Wall clock time and date at job start Tue Mar 31 2020 15:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31480 * 119.81470 * 2 1 4 4 C 1.32746 * 121.72968 * 180.30770 * 3 2 1 5 5 N 1.38370 * 119.43224 * 179.70549 * 4 3 2 6 6 C 1.46499 * 120.00320 * 179.73126 * 5 4 3 7 7 C 1.52994 * 109.47242 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.54017 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47248 * 60.00398 * 8 7 6 10 10 C 1.52992 * 117.50089 * 116.37395 * 9 8 7 11 11 C 1.52999 * 117.50069 * 185.00030 * 9 8 7 12 12 C 1.53178 * 109.54533 * 300.17721 * 7 6 5 13 13 C 1.53284 * 109.06147 * 176.85637 * 12 7 6 14 14 O 1.42902 * 109.45984 * 302.44043 * 13 12 7 15 15 C 1.42905 * 114.09576 * 61.15928 * 14 13 12 16 16 C 1.53088 * 109.41958 * 298.84560 * 15 14 13 17 17 C 1.39704 * 121.13725 * 359.43370 * 4 3 2 18 18 C 1.36563 * 119.49335 * 0.27283 * 17 4 3 19 19 C 1.40755 * 119.81126 * 179.74794 * 2 1 3 20 20 C 1.41196 * 120.57467 * 0.02562 * 19 2 1 21 21 H 1.07993 * 120.00007 * 334.72900 * 20 19 2 22 22 C 1.39866 * 120.00141 * 154.73135 * 20 19 2 23 23 N 1.30909 * 119.99785 * 343.69738 * 22 20 19 24 24 Si 1.86801 * 120.00479 * 163.69703 * 22 20 19 25 25 H 1.48500 * 109.46764 * 59.99618 * 24 22 20 26 26 H 1.48495 * 109.47180 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46946 * 300.00264 * 24 22 20 28 28 H 1.08993 * 109.47330 * 270.25368 * 1 2 3 29 29 H 1.08999 * 109.47191 * 30.25279 * 1 2 3 30 30 H 1.09006 * 109.46863 * 150.25208 * 1 2 3 31 31 H 0.97006 * 119.99669 * 359.73043 * 5 4 3 32 32 H 1.09001 * 109.47053 * 59.99814 * 6 5 4 33 33 H 1.09001 * 109.46865 * 300.00530 * 6 5 4 34 34 H 1.08996 * 109.47814 * 299.99675 * 8 7 6 35 35 H 1.09006 * 109.47092 * 180.02562 * 8 7 6 36 36 H 1.09005 * 115.55790 * 330.68742 * 9 8 7 37 37 H 1.09003 * 117.50152 * 214.98019 * 10 9 8 38 38 H 1.09007 * 117.50240 * 359.97438 * 10 9 8 39 39 H 1.09001 * 117.49981 * 359.97438 * 11 9 8 40 40 H 1.08991 * 117.49878 * 145.02122 * 11 9 8 41 41 H 1.09007 * 109.51994 * 296.84001 * 12 7 6 42 42 H 1.08992 * 109.52125 * 57.03022 * 12 7 6 43 43 H 1.09007 * 109.45233 * 182.44677 * 13 12 7 44 44 H 1.08998 * 109.46864 * 62.44882 * 13 12 7 45 45 H 1.08997 * 109.47650 * 178.85501 * 15 14 13 46 46 H 1.09001 * 109.48316 * 58.83228 * 15 14 13 47 47 H 1.09002 * 109.51722 * 297.70176 * 16 15 14 48 48 H 1.09000 * 109.57356 * 177.54677 * 16 15 14 49 49 H 1.07999 * 120.25406 * 180.29021 * 17 4 3 50 50 H 1.08005 * 120.79522 * 179.97438 * 18 17 4 51 51 H 0.97001 * 119.99639 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1851 -0.0061 5 7 4.1267 2.4123 -0.0120 6 6 5.5903 2.4759 -0.0127 7 6 6.0372 3.9391 -0.0190 8 6 7.5657 4.0073 -0.0192 9 6 8.1075 3.3042 -1.2654 10 6 8.8741 4.1552 -2.2797 11 6 9.6255 3.1610 -1.3921 12 6 5.4925 4.6359 -1.2696 13 6 5.8799 6.1183 -1.2255 14 8 5.3695 6.7083 -0.0282 15 6 5.8807 6.1264 1.1728 16 6 5.4935 4.6463 1.2261 17 6 4.2494 0.0142 -0.0009 18 6 3.6198 -1.1976 0.0049 19 6 2.2068 -1.2213 0.0054 20 6 1.5090 -2.4488 0.0102 21 1 0.5068 -2.4986 0.4093 22 6 2.1159 -3.6002 -0.5018 23 7 3.1754 -3.4980 -1.2638 24 14 1.4147 -5.2839 -0.0983 25 1 0.0154 -5.3677 -0.5884 26 1 2.2335 -6.3323 -0.7583 27 1 1.4373 -5.4901 1.3722 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3633 -0.8923 -0.5099 31 1 3.6057 3.2305 -0.0156 32 1 5.9753 1.9741 -0.9005 33 1 5.9758 1.9823 0.8794 34 1 7.9517 3.5141 0.8729 35 1 7.8829 5.0501 -0.0232 36 1 7.4914 2.4927 -1.6528 37 1 8.7624 3.9038 -3.3344 38 1 8.9921 5.2163 -2.0594 39 1 10.2383 3.5681 -0.5878 40 1 10.0081 2.2555 -1.8628 41 1 5.9184 4.1723 -2.1596 42 1 4.4068 4.5440 -1.2940 43 1 5.4584 6.6296 -2.0910 44 1 6.9658 6.2107 -1.2420 45 1 5.4599 6.6437 2.0350 46 1 6.9667 6.2188 1.1879 47 1 4.4076 4.5547 1.2520 48 1 5.9190 4.1895 2.1197 49 1 5.3281 0.0670 -0.0012 50 1 4.1882 -2.1160 0.0085 51 1 3.5961 -4.2965 -1.6192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161655445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:00 Heat of formation + Delta-G solvation = -17.794088 kcal Electronic energy + Delta-G solvation = -28944.096022 eV Core-core repulsion = 25228.585735 eV Total energy + Delta-G solvation = -3715.510287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.46586 -40.35240 -38.27636 -37.26803 -35.77924 -34.53990 -32.80007 -32.04427 -31.75909 -29.31006 -28.66245 -27.50177 -25.72503 -24.63972 -23.96278 -23.17608 -23.02698 -21.81748 -21.74687 -19.24903 -19.07158 -18.23866 -17.39704 -16.94780 -16.90838 -16.56337 -16.26997 -15.99549 -15.77888 -15.41259 -15.28476 -15.11550 -14.78202 -14.43181 -14.20771 -14.13208 -13.67526 -13.54721 -13.44217 -13.23461 -13.12048 -12.92508 -12.77522 -12.74457 -12.59965 -12.38852 -12.27374 -12.19453 -12.18559 -12.11616 -11.55599 -11.40267 -11.17671 -11.11523 -10.88875 -10.69131 -10.33971 -10.28625 -9.98768 -9.87314 -8.62789 -8.34079 -6.07925 0.90012 1.14941 1.41724 1.52026 1.59361 2.25582 2.65585 2.84906 2.96618 3.02386 3.50621 3.63474 3.77781 3.79353 3.98074 4.08473 4.10480 4.14108 4.18581 4.30167 4.31530 4.44488 4.56387 4.60601 4.67352 4.70100 4.73008 4.76062 4.78777 4.79286 4.82428 4.85131 4.90367 5.00303 5.04347 5.05331 5.07810 5.08756 5.22037 5.22048 5.30318 5.32942 5.37303 5.40958 5.46628 5.56475 5.68412 5.90892 6.02801 6.31937 6.52354 6.67117 6.87439 6.97293 7.16604 7.90034 8.43159 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.002881 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.992939 B = 9716.232903 C =10918.273769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.022 3.978 3 N -0.539 5.539 4 C 0.291 3.709 5 N -0.730 5.730 6 C 0.153 3.847 7 C -0.051 4.051 8 C -0.071 4.071 9 C -0.164 4.164 10 C -0.174 4.174 11 C -0.180 4.180 12 C -0.139 4.139 13 C 0.063 3.937 14 O -0.403 6.403 15 C 0.061 3.939 16 C -0.144 4.144 17 C -0.215 4.215 18 C -0.109 4.109 19 C -0.001 4.001 20 C -0.484 4.484 21 H 0.082 0.918 22 C 0.033 3.967 23 N -0.840 5.840 24 Si 0.979 3.021 25 H -0.259 1.259 26 H -0.273 1.273 27 H -0.262 1.262 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.392 0.608 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.082 0.918 49 H 0.115 0.885 50 H 0.112 0.888 51 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.108 14.826 1.236 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 N -0.256 5.256 4 C 0.057 3.943 5 N -0.369 5.369 6 C 0.029 3.971 7 C -0.052 4.052 8 C -0.109 4.109 9 C -0.182 4.182 10 C -0.211 4.211 11 C -0.217 4.217 12 C -0.177 4.177 13 C -0.013 4.013 14 O -0.322 6.322 15 C -0.015 4.015 16 C -0.182 4.182 17 C -0.239 4.239 18 C -0.135 4.135 19 C -0.006 4.006 20 C -0.515 4.515 21 H 0.100 0.900 22 C -0.180 4.180 23 N -0.468 5.468 24 Si 0.800 3.200 25 H -0.184 1.184 26 H -0.197 1.197 27 H -0.187 1.187 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.228 0.772 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.087 0.913 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.133 0.867 50 H 0.130 0.870 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.847 15.534 1.095 19.566 hybrid contribution 0.148 -1.952 -0.119 1.961 sum 11.994 13.582 0.976 18.146 Atomic orbital electron populations 1.20231 0.89127 1.01495 1.01242 1.21280 0.96418 0.87307 1.06650 1.66460 1.08168 1.30995 1.19967 1.18055 0.88014 0.86583 1.01684 1.43801 1.05013 1.03265 1.84869 1.21259 0.79370 0.96522 0.99983 1.20651 0.96203 0.92748 0.95579 1.21233 0.91779 1.01071 0.96781 1.22359 0.94460 1.02465 0.98947 1.23083 1.03971 0.97496 0.96579 1.23014 0.93917 1.01567 1.03232 1.22197 1.00669 0.96754 0.98092 1.22697 0.99126 0.92067 0.87393 1.87912 1.70048 1.59583 1.14664 1.22704 0.99188 0.92203 0.87435 1.22224 1.01259 0.96758 0.97953 1.20941 0.99186 0.92461 1.11356 1.21290 0.95064 0.96532 1.00657 1.18476 0.92762 0.94070 0.95332 1.19528 1.02091 0.92771 1.37080 0.90008 1.26673 0.94647 1.04677 0.92006 1.69884 1.19836 1.32615 1.24474 0.85296 0.79196 0.76031 0.79444 1.18354 1.19729 1.18699 0.92008 0.92260 0.91546 0.77233 0.93428 0.93500 0.90712 0.89751 0.89079 0.89093 0.87750 0.87889 0.89187 0.90386 0.93030 0.88554 0.91314 0.88176 0.91283 0.92590 0.89990 0.86681 0.87005 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.74 9.58 71.24 0.68 -2.06 16 2 C 0.02 1.11 6.86 43.23 0.30 1.41 16 3 N -0.54 -26.85 10.29 -179.37 -1.85 -28.70 16 4 C 0.29 13.41 7.64 133.31 1.02 14.43 16 5 N -0.73 -26.15 5.06 -344.87 -1.75 -27.90 16 6 C 0.15 4.32 3.53 86.38 0.30 4.62 16 7 C -0.05 -1.05 0.31 -52.06 -0.02 -1.07 16 8 C -0.07 -1.14 4.00 30.60 0.12 -1.02 16 9 C -0.16 -2.84 4.22 -10.80 -0.05 -2.89 16 10 C -0.17 -2.51 10.18 30.59 0.31 -2.19 16 11 C -0.18 -2.72 10.25 30.59 0.31 -2.41 16 12 C -0.14 -2.95 4.62 30.75 0.14 -2.81 16 13 C 0.06 1.13 6.57 72.08 0.47 1.60 16 14 O -0.40 -8.61 10.77 -148.98 -1.60 -10.21 16 15 C 0.06 1.04 6.57 72.01 0.47 1.51 16 16 C -0.14 -2.90 4.78 30.68 0.15 -2.76 16 17 C -0.22 -10.29 9.24 22.23 0.21 -10.09 16 18 C -0.11 -5.83 8.73 22.64 0.20 -5.63 16 19 C 0.00 -0.07 5.58 -21.18 -0.12 -0.19 16 20 C -0.48 -25.92 8.14 23.39 0.19 -25.73 16 21 H 0.08 4.16 6.86 -2.91 -0.02 4.14 16 22 C 0.03 1.65 5.19 85.22 0.44 2.09 16 23 N -0.84 -44.43 10.95 21.82 0.24 -44.19 16 24 Si 0.98 38.55 29.59 68.60 2.03 40.58 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 26 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 27 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 28 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.85 6.76 -2.38 -0.02 2.84 16 31 H 0.39 13.65 6.25 -92.70 -0.58 13.07 16 32 H 0.05 1.43 5.91 -2.39 -0.01 1.41 16 33 H 0.05 1.36 7.90 -2.39 -0.02 1.34 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.12 4.74 -2.38 -0.01 1.10 16 36 H 0.09 1.97 6.07 -2.38 -0.01 1.96 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.22 8.03 -2.38 -0.02 1.20 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.65 7.13 -2.38 -0.02 1.63 16 42 H 0.05 1.34 6.79 -2.39 -0.02 1.32 16 43 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.07 0.98 6.60 -2.39 -0.02 0.96 16 45 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 0.91 6.60 -2.39 -0.02 0.90 16 47 H 0.06 1.39 6.79 -2.39 -0.02 1.37 16 48 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.12 4.87 6.64 -2.91 -0.02 4.85 16 50 H 0.11 6.20 6.26 -2.91 -0.02 6.18 16 51 H 0.28 13.72 8.30 -92.71 -0.77 12.95 16 Total: -1.00 -62.59 384.85 2.58 -60.01 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: 0.36 Total: 43.58 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 5.14 Total: -33.17 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -3.35 Total: -100.79 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.60 Total: -10.21 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -62.59 2.58 -60.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161655445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.217 kcal (2) G-P(sol) polarization free energy of solvation -62.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds