Wall clock time and date at job start Tue Mar 31 2020 15:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31496 * 119.81722 * 2 1 4 4 C 1.32741 * 121.72803 * 180.31315 * 3 2 1 5 5 N 1.38369 * 119.42656 * 179.70958 * 4 3 2 6 6 C 1.46854 * 110.99933 * 359.73036 * 5 4 3 7 7 C 1.53164 * 109.44709 * 173.60697 * 6 5 4 8 8 C 1.52469 * 109.31353 * 58.17026 * 7 6 5 9 9 C 1.54279 * 110.09696 * 65.75893 * 8 7 6 10 10 C 1.55120 * 101.94537 * 98.25354 * 9 8 7 11 11 O 1.44437 * 103.56312 * 36.58785 * 10 9 8 12 12 C 1.43910 * 107.00226 * 320.28541 * 11 10 9 13 13 C 1.53000 * 109.90827 * 266.98622 * 12 11 10 14 14 C 1.52997 * 110.07354 * 145.80122 * 12 11 10 15 15 C 1.52461 * 110.63892 * 303.82234 * 8 7 6 16 16 C 1.46849 * 110.99930 * 235.35696 * 5 4 3 17 17 C 1.39701 * 121.13896 * 359.43385 * 4 3 2 18 18 C 1.36562 * 119.49682 * 0.27504 * 17 4 3 19 19 C 1.40752 * 119.81822 * 179.75394 * 2 1 3 20 20 C 1.41207 * 120.56715 * 359.97438 * 19 2 1 21 21 H 1.08002 * 119.99805 * 334.72888 * 20 19 2 22 22 C 1.39867 * 120.00075 * 154.72683 * 20 19 2 23 23 N 1.30904 * 119.99856 * 343.70159 * 22 20 19 24 24 Si 1.86799 * 120.00099 * 163.69809 * 22 20 19 25 25 H 1.48498 * 109.47228 * 60.00368 * 24 22 20 26 26 H 1.48499 * 109.47049 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47243 * 300.00361 * 24 22 20 28 28 H 1.08997 * 109.47077 * 270.25208 * 1 2 3 29 29 H 1.09002 * 109.46922 * 30.24888 * 1 2 3 30 30 H 1.08999 * 109.47387 * 150.24820 * 1 2 3 31 31 H 1.08997 * 109.47810 * 53.61543 * 6 5 4 32 32 H 1.09004 * 109.47312 * 293.59155 * 6 5 4 33 33 H 1.09007 * 109.49553 * 298.22492 * 7 6 5 34 34 H 1.08992 * 109.52373 * 178.14499 * 7 6 5 35 35 H 1.09003 * 110.93454 * 216.41440 * 9 8 7 36 36 H 1.08994 * 110.93651 * 340.09178 * 9 8 7 37 37 H 1.08993 * 110.60247 * 155.10607 * 10 9 8 38 38 H 1.08991 * 110.60328 * 278.07346 * 10 9 8 39 39 H 1.09001 * 109.46644 * 177.61992 * 13 12 11 40 40 H 1.08995 * 109.47185 * 297.62309 * 13 12 11 41 41 H 1.09002 * 109.47134 * 57.62810 * 13 12 11 42 42 H 1.09002 * 109.47515 * 302.28525 * 14 12 11 43 43 H 1.09005 * 109.46903 * 62.28252 * 14 12 11 44 44 H 1.08999 * 109.47670 * 182.27956 * 14 12 11 45 45 H 1.09002 * 109.49503 * 176.12297 * 15 8 7 46 46 H 1.09004 * 109.49517 * 296.21580 * 15 8 7 47 47 H 1.08998 * 109.47346 * 306.37785 * 16 5 4 48 48 H 1.09000 * 109.47569 * 66.39408 * 16 5 4 49 49 H 1.08003 * 120.25000 * 180.30297 * 17 4 3 50 50 H 1.07999 * 120.79383 * 179.97438 * 18 17 4 51 51 H 0.97001 * 119.99611 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1409 0.0000 4 6 3.4875 1.1852 -0.0062 5 7 4.1267 2.4123 -0.0120 6 6 3.1539 3.5124 -0.0166 7 6 3.8913 4.8459 0.1379 8 6 4.8978 5.0000 -0.9970 9 6 4.1603 5.1208 -2.3467 10 6 4.1498 6.6557 -2.5706 11 8 5.4276 7.0827 -2.0500 12 6 5.6719 6.3184 -0.8554 13 6 5.1701 7.0886 0.3677 14 6 7.1679 6.0314 -0.7124 15 6 5.8578 3.8161 -1.0284 16 6 5.0559 2.5163 -1.1444 17 6 4.2494 0.0142 -0.0012 18 6 3.6199 -1.1976 0.0046 19 6 2.2069 -1.2212 0.0052 20 6 1.5091 -2.4488 0.0111 21 1 0.5071 -2.4984 0.4110 22 6 2.1155 -3.6004 -0.5011 23 7 3.1744 -3.4984 -1.2640 24 14 1.4146 -5.2839 -0.0965 25 1 0.0149 -5.3679 -0.5855 26 1 2.2335 -6.3326 -0.7559 27 1 1.4383 -5.4896 1.3740 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8878 -0.5177 30 1 -0.3634 -0.8922 -0.5100 31 1 2.4568 3.3846 0.8116 32 1 2.6047 3.5079 -0.9581 33 1 4.4154 4.8633 1.0936 34 1 3.1737 5.6654 0.1016 35 1 4.7127 4.6154 -3.1389 36 1 3.1451 4.7312 -2.2721 37 1 4.0714 6.8879 -3.6327 38 1 3.3349 7.1189 -2.0144 39 1 5.3201 6.4857 1.2633 40 1 5.7242 8.0226 0.4613 41 1 4.1086 7.3061 0.2497 42 1 7.5220 5.4999 -1.5957 43 1 7.7103 6.9716 -0.6124 44 1 7.3374 5.4183 0.1728 45 1 6.5237 3.9104 -1.8862 46 1 6.4458 3.8001 -0.1107 47 1 5.7380 1.6663 -1.1340 48 1 4.4926 2.5190 -2.0776 49 1 5.3282 0.0670 -0.0014 50 1 4.1882 -2.1159 0.0081 51 1 3.5952 -4.2971 -1.6188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157805855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:49 Heat of formation + Delta-G solvation = -13.949160 kcal Electronic energy + Delta-G solvation = -29693.300279 eV Core-core repulsion = 25977.956721 eV Total energy + Delta-G solvation = -3715.343558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.14293 -39.04345 -37.10921 -34.50867 -33.55509 -32.51895 -31.49193 -31.00396 -30.18519 -28.31933 -27.52751 -26.83556 -25.18661 -24.00885 -22.74097 -22.66127 -21.12602 -20.12609 -19.95128 -18.06828 -17.29825 -16.75265 -16.26164 -15.77707 -15.39011 -15.04598 -14.86047 -14.49074 -14.17954 -13.76487 -13.68738 -13.27023 -13.21911 -13.08004 -12.90442 -12.61064 -12.52728 -12.32878 -12.03521 -11.96041 -11.73778 -11.65138 -11.53829 -11.32466 -11.28826 -11.09024 -11.02293 -10.99275 -10.89851 -10.73318 -10.63188 -10.36427 -10.10136 -9.95624 -9.81619 -9.61289 -9.39531 -8.55886 -8.22405 -8.03103 -7.05466 -6.79960 -4.38806 2.58310 2.92605 3.00605 3.02905 3.13635 3.78245 3.84279 4.30284 4.41907 4.59403 4.68212 4.70030 4.99049 5.05336 5.15244 5.18034 5.34981 5.36536 5.44470 5.52066 5.60499 5.61008 5.63948 5.71690 5.73966 5.76761 5.85857 5.87937 5.89224 5.99882 6.03738 6.07131 6.18548 6.23124 6.24463 6.31391 6.39004 6.42498 6.45748 6.56984 6.63457 6.70057 6.79073 6.94654 6.94755 7.06257 7.32527 7.35105 7.50243 7.79834 8.00856 8.19331 8.47329 8.68819 8.77560 9.59952 10.07024 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026950 B = 0.002775 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.710587 B =10087.061636 C =10468.665218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.016 3.984 3 N -0.492 5.492 4 C 0.170 3.830 5 N -0.464 5.464 6 C 0.075 3.925 7 C -0.106 4.106 8 C -0.078 4.078 9 C -0.149 4.149 10 C 0.048 3.952 11 O -0.372 6.372 12 C 0.107 3.893 13 C -0.163 4.163 14 C -0.144 4.144 15 C -0.100 4.100 16 C 0.059 3.941 17 C -0.154 4.154 18 C -0.115 4.115 19 C 0.057 3.943 20 C -0.447 4.447 21 H 0.083 0.917 22 C 0.074 3.926 23 N -0.795 5.795 24 Si 0.910 3.090 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.032 0.968 49 H 0.099 0.901 50 H 0.127 0.873 51 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 13.448 -0.486 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.125 4.125 3 N -0.205 5.205 4 C -0.061 4.061 5 N -0.184 5.184 6 C -0.053 4.053 7 C -0.143 4.143 8 C -0.079 4.079 9 C -0.187 4.187 10 C -0.029 4.029 11 O -0.292 6.292 12 C 0.068 3.932 13 C -0.220 4.220 14 C -0.201 4.201 15 C -0.138 4.138 16 C -0.068 4.068 17 C -0.176 4.176 18 C -0.142 4.142 19 C 0.053 3.947 20 C -0.477 4.477 21 H 0.101 0.899 22 C -0.144 4.144 23 N -0.420 5.420 24 Si 0.735 3.265 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.188 1.188 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.051 0.949 49 H 0.117 0.883 50 H 0.145 0.855 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.416 14.294 -0.293 14.964 hybrid contribution -0.316 -1.878 -0.537 1.979 sum 4.100 12.416 -0.830 13.102 Atomic orbital electron populations 1.20230 0.91258 1.01009 1.00197 1.20837 0.94826 0.87696 1.09134 1.66710 1.08267 1.31028 1.14494 1.18862 0.88303 0.88648 1.10259 1.59217 1.18231 1.00851 1.40117 1.21818 0.93283 0.88570 1.01641 1.21765 0.97373 0.97292 0.97913 1.21490 0.95890 0.94761 0.95714 1.23276 1.01904 0.96407 0.97094 1.23511 0.86425 0.93734 0.99218 1.88897 1.36949 1.62520 1.40837 1.22028 0.95693 0.89764 0.85714 1.22327 1.01548 1.00384 0.97791 1.21994 0.93701 1.01761 1.02647 1.21707 0.96983 0.92765 1.02340 1.22231 0.95283 0.97603 0.91692 1.20830 0.98349 0.92619 1.05794 1.21306 0.94828 0.96374 1.01647 1.18256 0.92314 0.93087 0.91058 1.19454 1.01674 0.91903 1.34683 0.89897 1.25945 0.94307 1.01585 0.92575 1.69813 1.17866 1.31908 1.22440 0.86322 0.79865 0.80386 0.79963 1.18878 1.20312 1.18757 0.93494 0.93526 0.91453 0.90189 0.94459 0.90845 0.91623 0.90583 0.89859 0.89393 0.92466 0.91060 0.92518 0.92140 0.91649 0.92533 0.90839 0.91326 0.90646 0.90541 0.94946 0.88296 0.85538 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 9.58 36.01 0.34 -1.09 16 2 C 0.02 0.40 6.86 -81.79 -0.56 -0.16 16 3 N -0.49 -11.67 8.53 -8.05 -0.07 -11.74 16 4 C 0.17 3.82 6.41 -155.13 -0.99 2.83 16 5 N -0.46 -8.62 4.64 -173.00 -0.80 -9.42 16 6 C 0.07 1.25 4.46 -3.76 -0.02 1.23 16 7 C -0.11 -1.36 3.65 -26.92 -0.10 -1.46 16 8 C -0.08 -0.94 0.63 -154.11 -0.10 -1.04 16 9 C -0.15 -1.78 5.14 -24.94 -0.13 -1.91 16 10 C 0.05 0.52 7.68 38.28 0.29 0.81 16 11 O -0.37 -4.70 10.88 -35.23 -0.38 -5.08 16 12 C 0.11 1.21 1.19 -90.34 -0.11 1.10 16 13 C -0.16 -1.66 7.66 37.16 0.28 -1.37 16 14 C -0.14 -1.46 7.71 37.16 0.29 -1.18 16 15 C -0.10 -1.27 3.57 -26.92 -0.10 -1.37 16 16 C 0.06 0.95 5.07 -3.77 -0.02 0.94 16 17 C -0.15 -3.55 9.09 -39.64 -0.36 -3.91 16 18 C -0.12 -2.91 8.73 -39.02 -0.34 -3.25 16 19 C 0.06 1.48 5.58 -106.65 -0.59 0.89 16 20 C -0.45 -11.24 8.14 -37.85 -0.31 -11.55 16 21 H 0.08 1.98 6.86 -52.49 -0.36 1.62 16 22 C 0.07 1.77 5.19 -17.34 -0.09 1.68 16 23 N -0.79 -19.70 10.95 55.54 0.61 -19.09 16 24 Si 0.91 17.92 29.59 -169.99 -5.03 12.89 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 27 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.38 6.76 -51.93 -0.35 1.03 16 31 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 32 H 0.04 0.66 6.48 -51.93 -0.34 0.33 16 33 H 0.07 0.94 6.73 -51.92 -0.35 0.59 16 34 H 0.07 0.77 6.80 -51.93 -0.35 0.41 16 35 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 36 H 0.08 1.06 6.22 -51.93 -0.32 0.74 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.69 6.71 -51.93 -0.35 0.34 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.61 6.81 -51.93 -0.35 0.26 16 42 H 0.06 0.67 6.74 -51.93 -0.35 0.32 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.69 6.81 -51.93 -0.35 0.34 16 45 H 0.07 0.80 6.83 -51.93 -0.35 0.44 16 46 H 0.07 0.93 6.65 -51.93 -0.35 0.59 16 47 H 0.08 1.26 6.61 -51.93 -0.34 0.92 16 48 H 0.03 0.56 7.45 -51.93 -0.39 0.17 16 49 H 0.10 2.07 7.10 -52.48 -0.37 1.70 16 50 H 0.13 3.25 6.26 -52.49 -0.33 2.93 16 51 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 LS Contribution 372.60 15.07 5.61 5.61 Total: -1.00 -27.22 372.60 -10.74 -37.96 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.08 Total: 7.69 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.60 Total: -18.82 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: -0.26 Total: -40.25 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.38 Total: -5.08 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.22 -10.74 -37.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157805855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.016 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds