Wall clock time and date at job start Tue Mar 31 2020 16:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.53594 * 2 1 4 4 C 1.53053 * 109.55636 * 239.93451 * 2 1 3 5 5 N 1.46842 * 109.57279 * 180.94201 * 4 2 1 6 6 C 1.46898 * 110.99902 * 185.80442 * 5 4 2 7 7 C 1.50697 * 109.47352 * 169.74710 * 6 5 4 8 8 C 1.38238 * 119.99722 * 269.72830 * 7 6 5 9 9 C 1.38241 * 119.99530 * 179.78665 * 8 7 6 10 10 C 1.38230 * 120.00442 * 0.46565 * 9 8 7 11 11 C 1.38240 * 119.99477 * 359.76325 * 10 9 8 12 12 C 1.38230 * 120.00430 * 0.02956 * 11 10 9 13 13 C 1.46850 * 111.19875 * 61.71108 * 5 4 2 14 14 C 1.53039 * 109.52191 * 298.25426 * 13 5 4 15 15 C 1.53117 * 109.50427 * 120.10372 * 2 1 3 16 16 H 1.08996 * 109.52859 * 57.62538 * 15 2 1 17 17 N 1.46499 * 109.51944 * 297.49655 * 15 2 1 18 18 C 1.34784 * 119.99893 * 155.12875 * 17 15 2 19 19 O 1.21283 * 119.99649 * 0.02562 * 18 17 15 20 20 C 1.50697 * 119.99774 * 179.72962 * 18 17 15 21 21 C 1.50700 * 109.46617 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00295 * 359.97438 * 21 20 18 23 23 C 1.37888 * 119.99812 * 179.97438 * 21 20 18 24 24 N 1.31510 * 119.99839 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99999 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46620 * 90.00235 * 25 23 21 27 27 H 1.48494 * 109.47045 * 210.00014 * 25 23 21 28 28 H 1.48494 * 109.47337 * 330.00611 * 25 23 21 29 29 H 1.09001 * 109.47312 * 299.89717 * 1 2 3 30 30 H 1.09001 * 109.47509 * 59.90252 * 1 2 3 31 31 H 1.09002 * 109.46997 * 179.89730 * 1 2 3 32 32 H 1.08994 * 109.47270 * 180.09910 * 3 2 1 33 33 H 1.08997 * 109.47242 * 300.10313 * 3 2 1 34 34 H 1.09005 * 109.46833 * 60.09594 * 3 2 1 35 35 H 1.08997 * 109.46470 * 60.89556 * 4 2 1 36 36 H 1.09007 * 109.39739 * 300.95295 * 4 2 1 37 37 H 1.09004 * 109.47287 * 289.74585 * 6 5 4 38 38 H 1.09007 * 109.47112 * 49.74336 * 6 5 4 39 39 H 1.07997 * 120.00394 * 359.97438 * 8 7 6 40 40 H 1.08003 * 119.99356 * 180.25467 * 9 8 7 41 41 H 1.07992 * 119.99982 * 179.79193 * 10 9 8 42 42 H 1.08005 * 119.99453 * 180.02562 * 11 10 9 43 43 H 1.07999 * 119.99972 * 179.97438 * 12 11 10 44 44 H 1.08997 * 109.46439 * 178.23597 * 13 5 4 45 45 H 1.09001 * 109.46156 * 58.27069 * 13 5 4 46 46 H 1.08997 * 109.50590 * 299.23820 * 14 13 5 47 47 H 1.09003 * 109.50200 * 179.12045 * 14 13 5 48 48 H 0.97005 * 120.00261 * 335.13087 * 17 15 2 49 49 H 1.09001 * 109.46809 * 299.99238 * 20 18 17 50 50 H 1.08993 * 109.47525 * 59.99679 * 20 18 17 51 51 H 0.97001 * 120.00258 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0423 -0.7225 -1.2482 5 7 3.5106 -0.7425 -1.2372 6 6 4.0387 -1.3062 -2.4866 7 6 5.5277 -1.0823 -2.5489 8 6 6.0301 0.0660 -3.1319 9 6 7.3958 0.2735 -3.1851 10 6 8.2593 -0.6718 -2.6640 11 6 7.7570 -1.8223 -2.0853 12 6 6.3912 -2.0278 -2.0282 13 6 4.0230 -1.4743 -0.0717 14 6 3.5712 -0.7733 1.2115 15 6 2.0412 -0.7239 1.2486 16 1 1.6444 -1.7389 1.2695 17 7 1.6037 -0.0025 2.4463 18 6 1.4792 -0.6557 3.6186 19 8 1.7299 -1.8407 3.6821 20 6 1.0351 0.0877 4.8519 21 6 0.9779 -0.8642 6.0188 22 1 1.2368 -1.9036 5.8810 23 6 0.5950 -0.4081 7.2624 24 7 0.2801 0.8576 7.4303 25 14 0.5234 -1.5882 8.7087 26 1 1.8396 -1.6090 9.3961 27 1 -0.5251 -1.1415 9.6606 28 1 0.1990 -2.9521 8.2192 29 1 -0.3634 0.5122 0.8909 30 1 -0.3634 0.5153 -0.8891 31 1 -0.3633 -1.0277 -0.0018 32 1 3.1316 1.4407 -0.0018 33 1 1.6774 1.9567 -0.8890 34 1 1.6802 1.9556 0.8909 35 1 1.6929 -0.2007 -2.1390 36 1 1.6652 -1.7453 -1.2549 37 1 3.8305 -2.3757 -2.5193 38 1 3.5618 -0.8171 -3.3361 39 1 5.3556 0.8025 -3.5431 40 1 7.7881 1.1726 -3.6368 41 1 9.3263 -0.5112 -2.7086 42 1 8.4317 -2.5607 -1.6778 43 1 5.9989 -2.9269 -1.5765 44 1 5.1121 -1.4985 -0.1082 45 1 3.6366 -2.4934 -0.0842 46 1 3.9686 0.2414 1.2311 47 1 3.9386 -1.3255 2.0765 48 1 1.4036 0.9453 2.3956 49 1 1.7440 0.8865 5.0696 50 1 0.0469 0.5151 4.6824 51 1 0.0104 1.1785 8.3051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143204883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:04 Heat of formation + Delta-G solvation = -22.047775 kcal Electronic energy + Delta-G solvation = -28740.097733 eV Core-core repulsion = 25024.402993 eV Total energy + Delta-G solvation = -3715.694740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.44422 -39.36324 -38.00490 -35.62120 -33.02997 -32.86826 -32.18262 -31.11203 -30.60789 -28.74503 -27.24908 -26.69436 -25.93938 -23.83945 -22.84134 -22.53651 -21.89850 -20.79828 -19.52532 -18.52314 -16.98606 -16.52172 -16.30433 -15.79952 -15.58989 -15.43066 -15.09046 -14.77132 -14.56598 -14.48527 -14.13835 -13.81809 -13.63678 -13.36910 -13.21994 -13.06383 -12.75853 -12.68304 -12.32229 -12.05095 -11.97759 -11.88304 -11.71700 -11.57549 -11.39185 -11.18919 -11.11822 -11.08269 -10.78393 -10.69709 -10.58758 -10.37570 -10.20170 -9.90706 -9.23673 -9.11279 -9.00384 -8.58486 -8.42691 -8.39851 -8.31811 -6.02943 -4.01970 1.11300 1.20120 3.36391 3.41498 3.44179 3.48655 3.78362 3.92972 3.98383 4.47872 4.51324 4.60878 4.61583 4.79614 4.83592 4.85421 4.91402 5.07054 5.18696 5.20580 5.27732 5.34997 5.35675 5.37961 5.43291 5.50029 5.56885 5.60768 5.70287 5.76753 5.78194 5.82883 5.91794 5.99134 6.00934 6.10731 6.14872 6.23883 6.24354 6.30304 6.32449 6.40490 6.44590 6.62892 6.77637 6.91651 6.97008 7.15500 7.26111 7.37444 7.99130 8.12226 8.51164 9.09052 9.31512 9.63037 11.09543 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002531 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.690096 B =11061.747680 C =11915.897528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.134 4.134 4 C 0.070 3.930 5 N -0.529 5.529 6 C 0.093 3.907 7 C -0.074 4.074 8 C -0.099 4.099 9 C -0.122 4.122 10 C -0.123 4.123 11 C -0.121 4.121 12 C -0.114 4.114 13 C 0.056 3.944 14 C -0.127 4.127 15 C 0.157 3.843 16 H 0.077 0.923 17 N -0.741 5.741 18 C 0.515 3.485 19 O -0.548 6.548 20 C 0.005 3.995 21 C -0.506 4.506 22 H 0.074 0.926 23 C 0.054 3.946 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.280 1.280 27 H -0.287 1.287 28 H -0.272 1.272 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.079 0.921 45 H 0.033 0.967 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.394 0.606 49 H 0.046 0.954 50 H 0.046 0.954 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.850 0.470 -25.429 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.191 4.191 4 C -0.058 4.058 5 N -0.253 5.253 6 C -0.034 4.034 7 C -0.075 4.075 8 C -0.117 4.117 9 C -0.140 4.140 10 C -0.141 4.141 11 C -0.139 4.139 12 C -0.132 4.132 13 C -0.072 4.072 14 C -0.166 4.166 15 C 0.051 3.949 16 H 0.096 0.904 17 N -0.395 5.395 18 C 0.305 3.695 19 O -0.424 6.424 20 C -0.035 4.035 21 C -0.544 4.544 22 H 0.092 0.908 23 C -0.147 4.147 24 N -0.541 5.541 25 Si 0.728 3.272 26 H -0.206 1.206 27 H -0.213 1.213 28 H -0.197 1.197 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.229 0.771 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.100 0.193 -25.178 27.129 hybrid contribution -0.378 -0.866 0.784 1.228 sum 9.722 -0.672 -24.394 26.269 Atomic orbital electron populations 1.21832 0.93884 1.02037 1.02112 1.20808 0.95468 0.96621 0.93854 1.21803 1.02487 0.93963 1.00892 1.22107 0.86764 0.98872 0.98034 1.61936 1.07785 1.54009 1.01539 1.21021 0.91255 0.98064 0.93100 1.19730 0.94854 0.94717 0.98165 1.21006 0.95160 0.96573 0.98975 1.21150 0.93556 0.99188 1.00144 1.21145 0.99665 0.94462 0.98807 1.21127 0.95292 0.97786 0.99713 1.21094 0.93421 0.99210 0.99512 1.22163 1.00389 0.94871 0.89817 1.22022 0.96259 1.01799 0.96538 1.20790 0.93394 0.96461 0.84242 0.90449 1.46421 1.71320 1.12945 1.08862 1.21972 0.74899 0.88051 0.84575 1.90522 1.49856 1.16623 1.85404 1.19225 0.98081 0.96840 0.89310 1.21169 1.44672 0.96369 0.92207 0.90753 1.25010 0.95365 0.95297 0.98997 1.69958 1.46503 1.14026 1.23645 0.86445 0.77646 0.81281 0.81811 1.20639 1.21301 1.19718 0.91663 0.92674 0.92762 0.90949 0.92966 0.93062 0.90482 0.94709 0.94016 0.89957 0.86048 0.86212 0.86317 0.86193 0.86333 0.90246 0.94890 0.90808 0.90839 0.77073 0.93584 0.93644 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.35 37.16 0.31 -1.25 16 2 C -0.07 -0.75 0.58 -154.42 -0.09 -0.84 16 3 C -0.13 -1.43 7.83 37.16 0.29 -1.14 16 4 C 0.07 0.70 4.18 -3.83 -0.02 0.69 16 5 N -0.53 -5.39 3.93 -236.10 -0.93 -6.32 16 6 C 0.09 0.81 5.12 -4.98 -0.03 0.78 16 7 C -0.07 -0.69 4.89 -104.62 -0.51 -1.20 16 8 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 9 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 10 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 11 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 12 C -0.11 -1.05 7.89 -39.59 -0.31 -1.36 16 13 C 0.06 0.66 5.16 -3.83 -0.02 0.64 16 14 C -0.13 -1.81 5.32 -26.65 -0.14 -1.95 16 15 C 0.16 2.32 1.63 -67.81 -0.11 2.21 16 16 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 17 N -0.74 -12.69 4.37 -53.69 -0.23 -12.93 16 18 C 0.51 11.71 7.79 -10.98 -0.09 11.62 16 19 O -0.55 -14.26 15.12 5.56 0.08 -14.18 16 20 C 0.00 0.12 5.46 -29.04 -0.16 -0.04 16 21 C -0.51 -14.83 8.92 -34.44 -0.31 -15.14 16 22 H 0.07 2.28 6.75 -52.49 -0.35 1.92 16 23 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 24 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 25 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 29 H 0.06 0.80 7.62 -51.93 -0.40 0.40 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.84 6.02 -51.93 -0.31 0.53 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.56 6.41 -51.93 -0.33 0.22 16 35 H 0.08 0.66 8.01 -51.93 -0.42 0.25 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.04 0.36 8.07 -51.93 -0.42 -0.06 16 38 H 0.08 0.62 7.92 -51.93 -0.41 0.21 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 43 H 0.12 1.01 7.95 -52.49 -0.42 0.59 16 44 H 0.08 0.92 5.75 -51.93 -0.30 0.63 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 1.04 6.59 -51.93 -0.34 0.70 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.39 5.95 6.66 -40.82 -0.27 5.68 16 49 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 51 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -32.47 397.00 -10.80 -43.28 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.57 Total: 3.77 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.85 Total: -11.02 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.43 Total: -45.20 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.08 Total: -14.18 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.47 -10.80 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.231 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds