Wall clock time and date at job start Tue Mar 31 2020 16:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.53594 * 2 1 4 4 C 1.53053 * 109.55636 * 239.93451 * 2 1 3 5 5 N 1.46842 * 109.57279 * 180.94201 * 4 2 1 6 6 C 1.46898 * 110.99902 * 185.80442 * 5 4 2 7 7 C 1.50697 * 109.47352 * 169.74710 * 6 5 4 8 8 C 1.38238 * 119.99722 * 269.72830 * 7 6 5 9 9 C 1.38241 * 119.99530 * 179.78665 * 8 7 6 10 10 C 1.38230 * 120.00442 * 0.46565 * 9 8 7 11 11 C 1.38240 * 119.99477 * 359.76325 * 10 9 8 12 12 C 1.38230 * 120.00430 * 0.02956 * 11 10 9 13 13 C 1.46850 * 111.19875 * 61.71108 * 5 4 2 14 14 C 1.53039 * 109.52191 * 298.25426 * 13 5 4 15 15 C 1.53117 * 109.50427 * 120.10372 * 2 1 3 16 16 H 1.08996 * 109.52859 * 57.62538 * 15 2 1 17 17 N 1.46499 * 109.51944 * 297.49655 * 15 2 1 18 18 C 1.34784 * 119.99893 * 155.12875 * 17 15 2 19 19 O 1.21283 * 119.99649 * 0.02562 * 18 17 15 20 20 C 1.50697 * 119.99774 * 179.72962 * 18 17 15 21 21 C 1.50700 * 109.46617 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00295 * 359.97438 * 21 20 18 23 23 C 1.37888 * 119.99812 * 179.97438 * 21 20 18 24 24 N 1.31510 * 119.99839 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99999 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46620 * 90.00235 * 25 23 21 27 27 H 1.48494 * 109.47045 * 210.00014 * 25 23 21 28 28 H 1.48494 * 109.47337 * 330.00611 * 25 23 21 29 29 H 1.09001 * 109.47312 * 299.89717 * 1 2 3 30 30 H 1.09001 * 109.47509 * 59.90252 * 1 2 3 31 31 H 1.09002 * 109.46997 * 179.89730 * 1 2 3 32 32 H 1.08994 * 109.47270 * 180.09910 * 3 2 1 33 33 H 1.08997 * 109.47242 * 300.10313 * 3 2 1 34 34 H 1.09005 * 109.46833 * 60.09594 * 3 2 1 35 35 H 1.08997 * 109.46470 * 60.89556 * 4 2 1 36 36 H 1.09007 * 109.39739 * 300.95295 * 4 2 1 37 37 H 1.09004 * 109.47287 * 289.74585 * 6 5 4 38 38 H 1.09007 * 109.47112 * 49.74336 * 6 5 4 39 39 H 1.07997 * 120.00394 * 359.97438 * 8 7 6 40 40 H 1.08003 * 119.99356 * 180.25467 * 9 8 7 41 41 H 1.07992 * 119.99982 * 179.79193 * 10 9 8 42 42 H 1.08005 * 119.99453 * 180.02562 * 11 10 9 43 43 H 1.07999 * 119.99972 * 179.97438 * 12 11 10 44 44 H 1.08997 * 109.46439 * 178.23597 * 13 5 4 45 45 H 1.09001 * 109.46156 * 58.27069 * 13 5 4 46 46 H 1.08997 * 109.50590 * 299.23820 * 14 13 5 47 47 H 1.09003 * 109.50200 * 179.12045 * 14 13 5 48 48 H 0.97005 * 120.00261 * 335.13087 * 17 15 2 49 49 H 1.09001 * 109.46809 * 299.99238 * 20 18 17 50 50 H 1.08993 * 109.47525 * 59.99679 * 20 18 17 51 51 H 0.97001 * 120.00258 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0423 -0.7225 -1.2482 5 7 3.5106 -0.7425 -1.2372 6 6 4.0387 -1.3062 -2.4866 7 6 5.5277 -1.0823 -2.5489 8 6 6.0301 0.0660 -3.1319 9 6 7.3958 0.2735 -3.1851 10 6 8.2593 -0.6718 -2.6640 11 6 7.7570 -1.8223 -2.0853 12 6 6.3912 -2.0278 -2.0282 13 6 4.0230 -1.4743 -0.0717 14 6 3.5712 -0.7733 1.2115 15 6 2.0412 -0.7239 1.2486 16 1 1.6444 -1.7389 1.2695 17 7 1.6037 -0.0025 2.4463 18 6 1.4792 -0.6557 3.6186 19 8 1.7299 -1.8407 3.6821 20 6 1.0351 0.0877 4.8519 21 6 0.9779 -0.8642 6.0188 22 1 1.2368 -1.9036 5.8810 23 6 0.5950 -0.4081 7.2624 24 7 0.2801 0.8576 7.4303 25 14 0.5234 -1.5882 8.7087 26 1 1.8396 -1.6090 9.3961 27 1 -0.5251 -1.1415 9.6606 28 1 0.1990 -2.9521 8.2192 29 1 -0.3634 0.5122 0.8909 30 1 -0.3634 0.5153 -0.8891 31 1 -0.3633 -1.0277 -0.0018 32 1 3.1316 1.4407 -0.0018 33 1 1.6774 1.9567 -0.8890 34 1 1.6802 1.9556 0.8909 35 1 1.6929 -0.2007 -2.1390 36 1 1.6652 -1.7453 -1.2549 37 1 3.8305 -2.3757 -2.5193 38 1 3.5618 -0.8171 -3.3361 39 1 5.3556 0.8025 -3.5431 40 1 7.7881 1.1726 -3.6368 41 1 9.3263 -0.5112 -2.7086 42 1 8.4317 -2.5607 -1.6778 43 1 5.9989 -2.9269 -1.5765 44 1 5.1121 -1.4985 -0.1082 45 1 3.6366 -2.4934 -0.0842 46 1 3.9686 0.2414 1.2311 47 1 3.9386 -1.3255 2.0765 48 1 1.4036 0.9453 2.3956 49 1 1.7440 0.8865 5.0696 50 1 0.0469 0.5151 4.6824 51 1 0.0104 1.1785 8.3051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143204883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:03 Heat of formation + Delta-G solvation = -40.774476 kcal Electronic energy + Delta-G solvation = -28740.909784 eV Core-core repulsion = 25024.402993 eV Total energy + Delta-G solvation = -3716.506791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53953 -40.27726 -39.42777 -36.66232 -35.10386 -34.32786 -33.13774 -31.78084 -31.71155 -30.63927 -28.14189 -27.52781 -27.09105 -25.56816 -23.86684 -23.49491 -22.74225 -21.56423 -21.24005 -19.63357 -18.53112 -17.84926 -17.56456 -17.18005 -16.62933 -16.44681 -16.20260 -16.11267 -15.93664 -15.58664 -15.23179 -15.09044 -14.68263 -14.48721 -14.24939 -14.16390 -14.06618 -13.78008 -13.42756 -13.30357 -13.18003 -12.85989 -12.82726 -12.72901 -12.65589 -12.54844 -12.44294 -12.30614 -12.04795 -11.91214 -11.80204 -11.64612 -11.46358 -11.39808 -11.29900 -10.63571 -10.46499 -9.90209 -9.73534 -9.66026 -9.23460 -8.25947 -6.32988 0.46933 0.56575 1.38575 1.39536 1.52171 1.91927 2.33527 2.52474 2.73421 3.09191 3.18886 3.56118 3.76179 3.87125 3.90396 4.01612 4.16243 4.21033 4.25519 4.28099 4.33940 4.37601 4.42203 4.51756 4.61992 4.65662 4.67865 4.75388 4.79702 4.83615 4.86842 4.94196 4.95278 5.03755 5.06975 5.14967 5.16968 5.18358 5.22256 5.25953 5.28807 5.36818 5.59392 5.62296 5.64956 5.68383 5.74820 5.76399 6.05553 6.07210 6.09895 6.19783 6.72360 6.85451 7.33483 7.55307 8.86307 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002531 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.690096 B =11061.747680 C =11915.897528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.130 4.130 4 C 0.072 3.928 5 N -0.526 5.526 6 C 0.095 3.905 7 C -0.086 4.086 8 C -0.106 4.106 9 C -0.129 4.129 10 C -0.131 4.131 11 C -0.133 4.133 12 C -0.129 4.129 13 C 0.066 3.934 14 C -0.121 4.121 15 C 0.156 3.844 16 H 0.051 0.949 17 N -0.718 5.718 18 C 0.519 3.481 19 O -0.586 6.586 20 C 0.009 3.991 21 C -0.535 4.535 22 H 0.053 0.947 23 C 0.010 3.990 24 N -0.924 5.924 25 Si 0.964 3.036 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.275 1.275 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.031 0.969 37 H 0.042 0.958 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.025 0.975 46 H 0.077 0.923 47 H 0.040 0.960 48 H 0.407 0.593 49 H 0.039 0.961 50 H 0.040 0.960 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.021 1.416 -27.228 29.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.059 4.059 3 C -0.187 4.187 4 C -0.056 4.056 5 N -0.250 5.250 6 C -0.031 4.031 7 C -0.086 4.086 8 C -0.125 4.125 9 C -0.147 4.147 10 C -0.149 4.149 11 C -0.151 4.151 12 C -0.147 4.147 13 C -0.062 4.062 14 C -0.160 4.160 15 C 0.051 3.949 16 H 0.069 0.931 17 N -0.371 5.371 18 C 0.309 3.691 19 O -0.466 6.466 20 C -0.031 4.031 21 C -0.574 4.574 22 H 0.072 0.928 23 C -0.189 4.189 24 N -0.564 5.564 25 Si 0.788 3.212 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.200 1.200 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.136 0.864 44 H 0.100 0.900 45 H 0.044 0.956 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.244 0.756 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.273 1.183 -27.022 28.933 hybrid contribution -0.396 -1.119 1.288 1.752 sum 9.877 0.064 -25.733 27.564 Atomic orbital electron populations 1.21827 0.93396 1.01717 1.02793 1.20774 0.95772 0.96961 0.92390 1.21772 1.01969 0.93184 1.01797 1.22143 0.86536 0.98842 0.98058 1.61927 1.07943 1.53661 1.01511 1.21067 0.91152 0.98292 0.92621 1.19842 0.95072 0.95063 0.98621 1.21232 0.95735 0.96642 0.98880 1.21451 0.93545 0.99842 0.99891 1.21438 1.00775 0.94252 0.98399 1.21366 0.95407 0.98449 0.99915 1.21233 0.93940 0.99521 1.00021 1.21979 1.00500 0.94268 0.89484 1.21911 0.95565 1.01746 0.96788 1.20973 0.93872 0.95419 0.84644 0.93105 1.46137 1.69411 1.13447 1.08125 1.21418 0.74967 0.87311 0.85450 1.90501 1.51888 1.18059 1.86151 1.19059 0.97658 0.96222 0.90142 1.21359 1.45782 0.96095 0.94130 0.92844 1.25792 0.94602 0.97046 1.01457 1.70029 1.46447 1.15297 1.24641 0.85467 0.78309 0.78852 0.78539 1.19680 1.19724 1.20000 0.93102 0.89851 0.93643 0.91670 0.90698 0.93524 0.87696 0.95111 0.93964 0.88002 0.84750 0.84366 0.84614 0.85130 0.86400 0.89993 0.95635 0.90397 0.94153 0.75567 0.94267 0.94153 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.35 71.98 0.60 -2.25 16 2 C -0.06 -1.22 0.58 -52.13 -0.03 -1.25 16 3 C -0.13 -2.45 7.83 71.98 0.56 -1.89 16 4 C 0.07 1.27 4.18 86.33 0.36 1.63 16 5 N -0.53 -9.77 3.93 -900.89 -3.54 -13.31 16 6 C 0.10 1.46 5.12 85.56 0.44 1.90 16 7 C -0.09 -1.45 4.89 -19.87 -0.10 -1.54 16 8 C -0.11 -1.65 9.70 22.27 0.22 -1.43 16 9 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 10 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 11 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 12 C -0.13 -2.28 7.89 22.27 0.18 -2.10 16 13 C 0.07 1.55 5.16 86.33 0.45 2.00 16 14 C -0.12 -3.52 5.32 30.65 0.16 -3.35 16 15 C 0.16 4.66 1.63 45.07 0.07 4.73 16 16 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 17 N -0.72 -25.10 4.37 -442.15 -1.93 -27.03 16 18 C 0.52 24.52 7.79 87.65 0.68 25.21 16 19 O -0.59 -31.96 15.12 -3.04 -0.05 -32.00 16 20 C 0.01 0.46 5.46 29.10 0.16 0.62 16 21 C -0.54 -32.32 8.92 25.60 0.23 -32.09 16 22 H 0.05 3.40 6.75 -2.91 -0.02 3.38 16 23 C 0.01 0.56 5.46 84.66 0.46 1.02 16 24 N -0.92 -54.91 13.29 21.45 0.28 -54.62 16 25 Si 0.96 46.16 29.54 68.60 2.03 48.19 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 28 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 29 H 0.05 1.18 7.62 -2.39 -0.02 1.16 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.36 6.02 -2.39 -0.01 1.34 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 0.92 6.41 -2.38 -0.02 0.90 16 35 H 0.10 1.35 8.01 -2.39 -0.02 1.33 16 36 H 0.03 0.58 8.14 -2.38 -0.02 0.57 16 37 H 0.04 0.66 8.07 -2.38 -0.02 0.64 16 38 H 0.10 1.18 7.92 -2.38 -0.02 1.17 16 39 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.13 1.74 8.06 -2.91 -0.02 1.71 16 43 H 0.12 2.00 7.95 -2.91 -0.02 1.97 16 44 H 0.08 1.90 5.75 -2.39 -0.01 1.89 16 45 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.08 2.18 6.59 -2.39 -0.02 2.17 16 47 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.41 12.26 6.66 -92.70 -0.62 11.64 16 49 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -71.33 397.00 2.20 -69.13 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.29 Total: 23.80 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 5.11 Total: -14.16 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -5.19 Total: -94.96 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.05 Total: -32.00 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -71.33 2.20 -69.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.360 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds