Wall clock time and date at job start Tue Mar 31 2020 15:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38681 * 119.27635 * 2 1 4 4 C 1.38010 * 119.62414 * 179.97438 * 3 2 1 5 5 C 1.40997 * 118.27891 * 359.75105 * 4 3 2 6 6 C 1.41024 * 120.70282 * 180.24615 * 5 4 3 7 7 H 1.07997 * 120.00134 * 154.91801 * 6 5 4 8 8 C 1.39948 * 120.00058 * 334.91510 * 6 5 4 9 9 N 1.30871 * 120.00113 * 343.58709 * 8 6 5 10 10 Si 1.86798 * 120.00049 * 163.58424 * 8 6 5 11 11 H 1.48507 * 109.46969 * 90.00283 * 10 8 6 12 12 H 1.48500 * 109.47122 * 209.99894 * 10 8 6 13 13 H 1.48501 * 109.47454 * 330.00200 * 10 8 6 14 14 C 1.41702 * 118.59252 * 0.48955 * 5 4 3 15 15 N 1.38097 * 119.90702 * 179.78018 * 14 5 4 16 16 C 1.46500 * 120.00125 * 179.72464 * 15 14 5 17 17 C 1.53001 * 109.46955 * 180.02562 * 16 15 14 18 18 C 1.53008 * 109.54177 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47080 * 59.99564 * 18 17 16 20 20 C 1.53005 * 117.49481 * 243.62214 * 19 18 17 21 21 C 1.52997 * 117.49464 * 175.00483 * 19 18 17 22 22 C 1.53175 * 109.54060 * 300.16970 * 17 16 15 23 23 C 1.53282 * 109.06165 * 176.85248 * 22 17 16 24 24 O 1.42898 * 109.46530 * 302.45080 * 23 22 17 25 25 C 1.42909 * 114.09906 * 61.15613 * 24 23 22 26 26 C 1.53092 * 109.41039 * 298.84699 * 25 24 23 27 27 N 1.31971 * 119.27307 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46686 * 270.02190 * 1 2 3 29 29 H 1.09003 * 109.47313 * 30.01894 * 1 2 3 30 30 H 1.08996 * 109.47409 * 150.02285 * 1 2 3 31 31 H 1.08000 * 120.18320 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.85393 * 180.02562 * 4 3 2 33 33 H 0.96991 * 120.00475 * 179.97438 * 9 8 6 34 34 H 0.97000 * 119.99627 * 359.72128 * 15 14 5 35 35 H 1.08992 * 109.47458 * 59.99389 * 16 15 14 36 36 H 1.09001 * 109.46662 * 299.99628 * 16 15 14 37 37 H 1.09005 * 109.46632 * 299.99717 * 18 17 16 38 38 H 1.08991 * 109.47020 * 179.97438 * 18 17 16 39 39 H 1.08996 * 115.55196 * 29.33046 * 19 18 17 40 40 H 1.08991 * 117.50456 * 0.02562 * 20 19 18 41 41 H 1.09000 * 117.49514 * 145.02246 * 20 19 18 42 42 H 1.09004 * 117.49609 * 214.97777 * 21 19 18 43 43 H 1.08999 * 117.50080 * 359.97438 * 21 19 18 44 44 H 1.08997 * 109.52925 * 296.84415 * 22 17 16 45 45 H 1.09003 * 109.51879 * 57.04059 * 22 17 16 46 46 H 1.09004 * 109.46117 * 182.44891 * 23 22 17 47 47 H 1.09006 * 109.46773 * 62.45416 * 23 22 17 48 48 H 1.08999 * 109.47992 * 178.86152 * 25 24 23 49 49 H 1.08999 * 109.48869 * 58.82696 * 25 24 23 50 50 H 1.08999 * 109.52284 * 297.69561 * 26 25 24 51 51 H 1.09010 * 109.57071 * 177.54674 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2181 0.0005 5 6 4.2408 -0.0196 0.0065 6 6 5.6501 -0.0706 0.0125 7 1 6.1574 -0.9357 0.4133 8 6 6.3913 0.9997 -0.5009 9 7 5.8121 1.8893 -1.2663 10 14 8.2074 1.1587 -0.0936 11 1 9.0087 0.4375 -1.1150 12 1 8.5896 2.5936 -0.0874 13 1 8.4678 0.5712 1.2452 14 6 3.4737 -1.2109 0.0010 15 7 4.1073 -2.4379 0.0020 16 6 3.3162 -3.6709 0.0024 17 6 4.2549 -4.8791 0.0041 18 6 3.4302 -6.1680 0.0039 19 6 2.5492 -6.2095 -1.2463 20 6 1.0328 -6.1937 -1.0427 21 6 1.7311 -7.4788 -1.4920 22 6 5.1431 -4.8397 -1.2432 23 6 6.1317 -6.0099 -1.1910 24 8 6.9032 -5.9284 0.0091 25 6 6.1284 -6.0070 1.2073 26 6 5.1413 -4.8376 1.2526 27 7 2.1524 -1.1512 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6364 2.1398 0.0004 32 1 4.1135 2.1485 0.0010 33 1 6.3257 2.6313 -1.6219 34 1 5.0763 -2.4833 0.0023 35 1 2.6878 -3.6998 -0.8877 36 1 2.6872 -3.6987 0.8922 37 1 2.8006 -6.1965 0.8933 38 1 4.1000 -7.0278 0.0047 39 1 2.9457 -5.6895 -2.1183 40 1 0.6629 -6.1534 -0.0182 41 1 0.4315 -5.6632 -1.7809 42 1 1.5890 -7.7937 -2.5259 43 1 1.8209 -8.2844 -0.7633 44 1 4.5225 -4.9239 -2.1353 45 1 5.6936 -3.8992 -1.2687 46 1 6.7959 -5.9630 -2.0540 47 1 5.5818 -6.9510 -1.2064 48 1 6.7902 -5.9578 2.0720 49 1 5.5782 -6.9478 1.2236 50 1 5.6917 -3.8971 1.2774 51 1 4.5192 -4.9192 2.1440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161656236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:04 Heat of formation + Delta-G solvation = -6.129009 kcal Electronic energy + Delta-G solvation = -29629.480516 eV Core-core repulsion = 25914.476066 eV Total energy + Delta-G solvation = -3715.004451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.32774 -38.46921 -37.40171 -35.66759 -34.11579 -33.26938 -31.09506 -30.73401 -29.59707 -28.16920 -27.69230 -25.89776 -23.78456 -23.66888 -22.66218 -22.33547 -20.92862 -20.60896 -20.54186 -18.27198 -17.20034 -16.40115 -16.17410 -15.95682 -15.43243 -15.33531 -14.90929 -14.82505 -14.58891 -13.84235 -13.80354 -13.57013 -13.41238 -13.20199 -12.77761 -12.67331 -12.45204 -12.09558 -11.89872 -11.66760 -11.60863 -11.54082 -11.43878 -11.39600 -11.32219 -11.23574 -11.11099 -11.07190 -10.79181 -10.49201 -10.27301 -10.20555 -10.02876 -9.80549 -9.74935 -9.22991 -9.22361 -8.76967 -8.02289 -7.82105 -6.76748 -6.43176 -4.17552 2.75288 3.08414 3.10846 3.15157 3.26881 3.78664 3.94262 3.95078 4.41336 4.50025 4.70097 4.75696 4.87200 4.93645 4.98424 5.02605 5.10027 5.24852 5.31670 5.39355 5.49802 5.58707 5.64106 5.69695 5.70007 5.75740 5.81750 5.90154 5.90686 5.93654 6.08167 6.11115 6.14188 6.16551 6.22474 6.33715 6.44471 6.46734 6.47569 6.52908 6.54578 6.60056 6.86254 7.00074 7.15881 7.25248 7.26426 7.70328 7.83031 8.05121 8.33190 8.58501 8.70490 8.82800 9.05503 9.84644 10.23769 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009525 B = 0.004737 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.040298 B = 5909.461964 C = 8251.929176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.025 3.975 3 C -0.187 4.187 4 C -0.124 4.124 5 C 0.029 3.971 6 C -0.455 4.455 7 H 0.073 0.927 8 C 0.076 3.924 9 N -0.799 5.799 10 Si 0.903 3.097 11 H -0.271 1.271 12 H -0.277 1.277 13 H -0.262 1.262 14 C 0.310 3.690 15 N -0.729 5.729 16 C 0.162 3.838 17 C -0.066 4.066 18 C -0.078 4.078 19 C -0.149 4.149 20 C -0.175 4.175 21 C -0.187 4.187 22 C -0.147 4.147 23 C 0.061 3.939 24 O -0.383 6.383 25 C 0.061 3.939 26 C -0.146 4.146 27 N -0.528 5.528 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.279 0.721 34 H 0.401 0.599 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.079 0.921 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 -14.377 1.074 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C -0.210 4.210 4 C -0.150 4.150 5 C 0.022 3.978 6 C -0.487 4.487 7 H 0.091 0.909 8 C -0.140 4.140 9 N -0.425 5.425 10 Si 0.728 3.272 11 H -0.196 1.196 12 H -0.202 1.202 13 H -0.186 1.186 14 C 0.072 3.928 15 N -0.369 5.369 16 C 0.037 3.963 17 C -0.066 4.066 18 C -0.116 4.116 19 C -0.167 4.167 20 C -0.212 4.212 21 C -0.224 4.224 22 C -0.185 4.185 23 C -0.016 4.016 24 O -0.302 6.302 25 C -0.016 4.016 26 C -0.184 4.184 27 N -0.246 5.246 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.239 0.761 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.107 0.893 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.066 0.934 50 H 0.097 0.903 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.699 -14.984 0.935 15.254 hybrid contribution 1.312 1.074 0.028 1.696 sum -1.387 -13.910 0.962 14.012 Atomic orbital electron populations 1.20277 0.91947 1.00658 1.00194 1.19948 0.94218 0.88066 1.08656 1.21208 0.95363 0.96590 1.07821 1.21321 0.92082 0.98181 1.03415 1.17909 0.93844 0.90138 0.95900 1.19095 0.90758 1.02855 1.35947 0.90940 1.25779 1.00599 0.94909 0.92734 1.69811 1.38351 1.11293 1.23093 0.86391 0.82472 0.78243 0.80112 1.19585 1.20218 1.18575 1.18428 0.87876 0.85610 1.00894 1.43809 1.07401 1.01269 1.84460 1.20856 0.92248 0.82404 1.00789 1.20807 0.95178 0.95531 0.95088 1.21262 0.97230 0.96804 0.96264 1.22401 0.92927 1.01080 1.00277 1.22991 0.95054 1.00585 1.02526 1.22953 1.05756 0.91763 1.01908 1.22327 0.97966 1.00072 0.98089 1.22638 0.94229 0.97220 0.87507 1.87928 1.34012 1.94461 1.13784 1.22600 0.94220 0.97060 0.87711 1.22248 0.98070 1.00149 0.97915 1.66358 1.08374 1.29699 1.20180 0.93353 0.92996 0.92851 0.88929 0.85814 0.91045 0.76063 0.92850 0.93588 0.91579 0.91395 0.87433 0.88883 0.88961 0.89211 0.89220 0.90558 0.90266 0.89281 0.93215 0.89247 0.93377 0.90259 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.15 36.01 0.37 -0.98 16 2 C 0.03 0.59 6.79 -82.37 -0.56 0.03 16 3 C -0.19 -4.49 9.69 -39.50 -0.38 -4.87 16 4 C -0.12 -3.24 8.79 -38.62 -0.34 -3.57 16 5 C 0.03 0.76 5.59 -106.47 -0.60 0.17 16 6 C -0.46 -11.62 8.52 -37.89 -0.32 -11.95 16 7 H 0.07 1.76 6.70 -52.49 -0.35 1.41 16 8 C 0.08 1.89 5.19 -17.32 -0.09 1.80 16 9 N -0.80 -20.53 10.95 55.55 0.61 -19.92 16 10 Si 0.90 18.60 29.59 -169.99 -5.03 13.57 16 11 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 12 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 13 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 14 C 0.31 7.56 7.52 -155.02 -1.17 6.39 16 15 N -0.73 -14.80 4.97 -59.97 -0.30 -15.10 16 16 C 0.16 2.73 4.34 -4.04 -0.02 2.71 16 17 C -0.07 -0.85 0.31 -154.33 -0.05 -0.90 16 18 C -0.08 -0.85 4.00 -26.73 -0.11 -0.95 16 19 C -0.15 -1.62 4.26 -90.62 -0.39 -2.01 16 20 C -0.17 -1.89 10.18 -26.73 -0.27 -2.16 16 21 C -0.19 -1.77 10.25 -26.73 -0.27 -2.04 16 22 C -0.15 -1.93 4.61 -26.49 -0.12 -2.05 16 23 C 0.06 0.71 6.57 37.30 0.25 0.96 16 24 O -0.38 -5.18 10.77 -35.23 -0.38 -5.56 16 25 C 0.06 0.70 6.57 37.20 0.24 0.94 16 26 C -0.15 -1.88 4.79 -26.60 -0.13 -2.00 16 27 N -0.53 -12.74 9.44 -8.11 -0.08 -12.81 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.12 3.32 6.26 -52.49 -0.33 2.99 16 33 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 34 H 0.40 8.04 4.34 -40.82 -0.18 7.86 16 35 H 0.05 0.96 7.21 -51.93 -0.37 0.59 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 38 H 0.07 0.68 5.01 -51.93 -0.26 0.42 16 39 H 0.11 1.26 6.03 -51.93 -0.31 0.95 16 40 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.97 6.06 -51.93 -0.31 0.65 16 45 H 0.08 1.23 6.79 -51.93 -0.35 0.88 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.51 6.60 -51.93 -0.34 0.17 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.05 0.48 6.60 -51.93 -0.34 0.14 16 50 H 0.08 1.19 6.79 -51.93 -0.35 0.84 16 51 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -28.20 387.15 -11.41 -39.61 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -8.12 Total: 14.87 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -3.95 Total: -20.49 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.23 Total: -47.83 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.38 Total: -5.56 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.20 -11.41 -39.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161656236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.482 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds