Wall clock time and date at job start Tue Mar 31 2020 15:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38686 * 119.27362 * 2 1 4 4 C 1.38007 * 119.62669 * 179.97438 * 3 2 1 5 5 C 1.41005 * 118.28041 * 359.74503 * 4 3 2 6 6 C 1.41020 * 120.70696 * 180.24326 * 5 4 3 7 7 H 1.08001 * 120.00108 * 207.52766 * 6 5 4 8 8 C 1.39948 * 119.99565 * 27.53742 * 6 5 4 9 9 N 1.30864 * 120.00299 * 13.47729 * 8 6 5 10 10 Si 1.86803 * 119.99701 * 193.47577 * 8 6 5 11 11 H 1.48500 * 109.47196 * 59.99959 * 10 8 6 12 12 H 1.48503 * 109.47264 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47145 * 300.00114 * 10 8 6 14 14 C 1.41709 * 118.58875 * 0.49257 * 5 4 3 15 15 N 1.38085 * 119.90435 * 179.77429 * 14 5 4 16 16 C 1.46854 * 111.00345 * 236.52213 * 15 14 5 17 17 C 1.53155 * 109.45178 * 173.60817 * 16 15 14 18 18 C 1.52467 * 109.31180 * 58.17960 * 17 16 15 19 19 C 1.54275 * 110.10197 * 65.75665 * 18 17 16 20 20 C 1.55115 * 101.94247 * 98.25256 * 19 18 17 21 21 O 1.44436 * 103.56358 * 36.59197 * 20 19 18 22 22 C 1.43897 * 107.00154 * 320.28241 * 21 20 19 23 23 C 1.53006 * 109.90944 * 266.98882 * 22 21 20 24 24 C 1.53003 * 110.07238 * 145.80313 * 22 21 20 25 25 C 1.52465 * 110.63805 * 303.81560 * 18 17 16 26 26 C 1.46856 * 110.99761 * 112.15661 * 15 14 5 27 27 N 1.31965 * 119.27967 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47220 * 270.02482 * 1 2 3 29 29 H 1.08995 * 109.47006 * 30.02613 * 1 2 3 30 30 H 1.09003 * 109.46619 * 150.02204 * 1 2 3 31 31 H 1.07997 * 120.18909 * 359.94937 * 3 2 1 32 32 H 1.08001 * 120.86176 * 180.02562 * 4 3 2 33 33 H 0.97000 * 120.00174 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.46894 * 53.61715 * 16 15 14 35 35 H 1.08995 * 109.48202 * 293.60591 * 16 15 14 36 36 H 1.09001 * 109.49666 * 298.23198 * 17 16 15 37 37 H 1.08997 * 109.52904 * 178.14954 * 17 16 15 38 38 H 1.08994 * 110.93896 * 216.41666 * 19 18 17 39 39 H 1.09002 * 110.93012 * 340.09578 * 19 18 17 40 40 H 1.09004 * 110.59844 * 155.10970 * 20 19 18 41 41 H 1.08999 * 110.60610 * 278.06815 * 20 19 18 42 42 H 1.09001 * 109.47086 * 177.62272 * 23 22 21 43 43 H 1.09007 * 109.46987 * 297.62097 * 23 22 21 44 44 H 1.09000 * 109.47322 * 57.62504 * 23 22 21 45 45 H 1.08992 * 109.47375 * 302.28262 * 24 22 21 46 46 H 1.09001 * 109.46902 * 62.28085 * 24 22 21 47 47 H 1.09003 * 109.47104 * 182.27576 * 24 22 21 48 48 H 1.08998 * 109.49157 * 176.12144 * 25 18 17 49 49 H 1.08996 * 109.49757 * 296.22092 * 25 18 17 50 50 H 1.09000 * 109.47679 * 306.37486 * 26 15 14 51 51 H 1.09001 * 109.47630 * 66.39115 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2098 0.0000 4 6 3.5652 1.2183 0.0005 5 6 4.2409 -0.0193 0.0066 6 6 5.6502 -0.0703 0.0126 7 1 6.1616 -0.9199 -0.4154 8 6 6.3859 0.9798 0.5732 9 7 5.7873 1.8729 1.3193 10 14 8.2225 1.1068 0.2565 11 1 8.4654 1.2375 -1.2027 12 1 8.7644 2.2990 0.9567 13 1 8.8978 -0.1149 0.7632 14 6 3.4738 -1.2108 0.0011 15 7 4.1075 -2.4376 0.0021 16 6 3.6825 -3.2506 -1.1447 17 6 4.5195 -4.5320 -1.1996 18 6 4.3528 -5.2995 0.1073 19 6 2.8984 -5.7941 0.2499 20 6 3.0106 -7.2642 -0.2318 21 8 4.2988 -7.6866 0.2666 22 6 5.2010 -6.5792 0.0926 23 6 5.9295 -6.7062 -1.2469 24 6 6.2165 -6.5445 1.2365 25 6 4.7273 -4.4226 1.2970 26 6 3.8837 -3.1445 1.2698 27 7 2.1524 -1.1511 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6364 2.1399 -0.0008 32 1 4.1135 2.1487 0.0010 33 1 6.2972 2.6010 1.7076 34 1 3.8252 -2.6836 -2.0647 35 1 2.6291 -3.5089 -1.0367 36 1 5.5695 -4.2750 -1.3391 37 1 4.1830 -5.1516 -2.0308 38 1 2.5716 -5.7485 1.2887 39 1 2.2283 -5.2236 -0.3932 40 1 2.2146 -7.8710 0.1998 41 1 2.9853 -7.3142 -1.3203 42 1 6.5791 -5.8428 -1.3904 43 1 6.5292 -7.6165 -1.2495 44 1 5.1993 -6.7497 -2.0550 45 1 5.6897 -6.4735 2.1880 46 1 6.8144 -7.4557 1.2194 47 1 6.8690 -5.6795 1.1170 48 1 4.5363 -4.9650 2.2229 49 1 5.7841 -4.1623 1.2386 50 1 4.1724 -2.5008 2.1007 51 1 2.8288 -3.4035 1.3602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157806423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:52 Heat of formation + Delta-G solvation = -15.493314 kcal Electronic energy + Delta-G solvation = -30354.264993 eV Core-core repulsion = 26638.854476 eV Total energy + Delta-G solvation = -3715.410518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.96966 -38.87712 -36.86149 -34.20581 -33.92165 -32.39666 -30.93546 -30.90526 -30.04162 -28.09369 -27.57136 -27.28358 -24.76644 -23.80346 -22.66419 -22.27536 -21.09738 -20.49789 -19.80933 -17.84312 -17.27126 -16.52498 -16.11375 -15.56052 -15.44165 -14.87192 -14.59719 -14.51074 -13.96636 -13.81668 -13.62014 -13.28672 -12.97718 -12.95095 -12.86335 -12.55147 -12.38538 -12.19278 -12.05413 -11.87928 -11.72422 -11.51730 -11.41168 -11.30368 -11.20719 -11.14034 -10.92564 -10.89295 -10.86685 -10.54276 -10.49859 -10.20545 -9.97857 -9.88024 -9.71615 -9.47637 -9.33102 -8.38438 -8.10901 -7.47225 -7.33697 -6.79934 -4.39042 2.57665 2.89275 3.03367 3.06646 3.18723 3.88134 3.90665 4.50938 4.57438 4.75667 4.76008 4.84214 5.11400 5.18727 5.28817 5.35800 5.44741 5.52758 5.55836 5.62628 5.73467 5.77009 5.79617 5.83355 5.88663 5.92020 5.99392 6.02573 6.04853 6.07094 6.16666 6.18242 6.20929 6.31424 6.37401 6.38056 6.43531 6.46663 6.49455 6.54932 6.62370 6.71559 6.89259 6.97774 7.06888 7.11496 7.18089 7.61512 7.71315 7.91077 8.01515 8.31706 8.61844 8.71440 8.95326 9.59627 10.09798 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.004669 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.268208 B = 5996.135675 C = 7873.761965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.009 4.009 3 C -0.147 4.147 4 C -0.133 4.133 5 C 0.092 3.908 6 C -0.415 4.415 7 H 0.091 0.909 8 C 0.069 3.931 9 N -0.796 5.796 10 Si 0.912 3.088 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.263 1.263 14 C 0.158 3.842 15 N -0.448 5.448 16 C 0.065 3.935 17 C -0.102 4.102 18 C -0.075 4.075 19 C -0.147 4.147 20 C 0.047 3.953 21 O -0.373 6.373 22 C 0.107 3.893 23 C -0.163 4.163 24 C -0.144 4.144 25 C -0.100 4.100 26 C 0.070 3.930 27 N -0.488 5.488 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.282 0.718 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 -10.789 -2.112 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.149 4.149 3 C -0.167 4.167 4 C -0.159 4.159 5 C 0.086 3.914 6 C -0.445 4.445 7 H 0.109 0.891 8 C -0.149 4.149 9 N -0.421 5.421 10 Si 0.737 3.263 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.188 1.188 14 C -0.074 4.074 15 N -0.170 5.170 16 C -0.063 4.063 17 C -0.139 4.139 18 C -0.076 4.076 19 C -0.184 4.184 20 C -0.029 4.029 21 O -0.293 6.293 22 C 0.068 3.932 23 C -0.220 4.220 24 C -0.201 4.201 25 C -0.138 4.138 26 C -0.058 4.058 27 N -0.200 5.200 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.590 -11.462 -1.912 11.635 hybrid contribution 0.299 1.109 -0.016 1.149 sum -0.291 -10.353 -1.928 10.535 Atomic orbital electron populations 1.20263 0.91967 1.00543 1.00214 1.19991 0.94390 0.88358 1.12145 1.21420 0.95394 0.96884 1.03023 1.21639 0.92313 0.98782 1.03200 1.18092 0.94174 0.89759 0.89357 1.19493 0.90881 1.03213 1.30910 0.89077 1.26050 1.01449 0.94413 0.92948 1.69799 1.38723 1.11261 1.22311 0.86287 0.81707 0.78581 0.79733 1.18818 1.20476 1.18785 1.19353 0.86195 0.89982 1.11855 1.59329 1.55164 1.01047 1.01473 1.22037 0.96655 0.93104 0.94493 1.21686 1.01550 0.95470 0.95228 1.21454 0.94218 0.94583 0.97320 1.23249 0.96971 0.95704 1.02508 1.23508 0.86146 0.95053 0.98222 1.88886 1.19974 1.36903 1.83536 1.22038 0.90406 0.85490 0.95277 1.22329 1.00673 1.02155 0.96873 1.21993 0.98184 1.02043 0.97865 1.21708 1.01212 0.94857 0.96025 1.21991 0.97192 0.93963 0.92654 1.66760 1.11250 1.30220 1.11770 0.93455 0.93072 0.92973 0.88563 0.85565 0.90711 0.91697 0.94485 0.90634 0.91998 0.90672 0.89905 0.89556 0.92617 0.90945 0.92633 0.92241 0.91684 0.92686 0.90684 0.91793 0.90582 0.91272 0.94969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.01 0.37 -0.94 16 2 C -0.01 -0.19 6.79 -82.37 -0.56 -0.75 16 3 C -0.15 -3.37 9.69 -39.50 -0.38 -3.76 16 4 C -0.13 -3.34 8.77 -38.62 -0.34 -3.68 16 5 C 0.09 2.36 5.58 -106.47 -0.59 1.77 16 6 C -0.42 -10.43 8.68 -37.89 -0.33 -10.76 16 7 H 0.09 2.25 7.63 -52.49 -0.40 1.85 16 8 C 0.07 1.65 5.23 -17.32 -0.09 1.56 16 9 N -0.80 -19.66 10.95 55.55 0.61 -19.05 16 10 Si 0.91 18.05 29.58 -169.99 -5.03 13.02 16 11 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 12 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 13 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 14 C 0.16 3.78 5.31 -155.03 -0.82 2.96 16 15 N -0.45 -9.24 3.84 -172.54 -0.66 -9.91 16 16 C 0.06 1.16 5.00 -3.77 -0.02 1.15 16 17 C -0.10 -1.46 3.65 -26.92 -0.10 -1.56 16 18 C -0.08 -1.03 0.63 -154.11 -0.10 -1.12 16 19 C -0.15 -1.92 5.14 -24.95 -0.13 -2.05 16 20 C 0.05 0.56 7.68 38.28 0.29 0.85 16 21 O -0.37 -5.13 10.88 -35.23 -0.38 -5.51 16 22 C 0.11 1.36 1.19 -90.34 -0.11 1.25 16 23 C -0.16 -1.88 7.66 37.16 0.28 -1.59 16 24 C -0.14 -1.71 7.71 37.16 0.29 -1.42 16 25 C -0.10 -1.51 3.57 -26.92 -0.10 -1.61 16 26 C 0.07 1.31 5.14 -3.76 -0.02 1.29 16 27 N -0.49 -11.52 9.62 -8.11 -0.08 -11.60 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.13 3.23 6.33 -52.49 -0.33 2.90 16 33 H 0.28 6.39 8.30 -40.82 -0.34 6.06 16 34 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.04 0.69 6.33 -51.93 -0.33 0.36 16 36 H 0.08 1.11 6.73 -51.93 -0.35 0.76 16 37 H 0.06 0.79 6.80 -51.93 -0.35 0.44 16 38 H 0.07 1.01 7.75 -51.93 -0.40 0.60 16 39 H 0.08 1.14 6.22 -51.93 -0.32 0.81 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.81 6.71 -51.93 -0.35 0.46 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.67 6.81 -51.93 -0.35 0.31 16 45 H 0.06 0.78 6.73 -51.93 -0.35 0.43 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.87 6.81 -51.93 -0.35 0.51 16 48 H 0.06 0.89 6.83 -51.93 -0.35 0.53 16 49 H 0.08 1.17 6.65 -51.93 -0.35 0.82 16 50 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 51 H 0.03 0.62 7.42 -51.93 -0.39 0.24 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -26.95 378.99 -10.62 -37.57 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.33 Total: 8.18 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.45 Total: -18.41 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.13 Total: -40.56 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.38 Total: -5.51 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -26.95 -10.62 -37.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157806423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.073 kcal (2) G-P(sol) polarization free energy of solvation -26.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds