Wall clock time and date at job start Tue Mar 31 2020 15:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38681 * 119.27635 * 2 1 4 4 C 1.38010 * 119.62414 * 179.97438 * 3 2 1 5 5 C 1.40997 * 118.27891 * 359.75105 * 4 3 2 6 6 C 1.41024 * 120.70282 * 180.24615 * 5 4 3 7 7 H 1.07997 * 120.00134 * 154.91801 * 6 5 4 8 8 C 1.39948 * 120.00058 * 334.91510 * 6 5 4 9 9 N 1.30871 * 120.00113 * 343.58709 * 8 6 5 10 10 Si 1.86798 * 120.00049 * 163.58424 * 8 6 5 11 11 H 1.48507 * 109.46969 * 90.00283 * 10 8 6 12 12 H 1.48500 * 109.47122 * 209.99894 * 10 8 6 13 13 H 1.48501 * 109.47454 * 330.00200 * 10 8 6 14 14 C 1.41702 * 118.59252 * 0.48955 * 5 4 3 15 15 N 1.38097 * 119.90702 * 179.78018 * 14 5 4 16 16 C 1.46500 * 120.00125 * 179.72464 * 15 14 5 17 17 C 1.53001 * 109.46955 * 180.02562 * 16 15 14 18 18 C 1.53008 * 109.54177 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47080 * 59.99564 * 18 17 16 20 20 C 1.53005 * 117.49481 * 243.62214 * 19 18 17 21 21 C 1.52997 * 117.49464 * 175.00483 * 19 18 17 22 22 C 1.53175 * 109.54060 * 300.16970 * 17 16 15 23 23 C 1.53282 * 109.06165 * 176.85248 * 22 17 16 24 24 O 1.42898 * 109.46530 * 302.45080 * 23 22 17 25 25 C 1.42909 * 114.09906 * 61.15613 * 24 23 22 26 26 C 1.53092 * 109.41039 * 298.84699 * 25 24 23 27 27 N 1.31971 * 119.27307 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46686 * 270.02190 * 1 2 3 29 29 H 1.09003 * 109.47313 * 30.01894 * 1 2 3 30 30 H 1.08996 * 109.47409 * 150.02285 * 1 2 3 31 31 H 1.08000 * 120.18320 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.85393 * 180.02562 * 4 3 2 33 33 H 0.96991 * 120.00475 * 179.97438 * 9 8 6 34 34 H 0.97000 * 119.99627 * 359.72128 * 15 14 5 35 35 H 1.08992 * 109.47458 * 59.99389 * 16 15 14 36 36 H 1.09001 * 109.46662 * 299.99628 * 16 15 14 37 37 H 1.09005 * 109.46632 * 299.99717 * 18 17 16 38 38 H 1.08991 * 109.47020 * 179.97438 * 18 17 16 39 39 H 1.08996 * 115.55196 * 29.33046 * 19 18 17 40 40 H 1.08991 * 117.50456 * 0.02562 * 20 19 18 41 41 H 1.09000 * 117.49514 * 145.02246 * 20 19 18 42 42 H 1.09004 * 117.49609 * 214.97777 * 21 19 18 43 43 H 1.08999 * 117.50080 * 359.97438 * 21 19 18 44 44 H 1.08997 * 109.52925 * 296.84415 * 22 17 16 45 45 H 1.09003 * 109.51879 * 57.04059 * 22 17 16 46 46 H 1.09004 * 109.46117 * 182.44891 * 23 22 17 47 47 H 1.09006 * 109.46773 * 62.45416 * 23 22 17 48 48 H 1.08999 * 109.47992 * 178.86152 * 25 24 23 49 49 H 1.08999 * 109.48869 * 58.82696 * 25 24 23 50 50 H 1.08999 * 109.52284 * 297.69561 * 26 25 24 51 51 H 1.09010 * 109.57071 * 177.54674 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2181 0.0005 5 6 4.2408 -0.0196 0.0065 6 6 5.6501 -0.0706 0.0125 7 1 6.1574 -0.9357 0.4133 8 6 6.3913 0.9997 -0.5009 9 7 5.8121 1.8893 -1.2663 10 14 8.2074 1.1587 -0.0936 11 1 9.0087 0.4375 -1.1150 12 1 8.5896 2.5936 -0.0874 13 1 8.4678 0.5712 1.2452 14 6 3.4737 -1.2109 0.0010 15 7 4.1073 -2.4379 0.0020 16 6 3.3162 -3.6709 0.0024 17 6 4.2549 -4.8791 0.0041 18 6 3.4302 -6.1680 0.0039 19 6 2.5492 -6.2095 -1.2463 20 6 1.0328 -6.1937 -1.0427 21 6 1.7311 -7.4788 -1.4920 22 6 5.1431 -4.8397 -1.2432 23 6 6.1317 -6.0099 -1.1910 24 8 6.9032 -5.9284 0.0091 25 6 6.1284 -6.0070 1.2073 26 6 5.1413 -4.8376 1.2526 27 7 2.1524 -1.1512 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6364 2.1398 0.0004 32 1 4.1135 2.1485 0.0010 33 1 6.3257 2.6313 -1.6219 34 1 5.0763 -2.4833 0.0023 35 1 2.6878 -3.6998 -0.8877 36 1 2.6872 -3.6987 0.8922 37 1 2.8006 -6.1965 0.8933 38 1 4.1000 -7.0278 0.0047 39 1 2.9457 -5.6895 -2.1183 40 1 0.6629 -6.1534 -0.0182 41 1 0.4315 -5.6632 -1.7809 42 1 1.5890 -7.7937 -2.5259 43 1 1.8209 -8.2844 -0.7633 44 1 4.5225 -4.9239 -2.1353 45 1 5.6936 -3.8992 -1.2687 46 1 6.7959 -5.9630 -2.0540 47 1 5.5818 -6.9510 -1.2064 48 1 6.7902 -5.9578 2.0720 49 1 5.5782 -6.9478 1.2236 50 1 5.6917 -3.8971 1.2774 51 1 4.5192 -4.9192 2.1440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161656236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:03 Heat of formation + Delta-G solvation = -19.409267 kcal Electronic energy + Delta-G solvation = -29630.056391 eV Core-core repulsion = 25914.476066 eV Total energy + Delta-G solvation = -3715.580326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.41199 -40.26727 -38.29394 -36.96474 -35.97080 -34.71401 -32.58354 -32.07679 -31.28796 -29.55384 -29.04255 -27.31476 -25.49999 -24.67843 -23.87378 -23.16003 -22.50083 -22.35942 -21.69528 -19.31838 -19.11220 -17.95148 -17.46145 -16.98317 -16.93088 -16.58937 -16.12842 -15.93065 -15.76104 -15.58658 -15.17555 -15.09757 -14.65471 -14.37596 -14.19304 -14.06585 -13.82130 -13.60918 -13.36803 -13.17487 -13.14836 -12.96041 -12.75983 -12.64656 -12.52773 -12.36926 -12.28221 -12.26843 -12.16896 -12.09949 -11.63535 -11.28005 -11.18337 -11.08357 -10.92945 -10.71030 -10.51256 -10.22726 -9.93135 -9.73855 -8.63722 -8.25845 -6.11383 0.92114 1.24099 1.38264 1.47545 1.53090 2.21228 2.78410 2.86206 2.97153 3.02751 3.53185 3.72174 3.78268 3.79974 3.99619 4.08425 4.12754 4.15134 4.20446 4.32453 4.38086 4.47028 4.52509 4.55477 4.72701 4.73912 4.76010 4.77519 4.82073 4.84627 4.87457 4.90455 4.98281 5.02358 5.05588 5.08330 5.10531 5.14115 5.18264 5.24018 5.25983 5.30599 5.32498 5.41338 5.44949 5.52048 5.82147 5.91394 6.14881 6.32430 6.43707 6.78819 6.86314 6.93319 7.18475 7.96787 8.39237 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009525 B = 0.004737 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.040298 B = 5909.461964 C = 8251.929176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.022 3.978 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.006 4.006 6 C -0.479 4.479 7 H 0.074 0.926 8 C 0.036 3.964 9 N -0.832 5.832 10 Si 0.974 3.026 11 H -0.264 1.264 12 H -0.270 1.270 13 H -0.260 1.260 14 C 0.302 3.698 15 N -0.722 5.722 16 C 0.169 3.831 17 C -0.055 4.055 18 C -0.068 4.068 19 C -0.160 4.160 20 C -0.189 4.189 21 C -0.165 4.165 22 C -0.145 4.145 23 C 0.064 3.936 24 O -0.403 6.403 25 C 0.062 3.938 26 C -0.145 4.145 27 N -0.539 5.539 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.284 0.716 34 H 0.401 0.599 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.100 0.900 49 H 0.073 0.927 50 H 0.050 0.950 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 -16.682 1.425 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C -0.225 4.225 4 C -0.172 4.172 5 C -0.013 4.013 6 C -0.510 4.510 7 H 0.092 0.908 8 C -0.177 4.177 9 N -0.460 5.460 10 Si 0.796 3.204 11 H -0.189 1.189 12 H -0.194 1.194 13 H -0.184 1.184 14 C 0.063 3.937 15 N -0.361 5.361 16 C 0.045 3.955 17 C -0.056 4.056 18 C -0.106 4.106 19 C -0.178 4.178 20 C -0.226 4.226 21 C -0.202 4.202 22 C -0.182 4.182 23 C -0.012 4.012 24 O -0.322 6.322 25 C -0.014 4.014 26 C -0.183 4.183 27 N -0.258 5.258 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.239 0.761 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.118 0.882 49 H 0.091 0.909 50 H 0.069 0.931 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.825 -17.319 1.286 17.595 hybrid contribution 1.217 1.791 -0.098 2.168 sum -1.608 -15.527 1.188 15.655 Atomic orbital electron populations 1.20329 0.88306 1.02061 1.01801 1.20788 0.96713 0.87526 1.06241 1.21456 0.94746 0.98078 1.08171 1.21345 0.93253 0.97724 1.04899 1.18248 0.94705 0.90994 0.97311 1.19289 0.90965 1.03783 1.37001 0.90777 1.26582 1.04914 0.94190 0.92051 1.69878 1.40204 1.11962 1.23929 0.85316 0.76879 0.78430 0.79797 1.18935 1.19440 1.18373 1.18741 0.88261 0.86636 1.00028 1.43935 1.07620 1.01310 1.83232 1.20909 0.92578 0.82541 0.99476 1.20716 0.94690 0.94880 0.95284 1.21201 0.97185 0.95713 0.96479 1.22360 0.92902 1.02617 0.99930 1.23019 0.94963 1.02141 1.02457 1.23018 1.03207 0.91176 1.02797 1.22283 0.98166 0.99501 0.98297 1.22697 0.94012 0.97155 0.87374 1.87910 1.35086 1.94544 1.14679 1.22704 0.94097 0.97105 0.87481 1.22228 0.98303 0.99741 0.98028 1.66540 1.08093 1.30164 1.21008 0.91499 0.90814 0.92227 0.86719 0.87431 0.90504 0.76127 0.94130 0.94641 0.91140 0.89467 0.88562 0.88884 0.89773 0.88346 0.87711 0.90270 0.93415 0.88543 0.90902 0.88186 0.90910 0.93106 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 10.15 71.24 0.72 -1.64 16 2 C 0.02 1.00 6.79 42.65 0.29 1.29 16 3 C -0.20 -9.82 9.69 22.32 0.22 -9.61 16 4 C -0.15 -7.93 8.79 22.89 0.20 -7.73 16 5 C -0.01 -0.30 5.59 -21.06 -0.12 -0.42 16 6 C -0.48 -25.48 8.52 23.37 0.20 -25.28 16 7 H 0.07 3.76 6.70 -2.91 -0.02 3.74 16 8 C 0.04 1.84 5.19 85.25 0.44 2.28 16 9 N -0.83 -44.24 10.95 21.83 0.24 -44.00 16 10 Si 0.97 38.88 29.59 68.60 2.03 40.91 16 11 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 12 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 13 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 14 C 0.30 15.25 7.52 134.05 1.01 16.26 16 15 N -0.72 -30.44 4.97 -343.66 -1.71 -32.15 16 16 C 0.17 5.78 4.34 86.38 0.38 6.16 16 17 C -0.06 -1.40 0.31 -52.06 -0.02 -1.41 16 18 C -0.07 -1.33 4.00 30.60 0.12 -1.21 16 19 C -0.16 -3.22 4.26 -10.79 -0.05 -3.26 16 20 C -0.19 -3.84 10.18 30.60 0.31 -3.53 16 21 C -0.17 -2.67 10.25 30.59 0.31 -2.35 16 22 C -0.14 -3.76 4.61 30.75 0.14 -3.62 16 23 C 0.06 1.38 6.57 72.08 0.47 1.86 16 24 O -0.40 -10.18 10.77 -148.98 -1.60 -11.79 16 25 C 0.06 1.29 6.57 72.01 0.47 1.77 16 26 C -0.15 -3.62 4.79 30.68 0.15 -3.47 16 27 N -0.54 -26.36 9.44 -179.57 -1.70 -28.05 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.11 6.08 6.26 -2.91 -0.02 6.07 16 33 H 0.28 13.80 8.30 -92.72 -0.77 13.03 16 34 H 0.40 16.90 4.34 -92.71 -0.40 16.50 16 35 H 0.04 1.50 7.21 -2.39 -0.02 1.48 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.35 7.88 -2.38 -0.02 1.33 16 38 H 0.09 1.40 5.01 -2.39 -0.01 1.39 16 39 H 0.10 2.17 6.03 -2.39 -0.01 2.16 16 40 H 0.09 1.87 8.03 -2.39 -0.02 1.85 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.99 6.06 -2.39 -0.01 1.97 16 45 H 0.05 1.54 6.79 -2.39 -0.02 1.52 16 46 H 0.10 1.93 8.14 -2.38 -0.02 1.92 16 47 H 0.07 1.26 6.60 -2.38 -0.02 1.24 16 48 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.07 1.17 6.60 -2.39 -0.02 1.16 16 50 H 0.05 1.56 6.79 -2.39 -0.02 1.54 16 51 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -63.04 387.15 3.05 -59.99 By element: Atomic # 1 Polarization: 48.49 SS G_CDS: 0.53 Total: 49.02 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 5.26 Total: -33.93 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.16 Total: -104.21 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.60 Total: -11.79 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -63.04 3.05 -59.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161656236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.579 kcal (2) G-P(sol) polarization free energy of solvation -63.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds