Wall clock time and date at job start Tue Mar 31 2020 15:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31484 * 119.81749 * 2 1 4 4 C 1.32739 * 121.72788 * 180.02562 * 3 2 1 5 5 N 1.38375 * 119.42511 * 179.97438 * 4 3 2 6 6 C 1.46509 * 119.99473 * 180.64689 * 5 4 3 7 7 C 1.52995 * 109.54100 * 299.40134 * 6 5 4 8 8 C 1.53002 * 109.47261 * 296.55086 * 7 6 5 9 9 C 1.53788 * 113.61362 * 274.13760 * 8 7 6 10 10 C 1.53949 * 87.01997 * 220.04713 * 9 8 7 11 11 C 1.53778 * 113.61659 * 176.53344 * 8 7 6 12 12 C 1.53182 * 109.53827 * 179.22778 * 6 5 4 13 13 C 1.53280 * 109.06325 * 297.02441 * 12 6 5 14 14 O 1.42908 * 109.46347 * 302.45270 * 13 12 6 15 15 C 1.42898 * 114.10014 * 61.15371 * 14 13 12 16 16 C 1.53097 * 109.41570 * 298.84533 * 15 14 13 17 17 C 1.39705 * 121.14749 * 359.94987 * 4 3 2 18 18 C 1.36565 * 119.48914 * 0.02987 * 17 4 3 19 19 C 1.40758 * 119.81589 * 179.97438 * 2 1 3 20 20 C 1.41200 * 120.56638 * 0.26905 * 19 2 1 21 21 H 1.07999 * 120.00650 * 335.83268 * 20 19 2 22 22 C 1.39873 * 119.99762 * 155.82954 * 20 19 2 23 23 N 1.30900 * 120.00135 * 342.39565 * 22 20 19 24 24 Si 1.86806 * 119.99858 * 162.39219 * 22 20 19 25 25 H 1.48495 * 109.47113 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47031 * 120.00233 * 24 22 20 27 27 H 1.48498 * 109.46731 * 239.99929 * 24 22 20 28 28 H 1.09006 * 109.46921 * 270.02151 * 1 2 3 29 29 H 1.08998 * 109.47516 * 30.01571 * 1 2 3 30 30 H 1.08997 * 109.47318 * 150.02201 * 1 2 3 31 31 H 0.96995 * 120.00274 * 0.63900 * 5 4 3 32 32 H 1.08997 * 109.47419 * 56.55192 * 7 6 5 33 33 H 1.09000 * 109.47143 * 176.55614 * 7 6 5 34 34 H 1.08997 * 112.85146 * 45.33437 * 8 7 6 35 35 H 1.08998 * 113.61412 * 334.57029 * 9 8 7 36 36 H 1.09006 * 113.61093 * 105.46982 * 9 8 7 37 37 H 1.09000 * 113.54032 * 270.81350 * 10 9 8 38 38 H 1.08999 * 113.74411 * 139.94306 * 10 9 8 39 39 H 1.09003 * 113.61278 * 254.52959 * 11 8 7 40 40 H 1.08998 * 113.61438 * 25.43049 * 11 8 7 41 41 H 1.08997 * 109.52294 * 57.01783 * 12 6 5 42 42 H 1.08994 * 109.52116 * 177.20842 * 12 6 5 43 43 H 1.08994 * 109.45960 * 182.44937 * 13 12 6 44 44 H 1.09006 * 109.46832 * 62.44926 * 13 12 6 45 45 H 1.08993 * 109.48436 * 178.86333 * 15 14 13 46 46 H 1.08999 * 109.49183 * 58.83229 * 15 14 13 47 47 H 1.08996 * 109.52190 * 297.70220 * 16 15 14 48 48 H 1.08994 * 109.57591 * 177.54365 * 16 15 14 49 49 H 1.07999 * 120.26107 * 180.02562 * 17 4 3 50 50 H 1.08003 * 120.79955 * 179.97438 * 18 17 4 51 51 H 0.97003 * 119.99710 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1850 -0.0005 5 7 4.1267 2.4123 -0.0010 6 6 5.5903 2.4757 -0.0159 7 6 6.1452 1.7844 1.2311 8 6 5.6877 2.5409 2.4798 9 6 6.6040 3.7166 2.8581 10 6 6.4079 3.2927 4.3251 11 6 6.1234 1.8768 3.7966 12 6 6.0395 3.9401 -0.0327 13 6 5.5444 4.6008 -1.3241 14 8 6.0487 3.8810 -2.4510 15 6 5.6226 2.5184 -2.5113 16 6 6.1210 1.7739 -1.2698 17 6 4.2495 0.0141 0.0000 18 6 3.6199 -1.1977 0.0004 19 6 2.2069 -1.2213 0.0005 20 6 1.5090 -2.4488 -0.0046 21 1 0.4988 -2.4973 0.3741 22 6 2.1262 -3.6020 -0.5003 23 7 3.1861 -3.5013 -1.2619 24 14 1.4380 -5.2858 -0.0753 25 1 0.2442 -5.1277 0.7935 26 1 1.0514 -5.9919 -1.3232 27 1 2.4710 -6.0763 0.6410 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 3.6058 3.2304 0.0084 32 1 5.7774 0.7592 1.2723 33 1 7.2344 1.7783 1.1888 34 1 4.6300 2.8030 2.4521 35 1 7.6286 3.6031 2.5041 36 1 6.1801 4.6933 2.6245 37 1 5.5474 3.7616 4.8024 38 1 7.3145 3.3603 4.9264 39 1 5.3121 1.3704 4.3195 40 1 7.0164 1.2594 3.6996 41 1 5.6201 4.4596 0.8288 42 1 7.1277 3.9877 0.0062 43 1 5.8974 5.6312 -1.3633 44 1 4.4545 4.5890 -1.3435 45 1 6.0321 2.0487 -3.4055 46 1 4.5339 2.4789 -2.5461 47 1 7.2108 1.7779 -1.2557 48 1 5.7607 0.7455 -1.2915 49 1 5.3282 0.0668 0.0000 50 1 4.1882 -2.1162 0.0003 51 1 3.6138 -4.3010 -1.6059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161922999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:55 Heat of formation + Delta-G solvation = 10.083754 kcal Electronic energy + Delta-G solvation = -30128.786022 eV Core-core repulsion = 26414.484610 eV Total energy + Delta-G solvation = -3714.301413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.49772 -38.45451 -38.26428 -35.76750 -33.87710 -31.99280 -31.34375 -30.68492 -29.29013 -29.06870 -26.84624 -25.64693 -24.61483 -24.50214 -23.11084 -21.74487 -21.23445 -20.56440 -19.21702 -18.73872 -17.31301 -16.67285 -16.07203 -15.82287 -15.48021 -15.21079 -15.10311 -14.62305 -14.58805 -14.24430 -13.67639 -13.32216 -13.28696 -12.85574 -12.72667 -12.44662 -12.37982 -12.20677 -11.95729 -11.77352 -11.57386 -11.54460 -11.43809 -11.26770 -11.15912 -11.05768 -11.02083 -10.81868 -10.68492 -10.53951 -10.40237 -10.21709 -10.01082 -9.83291 -9.51551 -9.34504 -9.16488 -8.56334 -8.10071 -7.95774 -6.81015 -6.55430 -4.15843 2.73342 2.96889 3.09106 3.14094 3.30609 3.95453 4.01139 4.10303 4.64890 4.68171 4.73528 4.77130 4.88066 4.92686 5.07327 5.13534 5.26921 5.36672 5.57144 5.63541 5.66876 5.67557 5.72514 5.78249 5.82700 5.83117 5.89398 5.95959 6.00271 6.02717 6.08703 6.13391 6.23715 6.26871 6.31488 6.33105 6.42144 6.48790 6.61938 6.66666 6.69748 6.70466 6.82749 7.06855 7.23215 7.36865 7.40668 7.50136 7.77147 7.91985 8.30603 8.45688 8.68372 8.86493 8.95327 9.77237 10.23480 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.003920 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.324375 B = 7141.386768 C = 7953.989759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.035 3.965 3 N -0.522 5.522 4 C 0.292 3.708 5 N -0.732 5.732 6 C 0.206 3.794 7 C -0.134 4.134 8 C -0.095 4.095 9 C -0.138 4.138 10 C -0.144 4.144 11 C -0.139 4.139 12 C -0.154 4.154 13 C 0.061 3.939 14 O -0.388 6.388 15 C 0.068 3.932 16 C -0.181 4.181 17 C -0.220 4.220 18 C -0.095 4.095 19 C 0.033 3.967 20 C -0.453 4.453 21 H 0.079 0.921 22 C 0.075 3.925 23 N -0.805 5.805 24 Si 0.903 3.097 25 H -0.261 1.261 26 H -0.276 1.276 27 H -0.274 1.274 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.385 0.615 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.100 0.900 49 H 0.116 0.884 50 H 0.125 0.875 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.650 10.350 4.196 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 N -0.238 5.238 4 C 0.060 3.940 5 N -0.371 5.371 6 C 0.117 3.883 7 C -0.173 4.173 8 C -0.113 4.113 9 C -0.175 4.175 10 C -0.181 4.181 11 C -0.177 4.177 12 C -0.192 4.192 13 C -0.016 4.016 14 O -0.307 6.307 15 C -0.008 4.008 16 C -0.220 4.220 17 C -0.243 4.243 18 C -0.121 4.121 19 C 0.028 3.972 20 C -0.485 4.485 21 H 0.097 0.903 22 C -0.141 4.141 23 N -0.432 5.432 24 Si 0.728 3.272 25 H -0.185 1.185 26 H -0.202 1.202 27 H -0.199 1.199 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.219 0.781 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.118 0.882 49 H 0.133 0.867 50 H 0.143 0.857 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.597 10.950 3.916 13.890 hybrid contribution -0.029 -1.563 0.344 1.600 sum 7.568 9.387 4.260 12.788 Atomic orbital electron populations 1.20240 0.91427 1.00976 1.00113 1.20677 0.94555 0.87436 1.07698 1.66306 1.07466 1.31210 1.18843 1.17588 0.87985 0.84982 1.03491 1.43759 1.02802 1.04718 1.85796 1.19813 0.81108 0.93903 0.93449 1.22323 0.99451 1.01834 0.93650 1.22391 0.99832 0.95526 0.93552 1.23138 0.99949 0.98387 0.96039 1.22834 1.01198 0.97518 0.96583 1.22919 1.01264 0.96110 0.97362 1.22549 1.02098 0.95719 0.98785 1.22562 0.98160 0.95243 0.85618 1.87860 1.73650 1.23768 1.45456 1.22473 0.99531 0.81178 0.97662 1.22942 1.00720 1.02761 0.95561 1.21261 0.98856 0.92846 1.11351 1.21312 0.94872 0.96266 0.99666 1.18147 0.92247 0.93017 0.93751 1.19376 1.00862 0.91919 1.36309 0.90281 1.25839 0.94402 1.01194 0.92696 1.69830 1.18390 1.31161 1.23784 0.86339 0.80002 0.81670 0.79180 1.18463 1.20161 1.19915 0.93575 0.93540 0.91454 0.78063 0.89061 0.92129 0.88925 0.90479 0.91890 0.90629 0.92055 0.91784 0.90491 0.89960 0.90316 0.89517 0.93133 0.89545 0.92458 0.91374 0.88191 0.86665 0.85719 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 9.58 36.01 0.34 -1.13 16 2 C 0.03 0.85 6.86 -81.79 -0.56 0.29 16 3 N -0.52 -12.23 10.29 -8.04 -0.08 -12.32 16 4 C 0.29 6.17 7.25 -155.12 -1.12 5.05 16 5 N -0.73 -12.18 3.66 -47.49 -0.17 -12.35 16 6 C 0.21 2.85 0.35 -131.63 -0.05 2.81 16 7 C -0.13 -1.83 3.86 -26.73 -0.10 -1.94 16 8 C -0.09 -1.20 3.02 -89.80 -0.27 -1.47 16 9 C -0.14 -1.42 5.95 -25.83 -0.15 -1.58 16 10 C -0.14 -1.49 8.09 -25.83 -0.21 -1.70 16 11 C -0.14 -1.69 7.64 -25.92 -0.20 -1.89 16 12 C -0.15 -1.76 3.89 -26.49 -0.10 -1.87 16 13 C 0.06 0.74 6.67 37.30 0.25 0.99 16 14 O -0.39 -5.67 10.77 -35.23 -0.38 -6.05 16 15 C 0.07 1.02 6.68 37.21 0.25 1.27 16 16 C -0.18 -2.68 4.58 -26.59 -0.12 -2.80 16 17 C -0.22 -4.77 6.58 -39.64 -0.26 -5.03 16 18 C -0.09 -2.34 8.74 -39.01 -0.34 -2.69 16 19 C 0.03 0.86 5.59 -106.65 -0.60 0.27 16 20 C -0.45 -11.63 8.17 -37.85 -0.31 -11.94 16 21 H 0.08 1.96 6.81 -52.49 -0.36 1.60 16 22 C 0.07 1.83 5.17 -17.34 -0.09 1.74 16 23 N -0.80 -20.31 10.94 55.54 0.61 -19.70 16 24 Si 0.90 18.44 29.59 -169.99 -5.03 13.41 16 25 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 26 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.41 6.73 -51.93 -0.35 1.06 16 31 H 0.39 6.26 7.67 -40.82 -0.31 5.95 16 32 H 0.09 1.49 4.66 -51.93 -0.24 1.25 16 33 H 0.06 0.74 7.87 -51.93 -0.41 0.34 16 34 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 35 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 36 H 0.06 0.61 7.01 -51.93 -0.36 0.25 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.90 8.10 -51.93 -0.42 0.47 16 41 H 0.08 0.87 5.51 -51.93 -0.29 0.59 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.64 7.11 -51.93 -0.37 0.27 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.06 0.98 7.75 -51.93 -0.40 0.58 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.10 1.71 4.65 -51.93 -0.24 1.47 16 49 H 0.12 2.23 3.38 -52.49 -0.18 2.05 16 50 H 0.13 3.20 6.22 -52.48 -0.33 2.87 16 51 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -26.93 375.77 -11.04 -37.97 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -8.00 Total: 14.99 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -3.65 Total: -21.62 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.35 Total: -44.37 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.38 Total: -6.05 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -26.93 -11.04 -37.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161922999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.057 kcal (2) G-P(sol) polarization free energy of solvation -26.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds