Wall clock time and date at job start Tue Mar 31 2020 15:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38686 * 119.27362 * 2 1 4 4 C 1.38007 * 119.62669 * 179.97438 * 3 2 1 5 5 C 1.41005 * 118.28041 * 359.74503 * 4 3 2 6 6 C 1.41020 * 120.70696 * 180.24326 * 5 4 3 7 7 H 1.08001 * 120.00108 * 207.52766 * 6 5 4 8 8 C 1.39948 * 119.99565 * 27.53742 * 6 5 4 9 9 N 1.30864 * 120.00299 * 13.47729 * 8 6 5 10 10 Si 1.86803 * 119.99701 * 193.47577 * 8 6 5 11 11 H 1.48500 * 109.47196 * 59.99959 * 10 8 6 12 12 H 1.48503 * 109.47264 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47145 * 300.00114 * 10 8 6 14 14 C 1.41709 * 118.58875 * 0.49257 * 5 4 3 15 15 N 1.38085 * 119.90435 * 179.77429 * 14 5 4 16 16 C 1.46854 * 111.00345 * 236.52213 * 15 14 5 17 17 C 1.53155 * 109.45178 * 173.60817 * 16 15 14 18 18 C 1.52467 * 109.31180 * 58.17960 * 17 16 15 19 19 C 1.54275 * 110.10197 * 65.75665 * 18 17 16 20 20 C 1.55115 * 101.94247 * 98.25256 * 19 18 17 21 21 O 1.44436 * 103.56358 * 36.59197 * 20 19 18 22 22 C 1.43897 * 107.00154 * 320.28241 * 21 20 19 23 23 C 1.53006 * 109.90944 * 266.98882 * 22 21 20 24 24 C 1.53003 * 110.07238 * 145.80313 * 22 21 20 25 25 C 1.52465 * 110.63805 * 303.81560 * 18 17 16 26 26 C 1.46856 * 110.99761 * 112.15661 * 15 14 5 27 27 N 1.31965 * 119.27967 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47220 * 270.02482 * 1 2 3 29 29 H 1.08995 * 109.47006 * 30.02613 * 1 2 3 30 30 H 1.09003 * 109.46619 * 150.02204 * 1 2 3 31 31 H 1.07997 * 120.18909 * 359.94937 * 3 2 1 32 32 H 1.08001 * 120.86176 * 180.02562 * 4 3 2 33 33 H 0.97000 * 120.00174 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.46894 * 53.61715 * 16 15 14 35 35 H 1.08995 * 109.48202 * 293.60591 * 16 15 14 36 36 H 1.09001 * 109.49666 * 298.23198 * 17 16 15 37 37 H 1.08997 * 109.52904 * 178.14954 * 17 16 15 38 38 H 1.08994 * 110.93896 * 216.41666 * 19 18 17 39 39 H 1.09002 * 110.93012 * 340.09578 * 19 18 17 40 40 H 1.09004 * 110.59844 * 155.10970 * 20 19 18 41 41 H 1.08999 * 110.60610 * 278.06815 * 20 19 18 42 42 H 1.09001 * 109.47086 * 177.62272 * 23 22 21 43 43 H 1.09007 * 109.46987 * 297.62097 * 23 22 21 44 44 H 1.09000 * 109.47322 * 57.62504 * 23 22 21 45 45 H 1.08992 * 109.47375 * 302.28262 * 24 22 21 46 46 H 1.09001 * 109.46902 * 62.28085 * 24 22 21 47 47 H 1.09003 * 109.47104 * 182.27576 * 24 22 21 48 48 H 1.08998 * 109.49157 * 176.12144 * 25 18 17 49 49 H 1.08996 * 109.49757 * 296.22092 * 25 18 17 50 50 H 1.09000 * 109.47679 * 306.37486 * 26 15 14 51 51 H 1.09001 * 109.47630 * 66.39115 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2098 0.0000 4 6 3.5652 1.2183 0.0005 5 6 4.2409 -0.0193 0.0066 6 6 5.6502 -0.0703 0.0126 7 1 6.1616 -0.9199 -0.4154 8 6 6.3859 0.9798 0.5732 9 7 5.7873 1.8729 1.3193 10 14 8.2225 1.1068 0.2565 11 1 8.4654 1.2375 -1.2027 12 1 8.7644 2.2990 0.9567 13 1 8.8978 -0.1149 0.7632 14 6 3.4738 -1.2108 0.0011 15 7 4.1075 -2.4376 0.0021 16 6 3.6825 -3.2506 -1.1447 17 6 4.5195 -4.5320 -1.1996 18 6 4.3528 -5.2995 0.1073 19 6 2.8984 -5.7941 0.2499 20 6 3.0106 -7.2642 -0.2318 21 8 4.2988 -7.6866 0.2666 22 6 5.2010 -6.5792 0.0926 23 6 5.9295 -6.7062 -1.2469 24 6 6.2165 -6.5445 1.2365 25 6 4.7273 -4.4226 1.2970 26 6 3.8837 -3.1445 1.2698 27 7 2.1524 -1.1511 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6364 2.1399 -0.0008 32 1 4.1135 2.1487 0.0010 33 1 6.2972 2.6010 1.7076 34 1 3.8252 -2.6836 -2.0647 35 1 2.6291 -3.5089 -1.0367 36 1 5.5695 -4.2750 -1.3391 37 1 4.1830 -5.1516 -2.0308 38 1 2.5716 -5.7485 1.2887 39 1 2.2283 -5.2236 -0.3932 40 1 2.2146 -7.8710 0.1998 41 1 2.9853 -7.3142 -1.3203 42 1 6.5791 -5.8428 -1.3904 43 1 6.5292 -7.6165 -1.2495 44 1 5.1993 -6.7497 -2.0550 45 1 5.6897 -6.4735 2.1880 46 1 6.8144 -7.4557 1.2194 47 1 6.8690 -5.6795 1.1170 48 1 4.5363 -4.9650 2.2229 49 1 5.7841 -4.1623 1.2386 50 1 4.1724 -2.5008 2.1007 51 1 2.8288 -3.4035 1.3602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157806423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:51 Heat of formation + Delta-G solvation = -28.579657 kcal Electronic energy + Delta-G solvation = -30354.832460 eV Core-core repulsion = 26638.854476 eV Total energy + Delta-G solvation = -3715.977984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.13285 -40.55642 -38.31055 -36.02060 -35.19716 -33.49687 -32.67872 -32.25429 -31.62230 -29.56731 -29.08325 -28.32015 -26.16972 -25.29264 -23.97816 -23.61663 -22.71329 -22.17961 -21.08987 -19.13757 -19.06726 -17.88865 -17.33421 -17.18448 -16.67531 -16.30298 -16.06912 -15.83931 -15.63881 -15.05620 -14.97363 -14.63574 -14.39240 -14.31882 -14.01674 -13.93474 -13.81390 -13.53339 -13.39016 -13.14970 -13.13149 -13.05227 -12.90933 -12.69009 -12.59032 -12.46361 -12.34531 -12.23082 -12.14219 -11.93477 -11.78884 -11.66668 -11.31446 -11.13863 -11.10472 -11.03168 -10.49159 -10.19231 -9.97031 -9.23589 -9.07965 -8.59440 -6.28573 0.76409 1.04926 1.40835 1.51425 1.55382 2.22107 2.76037 2.93727 3.11937 3.48881 3.59973 3.68464 3.76363 4.06549 4.11958 4.17563 4.23995 4.28195 4.31843 4.41664 4.44897 4.54802 4.61247 4.63770 4.65140 4.69369 4.75492 4.82306 4.87270 4.91985 4.92574 4.93974 4.96922 4.99439 5.01624 5.04748 5.12552 5.13701 5.21142 5.23885 5.24790 5.32786 5.35039 5.36559 5.47478 5.50923 5.79716 5.86026 6.09056 6.16584 6.36571 6.44961 6.75525 6.85023 7.13640 7.74756 8.31915 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.004669 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.268208 B = 5996.135675 C = 7873.761965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.017 4.017 3 C -0.153 4.153 4 C -0.155 4.155 5 C 0.059 3.941 6 C -0.440 4.440 7 H 0.085 0.915 8 C 0.032 3.968 9 N -0.827 5.827 10 Si 0.981 3.019 11 H -0.260 1.260 12 H -0.271 1.271 13 H -0.259 1.259 14 C 0.153 3.847 15 N -0.458 5.458 16 C 0.070 3.930 17 C -0.091 4.091 18 C -0.072 4.072 19 C -0.146 4.146 20 C 0.050 3.950 21 O -0.386 6.386 22 C 0.109 3.891 23 C -0.162 4.162 24 C -0.145 4.145 25 C -0.090 4.090 26 C 0.077 3.923 27 N -0.500 5.500 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.288 0.712 34 H 0.048 0.952 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.039 0.961 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 -12.332 -2.634 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.157 4.157 3 C -0.173 4.173 4 C -0.182 4.182 5 C 0.054 3.946 6 C -0.470 4.470 7 H 0.104 0.896 8 C -0.182 4.182 9 N -0.453 5.453 10 Si 0.802 3.198 11 H -0.185 1.185 12 H -0.196 1.196 13 H -0.183 1.183 14 C -0.078 4.078 15 N -0.180 5.180 16 C -0.057 4.057 17 C -0.128 4.128 18 C -0.073 4.073 19 C -0.183 4.183 20 C -0.026 4.026 21 O -0.306 6.306 22 C 0.070 3.930 23 C -0.219 4.219 24 C -0.202 4.202 25 C -0.127 4.127 26 C -0.050 4.050 27 N -0.212 5.212 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.058 0.942 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.444 -13.015 -2.436 13.248 hybrid contribution 0.102 1.604 0.165 1.615 sum -0.342 -11.411 -2.271 11.640 Atomic orbital electron populations 1.20305 0.88533 1.02102 1.01455 1.20810 0.96793 0.87929 1.10154 1.21718 0.94807 0.98391 1.02402 1.21666 0.93434 0.98309 1.04752 1.18470 0.95051 0.90689 0.90438 1.19580 0.91065 1.04042 1.32296 0.89647 1.26816 1.05743 0.93595 0.92085 1.69852 1.40529 1.11897 1.22994 0.85252 0.76093 0.78815 0.79619 1.18459 1.19552 1.18304 1.19683 0.86480 0.91024 1.10658 1.59343 1.55077 1.00687 1.02887 1.22023 0.97015 0.94046 0.92626 1.21631 1.00741 0.93874 0.96585 1.21401 0.95148 0.94823 0.95916 1.23204 0.96212 0.96776 1.02157 1.23606 0.85960 0.94041 0.99015 1.88880 1.20670 1.37163 1.83867 1.22044 0.90245 0.84419 0.96330 1.22314 1.00780 1.02682 0.96116 1.22003 0.98126 1.02632 0.97418 1.21640 1.00169 0.93273 0.97658 1.21908 0.97362 0.94837 0.90900 1.66924 1.11140 1.30785 1.12394 0.92233 0.90559 0.92391 0.85958 0.86846 0.90118 0.93388 0.95174 0.90696 0.89755 0.91167 0.90684 0.87919 0.91434 0.90752 0.91831 0.91810 0.92004 0.91742 0.90525 0.90396 0.90801 0.94225 0.95830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.15 71.24 0.72 -1.55 16 2 C -0.02 -0.75 6.79 42.65 0.29 -0.46 16 3 C -0.15 -7.08 9.69 22.32 0.22 -6.87 16 4 C -0.16 -8.07 8.77 22.89 0.20 -7.87 16 5 C 0.06 3.17 5.58 -21.06 -0.12 3.05 16 6 C -0.44 -22.93 8.68 23.37 0.20 -22.73 16 7 H 0.09 4.38 7.63 -2.91 -0.02 4.36 16 8 C 0.03 1.58 5.23 85.25 0.45 2.02 16 9 N -0.83 -42.02 10.95 21.83 0.24 -41.78 16 10 Si 0.98 37.30 29.58 68.60 2.03 39.33 16 11 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 12 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 13 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 14 C 0.15 7.58 5.31 134.05 0.71 8.30 16 15 N -0.46 -19.39 3.84 -699.81 -2.69 -22.08 16 16 C 0.07 2.54 5.00 86.36 0.43 2.98 16 17 C -0.09 -2.50 3.65 30.47 0.11 -2.39 16 18 C -0.07 -1.87 0.63 -51.92 -0.03 -1.91 16 19 C -0.15 -3.60 5.14 31.75 0.16 -3.44 16 20 C 0.05 1.06 7.68 72.71 0.56 1.61 16 21 O -0.39 -9.58 10.88 -148.98 -1.62 -11.20 16 22 C 0.11 2.52 1.19 -10.61 -0.01 2.50 16 23 C -0.16 -3.30 7.66 71.98 0.55 -2.75 16 24 C -0.14 -3.15 7.71 71.98 0.56 -2.60 16 25 C -0.09 -2.66 3.57 30.47 0.11 -2.55 16 26 C 0.08 2.98 5.14 86.37 0.44 3.43 16 27 N -0.50 -23.96 9.62 -179.57 -1.73 -25.69 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 32 H 0.11 6.07 6.33 -2.91 -0.02 6.05 16 33 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 34 H 0.05 1.87 8.10 -2.38 -0.02 1.85 16 35 H 0.03 1.13 6.33 -2.39 -0.02 1.11 16 36 H 0.07 2.10 6.73 -2.39 -0.02 2.09 16 37 H 0.08 1.97 6.80 -2.39 -0.02 1.95 16 38 H 0.07 1.80 7.75 -2.39 -0.02 1.78 16 39 H 0.07 1.98 6.22 -2.39 -0.01 1.96 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.49 6.71 -2.39 -0.02 1.47 16 43 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.06 1.24 6.81 -2.39 -0.02 1.22 16 45 H 0.06 1.37 6.73 -2.39 -0.02 1.35 16 46 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.08 1.64 6.81 -2.39 -0.02 1.62 16 48 H 0.08 2.10 6.83 -2.39 -0.02 2.08 16 49 H 0.07 2.24 6.65 -2.39 -0.02 2.22 16 50 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 51 H 0.02 0.93 7.42 -2.39 -0.02 0.92 16 Total: -1.00 -59.62 378.99 2.70 -56.92 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.92 Total: 35.72 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 5.55 Total: -31.22 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -4.17 Total: -89.54 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -1.62 Total: -11.20 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -59.62 2.70 -56.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157806423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.337 kcal (2) G-P(sol) polarization free energy of solvation -59.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds