Wall clock time and date at job start Tue Mar 31 2020 15:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31480 * 119.81470 * 2 1 4 4 C 1.32746 * 121.72968 * 180.30770 * 3 2 1 5 5 N 1.38370 * 119.43224 * 179.70549 * 4 3 2 6 6 C 1.46499 * 120.00320 * 179.73126 * 5 4 3 7 7 C 1.52994 * 109.47242 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.54017 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47248 * 60.00398 * 8 7 6 10 10 C 1.52992 * 117.50089 * 116.37395 * 9 8 7 11 11 C 1.52999 * 117.50069 * 185.00030 * 9 8 7 12 12 C 1.53178 * 109.54533 * 300.17721 * 7 6 5 13 13 C 1.53284 * 109.06147 * 176.85637 * 12 7 6 14 14 O 1.42902 * 109.45984 * 302.44043 * 13 12 7 15 15 C 1.42905 * 114.09576 * 61.15928 * 14 13 12 16 16 C 1.53088 * 109.41958 * 298.84560 * 15 14 13 17 17 C 1.39704 * 121.13725 * 359.43370 * 4 3 2 18 18 C 1.36563 * 119.49335 * 0.27283 * 17 4 3 19 19 C 1.40755 * 119.81126 * 179.74794 * 2 1 3 20 20 C 1.41196 * 120.57467 * 0.02562 * 19 2 1 21 21 H 1.07993 * 120.00007 * 334.72900 * 20 19 2 22 22 C 1.39866 * 120.00141 * 154.73135 * 20 19 2 23 23 N 1.30909 * 119.99785 * 343.69738 * 22 20 19 24 24 Si 1.86801 * 120.00479 * 163.69703 * 22 20 19 25 25 H 1.48500 * 109.46764 * 59.99618 * 24 22 20 26 26 H 1.48495 * 109.47180 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46946 * 300.00264 * 24 22 20 28 28 H 1.08993 * 109.47330 * 270.25368 * 1 2 3 29 29 H 1.08999 * 109.47191 * 30.25279 * 1 2 3 30 30 H 1.09006 * 109.46863 * 150.25208 * 1 2 3 31 31 H 0.97006 * 119.99669 * 359.73043 * 5 4 3 32 32 H 1.09001 * 109.47053 * 59.99814 * 6 5 4 33 33 H 1.09001 * 109.46865 * 300.00530 * 6 5 4 34 34 H 1.08996 * 109.47814 * 299.99675 * 8 7 6 35 35 H 1.09006 * 109.47092 * 180.02562 * 8 7 6 36 36 H 1.09005 * 115.55790 * 330.68742 * 9 8 7 37 37 H 1.09003 * 117.50152 * 214.98019 * 10 9 8 38 38 H 1.09007 * 117.50240 * 359.97438 * 10 9 8 39 39 H 1.09001 * 117.49981 * 359.97438 * 11 9 8 40 40 H 1.08991 * 117.49878 * 145.02122 * 11 9 8 41 41 H 1.09007 * 109.51994 * 296.84001 * 12 7 6 42 42 H 1.08992 * 109.52125 * 57.03022 * 12 7 6 43 43 H 1.09007 * 109.45233 * 182.44677 * 13 12 7 44 44 H 1.08998 * 109.46864 * 62.44882 * 13 12 7 45 45 H 1.08997 * 109.47650 * 178.85501 * 15 14 13 46 46 H 1.09001 * 109.48316 * 58.83228 * 15 14 13 47 47 H 1.09002 * 109.51722 * 297.70176 * 16 15 14 48 48 H 1.09000 * 109.57356 * 177.54677 * 16 15 14 49 49 H 1.07999 * 120.25406 * 180.29021 * 17 4 3 50 50 H 1.08005 * 120.79522 * 179.97438 * 18 17 4 51 51 H 0.97001 * 119.99639 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1851 -0.0061 5 7 4.1267 2.4123 -0.0120 6 6 5.5903 2.4759 -0.0127 7 6 6.0372 3.9391 -0.0190 8 6 7.5657 4.0073 -0.0192 9 6 8.1075 3.3042 -1.2654 10 6 8.8741 4.1552 -2.2797 11 6 9.6255 3.1610 -1.3921 12 6 5.4925 4.6359 -1.2696 13 6 5.8799 6.1183 -1.2255 14 8 5.3695 6.7083 -0.0282 15 6 5.8807 6.1264 1.1728 16 6 5.4935 4.6463 1.2261 17 6 4.2494 0.0142 -0.0009 18 6 3.6198 -1.1976 0.0049 19 6 2.2068 -1.2213 0.0054 20 6 1.5090 -2.4488 0.0102 21 1 0.5068 -2.4986 0.4093 22 6 2.1159 -3.6002 -0.5018 23 7 3.1754 -3.4980 -1.2638 24 14 1.4147 -5.2839 -0.0983 25 1 0.0154 -5.3677 -0.5884 26 1 2.2335 -6.3323 -0.7583 27 1 1.4373 -5.4901 1.3722 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3633 -0.8923 -0.5099 31 1 3.6057 3.2305 -0.0156 32 1 5.9753 1.9741 -0.9005 33 1 5.9758 1.9823 0.8794 34 1 7.9517 3.5141 0.8729 35 1 7.8829 5.0501 -0.0232 36 1 7.4914 2.4927 -1.6528 37 1 8.7624 3.9038 -3.3344 38 1 8.9921 5.2163 -2.0594 39 1 10.2383 3.5681 -0.5878 40 1 10.0081 2.2555 -1.8628 41 1 5.9184 4.1723 -2.1596 42 1 4.4068 4.5440 -1.2940 43 1 5.4584 6.6296 -2.0910 44 1 6.9658 6.2107 -1.2420 45 1 5.4599 6.6437 2.0350 46 1 6.9667 6.2188 1.1879 47 1 4.4076 4.5547 1.2520 48 1 5.9190 4.1895 2.1197 49 1 5.3281 0.0670 -0.0012 50 1 4.1882 -2.1160 0.0085 51 1 3.5961 -4.2965 -1.6192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161655445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:01 Heat of formation + Delta-G solvation = -3.892171 kcal Electronic energy + Delta-G solvation = -28943.493189 eV Core-core repulsion = 25228.585735 eV Total energy + Delta-G solvation = -3714.907454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.52877 -38.55635 -37.51077 -36.01587 -34.16241 -33.01219 -31.21703 -30.94752 -30.03178 -28.42909 -26.85517 -26.21673 -23.98368 -23.79877 -22.92380 -22.52634 -21.18590 -21.01273 -20.03582 -18.29700 -17.19027 -16.69272 -16.38001 -16.10397 -15.51344 -15.20915 -15.03920 -14.97623 -14.82245 -14.15160 -13.76198 -13.61518 -13.49880 -13.34110 -12.83425 -12.78441 -12.48667 -12.23216 -11.97634 -11.80641 -11.72458 -11.57109 -11.45068 -11.33537 -11.32644 -11.27211 -11.21467 -11.09241 -10.80251 -10.56161 -10.46453 -10.35564 -10.10020 -9.97274 -9.66327 -9.43751 -9.31109 -8.56974 -8.10859 -7.95016 -6.77352 -6.53230 -4.14217 2.78074 3.01151 3.09462 3.12775 3.33226 3.63386 3.79355 3.97930 4.15684 4.33084 4.52479 4.69130 4.73554 4.80794 4.82351 4.85739 4.93937 5.08340 5.13258 5.27122 5.37335 5.46534 5.50761 5.54257 5.59833 5.67538 5.68985 5.74023 5.76205 5.81623 5.88515 5.94616 6.01919 6.02226 6.12605 6.21609 6.28874 6.31277 6.42919 6.55090 6.60362 6.72053 6.84455 7.09012 7.10323 7.25943 7.43521 7.51957 7.79586 7.94641 8.32552 8.48181 8.70399 8.89000 8.97355 9.78827 10.27641 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.002881 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.992939 B = 9716.232903 C =10918.273769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.037 3.963 3 N -0.522 5.522 4 C 0.287 3.713 5 N -0.742 5.742 6 C 0.156 3.844 7 C -0.062 4.062 8 C -0.080 4.080 9 C -0.151 4.151 10 C -0.182 4.182 11 C -0.182 4.182 12 C -0.142 4.142 13 C 0.061 3.939 14 O -0.384 6.384 15 C 0.060 3.940 16 C -0.146 4.146 17 C -0.209 4.209 18 C -0.091 4.091 19 C 0.033 3.967 20 C -0.455 4.455 21 H 0.079 0.921 22 C 0.074 3.926 23 N -0.808 5.808 24 Si 0.906 3.094 25 H -0.266 1.266 26 H -0.280 1.280 27 H -0.265 1.265 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.388 0.612 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.095 0.905 50 H 0.126 0.874 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.988 13.659 0.849 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 N -0.238 5.238 4 C 0.054 3.946 5 N -0.383 5.383 6 C 0.030 3.970 7 C -0.063 4.063 8 C -0.118 4.118 9 C -0.169 4.169 10 C -0.219 4.219 11 C -0.219 4.219 12 C -0.180 4.180 13 C -0.016 4.016 14 O -0.303 6.303 15 C -0.016 4.016 16 C -0.183 4.183 17 C -0.233 4.233 18 C -0.118 4.118 19 C 0.028 3.972 20 C -0.486 4.486 21 H 0.097 0.903 22 C -0.142 4.142 23 N -0.435 5.435 24 Si 0.731 3.269 25 H -0.191 1.191 26 H -0.205 1.205 27 H -0.190 1.190 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.223 0.777 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.113 0.887 50 H 0.143 0.857 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.708 14.326 0.709 17.900 hybrid contribution 0.420 -1.715 0.024 1.765 sum 11.128 12.611 0.733 16.835 Atomic orbital electron populations 1.20248 0.91294 1.01054 1.00181 1.20729 0.94642 0.87427 1.07346 1.66313 1.07404 1.31246 1.18868 1.17689 0.88186 0.85031 1.03716 1.43676 1.03498 1.04787 1.86294 1.21060 0.81750 0.93776 1.00417 1.20741 0.94771 0.95385 0.95374 1.21291 0.93719 1.00071 0.96696 1.22458 0.93955 1.02277 0.98236 1.23018 1.05133 0.96893 0.96840 1.22949 0.94664 1.01434 1.02878 1.22246 1.02266 0.95440 0.98051 1.22640 0.98027 0.93367 0.87517 1.87927 1.69331 1.59187 1.13809 1.22601 0.97949 0.93408 0.87667 1.22245 1.02715 0.95503 0.97867 1.20778 0.98071 0.92923 1.11493 1.21271 0.94883 0.96136 0.99494 1.18138 0.92175 0.93049 0.93830 1.19299 1.01542 0.91973 1.35784 0.90313 1.25845 0.94432 1.01162 0.92761 1.69818 1.18584 1.31345 1.23708 0.86402 0.79759 0.80980 0.79746 1.19092 1.20544 1.19012 0.93487 0.93467 0.91375 0.77713 0.92927 0.93322 0.91153 0.91409 0.87037 0.88994 0.89140 0.89060 0.88891 0.90392 0.90631 0.89260 0.93204 0.89158 0.93328 0.90306 0.90745 0.88717 0.85662 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 9.58 36.01 0.34 -1.17 16 2 C 0.04 0.94 6.86 -81.79 -0.56 0.38 16 3 N -0.52 -12.86 10.29 -8.05 -0.08 -12.94 16 4 C 0.29 6.52 7.64 -155.12 -1.19 5.34 16 5 N -0.74 -13.26 5.06 -60.36 -0.31 -13.57 16 6 C 0.16 2.23 3.53 -4.05 -0.01 2.21 16 7 C -0.06 -0.68 0.31 -154.33 -0.05 -0.73 16 8 C -0.08 -0.74 4.00 -26.73 -0.11 -0.85 16 9 C -0.15 -1.44 4.22 -90.62 -0.38 -1.82 16 10 C -0.18 -1.52 10.18 -26.73 -0.27 -1.79 16 11 C -0.18 -1.56 10.25 -26.73 -0.27 -1.84 16 12 C -0.14 -1.58 4.62 -26.49 -0.12 -1.71 16 13 C 0.06 0.61 6.57 37.30 0.25 0.86 16 14 O -0.38 -4.51 10.77 -35.23 -0.38 -4.89 16 15 C 0.06 0.59 6.57 37.20 0.24 0.84 16 16 C -0.15 -1.58 4.78 -26.60 -0.13 -1.70 16 17 C -0.21 -4.88 9.24 -39.64 -0.37 -5.25 16 18 C -0.09 -2.37 8.73 -39.01 -0.34 -2.71 16 19 C 0.03 0.88 5.58 -106.65 -0.59 0.29 16 20 C -0.45 -11.90 8.14 -37.85 -0.31 -12.21 16 21 H 0.08 1.97 6.86 -52.49 -0.36 1.61 16 22 C 0.07 1.84 5.19 -17.34 -0.09 1.75 16 23 N -0.81 -20.85 10.95 55.54 0.61 -20.24 16 24 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.45 6.76 -51.93 -0.35 1.10 16 31 H 0.39 6.72 6.25 -40.82 -0.26 6.47 16 32 H 0.05 0.79 5.91 -51.93 -0.31 0.48 16 33 H 0.05 0.72 7.90 -51.93 -0.41 0.31 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.58 4.74 -51.93 -0.25 0.33 16 36 H 0.11 1.23 6.07 -51.93 -0.32 0.92 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.69 8.03 -51.92 -0.42 0.27 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.86 7.13 -51.92 -0.37 0.49 16 42 H 0.08 0.99 6.79 -51.93 -0.35 0.63 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.44 6.60 -51.93 -0.34 0.10 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.41 6.60 -51.93 -0.34 0.07 16 47 H 0.08 1.00 6.79 -51.93 -0.35 0.65 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.09 1.98 6.64 -52.49 -0.35 1.63 16 50 H 0.13 3.32 6.26 -52.48 -0.33 2.99 16 51 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -28.53 384.85 -11.39 -39.92 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -8.04 Total: 12.35 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -3.96 Total: -20.11 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.22 Total: -46.75 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.38 Total: -4.89 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.53 -11.39 -39.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161655445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.023 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds