Wall clock time and date at job start Tue Mar 31 2020 15:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31496 * 119.81722 * 2 1 4 4 C 1.32741 * 121.72803 * 180.31315 * 3 2 1 5 5 N 1.38369 * 119.42656 * 179.70958 * 4 3 2 6 6 C 1.46854 * 110.99933 * 359.73036 * 5 4 3 7 7 C 1.53164 * 109.44709 * 173.60697 * 6 5 4 8 8 C 1.52469 * 109.31353 * 58.17026 * 7 6 5 9 9 C 1.54279 * 110.09696 * 65.75893 * 8 7 6 10 10 C 1.55120 * 101.94537 * 98.25354 * 9 8 7 11 11 O 1.44437 * 103.56312 * 36.58785 * 10 9 8 12 12 C 1.43910 * 107.00226 * 320.28541 * 11 10 9 13 13 C 1.53000 * 109.90827 * 266.98622 * 12 11 10 14 14 C 1.52997 * 110.07354 * 145.80122 * 12 11 10 15 15 C 1.52461 * 110.63892 * 303.82234 * 8 7 6 16 16 C 1.46849 * 110.99930 * 235.35696 * 5 4 3 17 17 C 1.39701 * 121.13896 * 359.43385 * 4 3 2 18 18 C 1.36562 * 119.49682 * 0.27504 * 17 4 3 19 19 C 1.40752 * 119.81822 * 179.75394 * 2 1 3 20 20 C 1.41207 * 120.56715 * 359.97438 * 19 2 1 21 21 H 1.08002 * 119.99805 * 334.72888 * 20 19 2 22 22 C 1.39867 * 120.00075 * 154.72683 * 20 19 2 23 23 N 1.30904 * 119.99856 * 343.70159 * 22 20 19 24 24 Si 1.86799 * 120.00099 * 163.69809 * 22 20 19 25 25 H 1.48498 * 109.47228 * 60.00368 * 24 22 20 26 26 H 1.48499 * 109.47049 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47243 * 300.00361 * 24 22 20 28 28 H 1.08997 * 109.47077 * 270.25208 * 1 2 3 29 29 H 1.09002 * 109.46922 * 30.24888 * 1 2 3 30 30 H 1.08999 * 109.47387 * 150.24820 * 1 2 3 31 31 H 1.08997 * 109.47810 * 53.61543 * 6 5 4 32 32 H 1.09004 * 109.47312 * 293.59155 * 6 5 4 33 33 H 1.09007 * 109.49553 * 298.22492 * 7 6 5 34 34 H 1.08992 * 109.52373 * 178.14499 * 7 6 5 35 35 H 1.09003 * 110.93454 * 216.41440 * 9 8 7 36 36 H 1.08994 * 110.93651 * 340.09178 * 9 8 7 37 37 H 1.08993 * 110.60247 * 155.10607 * 10 9 8 38 38 H 1.08991 * 110.60328 * 278.07346 * 10 9 8 39 39 H 1.09001 * 109.46644 * 177.61992 * 13 12 11 40 40 H 1.08995 * 109.47185 * 297.62309 * 13 12 11 41 41 H 1.09002 * 109.47134 * 57.62810 * 13 12 11 42 42 H 1.09002 * 109.47515 * 302.28525 * 14 12 11 43 43 H 1.09005 * 109.46903 * 62.28252 * 14 12 11 44 44 H 1.08999 * 109.47670 * 182.27956 * 14 12 11 45 45 H 1.09002 * 109.49503 * 176.12297 * 15 8 7 46 46 H 1.09004 * 109.49517 * 296.21580 * 15 8 7 47 47 H 1.08998 * 109.47346 * 306.37785 * 16 5 4 48 48 H 1.09000 * 109.47569 * 66.39408 * 16 5 4 49 49 H 1.08003 * 120.25000 * 180.30297 * 17 4 3 50 50 H 1.07999 * 120.79383 * 179.97438 * 18 17 4 51 51 H 0.97001 * 119.99611 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1409 0.0000 4 6 3.4875 1.1852 -0.0062 5 7 4.1267 2.4123 -0.0120 6 6 3.1539 3.5124 -0.0166 7 6 3.8913 4.8459 0.1379 8 6 4.8978 5.0000 -0.9970 9 6 4.1603 5.1208 -2.3467 10 6 4.1498 6.6557 -2.5706 11 8 5.4276 7.0827 -2.0500 12 6 5.6719 6.3184 -0.8554 13 6 5.1701 7.0886 0.3677 14 6 7.1679 6.0314 -0.7124 15 6 5.8578 3.8161 -1.0284 16 6 5.0559 2.5163 -1.1444 17 6 4.2494 0.0142 -0.0012 18 6 3.6199 -1.1976 0.0046 19 6 2.2069 -1.2212 0.0052 20 6 1.5091 -2.4488 0.0111 21 1 0.5071 -2.4984 0.4110 22 6 2.1155 -3.6004 -0.5011 23 7 3.1744 -3.4984 -1.2640 24 14 1.4146 -5.2839 -0.0965 25 1 0.0149 -5.3679 -0.5855 26 1 2.2335 -6.3326 -0.7559 27 1 1.4383 -5.4896 1.3740 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8878 -0.5177 30 1 -0.3634 -0.8922 -0.5100 31 1 2.4568 3.3846 0.8116 32 1 2.6047 3.5079 -0.9581 33 1 4.4154 4.8633 1.0936 34 1 3.1737 5.6654 0.1016 35 1 4.7127 4.6154 -3.1389 36 1 3.1451 4.7312 -2.2721 37 1 4.0714 6.8879 -3.6327 38 1 3.3349 7.1189 -2.0144 39 1 5.3201 6.4857 1.2633 40 1 5.7242 8.0226 0.4613 41 1 4.1086 7.3061 0.2497 42 1 7.5220 5.4999 -1.5957 43 1 7.7103 6.9716 -0.6124 44 1 7.3374 5.4183 0.1728 45 1 6.5237 3.9104 -1.8862 46 1 6.4458 3.8001 -0.1107 47 1 5.7380 1.6663 -1.1340 48 1 4.4926 2.5190 -2.0776 49 1 5.3282 0.0670 -0.0014 50 1 4.1882 -2.1159 0.0081 51 1 3.5952 -4.2971 -1.6188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157805855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:48 Heat of formation + Delta-G solvation = -27.376916 kcal Electronic energy + Delta-G solvation = -29693.882550 eV Core-core repulsion = 25977.956721 eV Total energy + Delta-G solvation = -3715.925829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.19863 -40.68113 -38.52644 -36.02238 -34.98789 -33.62605 -33.05307 -32.33018 -31.81058 -29.48216 -28.82525 -28.22239 -26.59711 -25.33031 -24.05233 -23.86620 -22.66325 -21.77826 -21.16930 -19.24873 -19.05596 -18.11400 -17.32360 -17.14851 -16.72923 -16.57228 -16.01587 -15.80838 -15.61258 -15.14239 -14.94293 -14.63790 -14.49186 -14.34006 -14.12624 -13.95258 -13.71306 -13.61358 -13.37810 -13.32983 -13.17864 -13.06996 -12.84969 -12.74527 -12.65027 -12.42899 -12.35629 -12.24977 -12.20226 -11.94886 -11.83223 -11.64362 -11.37668 -11.19149 -11.14978 -11.02606 -10.51037 -10.27214 -10.05011 -9.86672 -8.83822 -8.58302 -6.27109 0.77321 1.05687 1.39731 1.49859 1.53432 2.19666 2.65835 2.91613 3.02664 3.44390 3.59623 3.68287 3.74057 3.96640 4.09486 4.12138 4.20981 4.25092 4.26989 4.36782 4.50443 4.55396 4.56844 4.61352 4.63729 4.68603 4.72284 4.79174 4.81026 4.86946 4.90897 4.95521 4.97730 4.99123 5.00160 5.02969 5.11280 5.14225 5.16390 5.20092 5.21372 5.28329 5.32313 5.44111 5.48240 5.51891 5.58885 5.83679 5.94589 6.07435 6.27255 6.37948 6.64795 6.82900 6.93409 7.74286 8.29794 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026950 B = 0.002775 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.710587 B =10087.061636 C =10468.665218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.002 4.002 3 N -0.502 5.502 4 C 0.172 3.828 5 N -0.465 5.465 6 C 0.080 3.920 7 C -0.094 4.094 8 C -0.076 4.076 9 C -0.150 4.150 10 C 0.050 3.950 11 O -0.387 6.387 12 C 0.108 3.892 13 C -0.163 4.163 14 C -0.145 4.145 15 C -0.091 4.091 16 C 0.061 3.939 17 C -0.161 4.161 18 C -0.134 4.134 19 C 0.026 3.974 20 C -0.475 4.475 21 H 0.087 0.913 22 C 0.034 3.966 23 N -0.827 5.827 24 Si 0.982 3.018 25 H -0.257 1.257 26 H -0.271 1.271 27 H -0.261 1.261 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.024 0.976 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.019 0.981 49 H 0.117 0.883 50 H 0.114 0.886 51 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 14.630 -0.229 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.143 4.143 3 N -0.215 5.215 4 C -0.059 4.059 5 N -0.185 5.185 6 C -0.048 4.048 7 C -0.132 4.132 8 C -0.077 4.077 9 C -0.188 4.188 10 C -0.027 4.027 11 O -0.307 6.307 12 C 0.069 3.931 13 C -0.220 4.220 14 C -0.202 4.202 15 C -0.129 4.129 16 C -0.066 4.066 17 C -0.184 4.184 18 C -0.160 4.160 19 C 0.022 3.978 20 C -0.504 4.504 21 H 0.105 0.895 22 C -0.181 4.181 23 N -0.453 5.453 24 Si 0.803 3.197 25 H -0.181 1.181 26 H -0.195 1.195 27 H -0.185 1.185 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.037 0.963 49 H 0.135 0.865 50 H 0.132 0.868 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.756 15.504 -0.040 16.217 hybrid contribution -0.366 -2.131 -0.639 2.254 sum 4.390 13.373 -0.680 14.092 Atomic orbital electron populations 1.20204 0.89077 1.01458 1.01185 1.21393 0.96598 0.87583 1.08726 1.66844 1.08837 1.30735 1.15093 1.19310 0.88204 0.90164 1.08223 1.59215 1.18360 0.99781 1.41109 1.21805 0.93079 0.89813 1.00084 1.21700 0.97646 0.95217 0.98607 1.21461 0.95630 0.95215 0.95357 1.23245 1.01145 0.97403 0.96981 1.23584 0.86207 0.92651 1.00228 1.88891 1.37607 1.62807 1.41355 1.22080 0.96228 0.88963 0.85868 1.22323 1.01629 1.00636 0.97390 1.22017 0.92902 1.02290 1.02972 1.21685 0.96769 0.90894 1.03516 1.22273 0.94661 0.99584 0.90034 1.21024 0.99375 0.92347 1.05610 1.21322 0.95057 0.96689 1.02949 1.18602 0.92832 0.94152 0.92237 1.19692 1.02248 0.92610 1.35882 0.89455 1.26780 0.94459 1.05024 0.91791 1.69870 1.19045 1.33230 1.23130 0.85235 0.79333 0.75509 0.79613 1.18110 1.19513 1.18534 0.92127 0.92380 0.91550 0.92144 0.95803 0.90197 0.89980 0.90938 0.90985 0.88099 0.91587 0.90412 0.91928 0.92094 0.91817 0.91921 0.89968 0.89783 0.89733 0.91105 0.96311 0.86511 0.86784 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.57 9.58 71.24 0.68 -1.89 16 2 C 0.00 -0.11 6.86 43.22 0.30 0.19 16 3 N -0.50 -24.19 8.53 -179.37 -1.53 -25.71 16 4 C 0.17 7.86 6.41 133.31 0.85 8.71 16 5 N -0.46 -17.11 4.64 -701.24 -3.26 -20.36 16 6 C 0.08 2.62 4.46 86.37 0.38 3.01 16 7 C -0.09 -2.25 3.65 30.47 0.11 -2.14 16 8 C -0.08 -1.68 0.63 -51.92 -0.03 -1.71 16 9 C -0.15 -3.37 5.14 31.75 0.16 -3.21 16 10 C 0.05 0.97 7.68 72.71 0.56 1.53 16 11 O -0.39 -8.77 10.88 -148.98 -1.62 -10.39 16 12 C 0.11 2.13 1.19 -10.61 -0.01 2.12 16 13 C -0.16 -2.83 7.66 71.98 0.55 -2.28 16 14 C -0.14 -2.53 7.71 71.98 0.56 -1.98 16 15 C -0.09 -2.14 3.57 30.47 0.11 -2.03 16 16 C 0.06 1.94 5.07 86.37 0.44 2.38 16 17 C -0.16 -7.63 9.09 22.23 0.20 -7.43 16 18 C -0.13 -7.00 8.73 22.64 0.20 -6.80 16 19 C 0.03 1.40 5.58 -21.18 -0.12 1.28 16 20 C -0.47 -24.40 8.14 23.39 0.19 -24.21 16 21 H 0.09 4.24 6.86 -2.91 -0.02 4.22 16 22 C 0.03 1.67 5.19 85.23 0.44 2.11 16 23 N -0.83 -41.90 10.95 21.82 0.24 -41.66 16 24 Si 0.98 36.73 29.59 68.60 2.03 38.76 16 25 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 26 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 27 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.74 6.76 -2.39 -0.02 2.72 16 31 H 0.06 2.22 7.66 -2.39 -0.02 2.20 16 32 H 0.02 0.85 6.48 -2.39 -0.02 0.83 16 33 H 0.08 1.85 6.73 -2.38 -0.02 1.83 16 34 H 0.08 1.73 6.80 -2.39 -0.02 1.71 16 35 H 0.07 1.67 7.75 -2.39 -0.02 1.65 16 36 H 0.07 1.78 6.22 -2.39 -0.01 1.77 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.25 6.71 -2.39 -0.02 1.24 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.05 6.81 -2.39 -0.02 1.03 16 42 H 0.06 1.13 6.74 -2.39 -0.02 1.11 16 43 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.08 1.29 6.81 -2.39 -0.02 1.27 16 45 H 0.08 1.76 6.83 -2.39 -0.02 1.74 16 46 H 0.08 1.87 6.65 -2.39 -0.02 1.85 16 47 H 0.07 2.31 6.61 -2.39 -0.02 2.29 16 48 H 0.02 0.64 7.45 -2.39 -0.02 0.63 16 49 H 0.12 4.94 7.10 -2.91 -0.02 4.92 16 50 H 0.11 6.14 6.26 -2.91 -0.02 6.12 16 51 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 Total: -1.00 -59.42 372.60 2.36 -57.06 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.93 Total: 34.65 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 5.57 Total: -32.33 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -4.55 Total: -87.74 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.62 Total: -10.39 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -59.42 2.36 -57.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157805855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.679 kcal (2) G-P(sol) polarization free energy of solvation -59.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds