179 3.90103 4.01173 4.15710 4.20539 4.23212 4.25701 4.33426 4.37104 4.41655 4.48359 4.61714 4.64330 4.67247 4.71705 4.75276 4.79379 4.83166 4.88125 4.94529 4.95232 5.04509 5.06514 5.15451 5.16581 5.18246 5.21734 5.28493 5.37485 5.48820 5.60385 5.62864 5.66748 5.68016 5.74343 6.05334 6.09199 6.19235 6.25590 6.70071 6.87793 7.25968 7.54296 8.91351 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.002591 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.844257 B =10804.519158 C =11435.806771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 C -0.140 4.140 4 C 0.071 3.929 5 N -0.524 5.524 6 C 0.095 3.905 7 C -0.085 4.085 8 C -0.129 4.129 9 C -0.134 4.134 10 C -0.130 4.130 11 C -0.129 4.129 12 C -0.105 4.105 13 C 0.065 3.935 14 C -0.121 4.121 15 C 0.156 3.844 16 H 0.048 0.952 17 N -0.716 5.716 18 C 0.521 3.479 19 O -0.587 6.587 20 C -0.028 4.028 21 C -0.532 4.532 22 H 0.027 0.973 23 C 0.000 4.000 24 N -0.955 5.955 25 Si 0.962 3.038 26 H -0.262 1.262 27 H -0.285 1.285 28 H -0.229 1.229 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.028 0.972 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.040 0.960 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.022 0.978 45 H 0.081 0.919 46 H 0.037 0.963 47 H 0.082 0.918 48 H 0.410 0.590 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 -5.411 -30.410 33.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C -0.198 4.198 4 C -0.057 4.057 5 N -0.248 5.248 6 C -0.032 4.032 7 C -0.086 4.086 8 C -0.148 4.148 9 C -0.152 4.152 10 C -0.148 4.148 11 C -0.147 4.147 12 C -0.124 4.124 13 C -0.063 4.063 14 C -0.160 4.160 15 C 0.051 3.949 16 H 0.066 0.934 17 N -0.370 5.370 18 C 0.310 3.690 19 O -0.466 6.466 20 C -0.068 4.068 21 C -0.571 4.571 22 H 0.045 0.955 23 C -0.196 4.196 24 N -0.595 5.595 25 Si 0.783 3.217 26 H -0.187 1.187 27 H -0.211 1.211 28 H -0.152 1.152 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.059 0.941 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.041 0.959 45 H 0.099 0.901 46 H 0.056 0.944 47 H 0.100 0.900 48 H 0.248 0.752 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.415 -5.799 -30.164 32.769 hybrid contribution 0.916 0.096 1.092 1.428 sum -10.499 -5.703 -29.072 31.432 Atomic orbital electron populations 1.21774 0.92113 1.02785 1.02024 1.20777 0.97919 0.95039 0.92138 1.21839 1.00440 0.94504 1.03000 1.22161 0.97177 0.88129 0.98254 1.61949 1.59647 1.01822 1.01414 1.21068 0.97075 0.92328 0.92692 1.19839 0.95638 0.94435 0.98680 1.21230 1.00318 0.93151 1.00089 1.21361 0.95936 0.97932 0.99951 1.21440 0.95488 0.99555 0.98366 1.21454 1.00686 0.92691 0.99844 1.21230 0.94021 0.98324 0.98815 1.21979 0.96319 0.98372 0.89653 1.21913 1.02150 0.95356 0.96606 1.20963 0.97200 0.92034 0.84744 0.93422 1.46064 1.28208 1.54876 1.07810 1.21152 0.83297 0.79214 0.85379 1.90564 1.26438 1.43621 1.85988 1.19599 0.97961 0.98313 0.90916 1.21169 1.09215 1.32827 0.93843 0.95495 1.26164 1.01117 0.97514 0.94841 1.70101 1.40458 1.47248 1.01702 0.85521 0.78031 0.78539 0.79615 1.18700 1.21135 1.15165 0.93015 0.90706 0.91696 0.93915 0.89840 0.92631 0.95363 0.87633 0.87919 0.94147 0.86559 0.85226 0.84615 0.84285 0.84631 0.95941 0.90062 0.94379 0.89966 0.75151 0.91319 0.91607 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 7.83 71.98 0.56 -1.54 16 2 C -0.06 -1.11 0.57 -52.13 -0.03 -1.14 16 3 C -0.14 -2.57 8.35 71.98 0.60 -1.97 16 4 C 0.07 1.18 4.18 86.33 0.36 1.54 16 5 N -0.52 -9.35 3.93 -900.91 -3.54 -12.88 16 6 C 0.10 1.42 5.12 85.56 0.44 1.86 16 7 C -0.09 -1.42 4.89 -19.86 -0.10 -1.51 16 8 C -0.13 -2.29 7.90 22.27 0.18 -2.11 16 9 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 10 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 11 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 12 C -0.11 -1.57 9.70 22.27 0.22 -1.35 16 13 C 0.07 1.51 5.17 86.33 0.45 1.96 16 14 C -0.12 -3.39 5.32 30.65 0.16 -3.23 16 15 C 0.16 4.42 1.63 45.07 0.07 4.50 16 16 H 0.05 1.69 7.58 -2.39 -0.02 1.67 16 17 N -0.72 -22.78 4.37 -442.16 -1.93 -24.71 16 18 C 0.52 23.35 7.79 87.66 0.68 24.04 16 19 O -0.59 -32.50 15.13 -3.04 -0.05 -32.55 16 20 C -0.03 -1.32 4.53 29.10 0.13 -1.19 16 21 C -0.53 -32.72 9.48 25.60 0.24 -32.48 16 22 H 0.03 1.95 7.00 -2.91 -0.02 1.93 16 23 C 0.00 -0.02 5.47 84.65 0.46 0.45 16 24 N -0.95 -62.22 13.96 21.45 0.30 -61.92 16 25 Si 0.96 42.71 27.47 68.60 1.88 44.60 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 27 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 28 H -0.23 -8.74 6.54 99.48 0.65 -8.09 16 29 H 0.05 0.82 6.41 -2.39 -0.02 0.80 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.20 6.01 -2.38 -0.01 1.18 16 32 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.12 7.62 -2.39 -0.02 1.10 16 35 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.11 1.25 8.01 -2.39 -0.02 1.23 16 37 H 0.10 1.14 7.93 -2.39 -0.02 1.12 16 38 H 0.04 0.63 8.06 -2.38 -0.02 0.61 16 39 H 0.12 2.00 7.97 -2.91 -0.02 1.98 16 40 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.02 0.56 8.14 -2.39 -0.02 0.55 16 45 H 0.08 1.87 5.77 -2.38 -0.01 1.86 16 46 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.08 2.15 6.58 -2.39 -0.02 2.13 16 48 H 0.41 10.30 6.66 -92.71 -0.62 9.68 16 49 H 0.07 2.90 7.20 -2.38 -0.02 2.88 16 50 H 0.07 2.77 7.57 -2.39 -0.02 2.75 16 51 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -79.83 393.43 2.01 -77.83 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.24 Total: 27.07 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 5.10 Total: -17.44 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -5.17 Total: -99.52 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.05 Total: -32.55 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.60 kcal Total: -79.83 2.01 -77.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.618 kcal (2) G-P(sol) polarization free energy of solvation -79.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds