Wall clock time and date at job start Tue Mar 31 2020 15:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31484 * 119.81749 * 2 1 4 4 C 1.32739 * 121.72788 * 180.02562 * 3 2 1 5 5 N 1.38375 * 119.42511 * 179.97438 * 4 3 2 6 6 C 1.46509 * 119.99473 * 180.64689 * 5 4 3 7 7 C 1.52995 * 109.54100 * 299.40134 * 6 5 4 8 8 C 1.53002 * 109.47261 * 296.55086 * 7 6 5 9 9 C 1.53788 * 113.61362 * 274.13760 * 8 7 6 10 10 C 1.53949 * 87.01997 * 220.04713 * 9 8 7 11 11 C 1.53778 * 113.61659 * 176.53344 * 8 7 6 12 12 C 1.53182 * 109.53827 * 179.22778 * 6 5 4 13 13 C 1.53280 * 109.06325 * 297.02441 * 12 6 5 14 14 O 1.42908 * 109.46347 * 302.45270 * 13 12 6 15 15 C 1.42898 * 114.10014 * 61.15371 * 14 13 12 16 16 C 1.53097 * 109.41570 * 298.84533 * 15 14 13 17 17 C 1.39705 * 121.14749 * 359.94987 * 4 3 2 18 18 C 1.36565 * 119.48914 * 0.02987 * 17 4 3 19 19 C 1.40758 * 119.81589 * 179.97438 * 2 1 3 20 20 C 1.41200 * 120.56638 * 0.26905 * 19 2 1 21 21 H 1.07999 * 120.00650 * 335.83268 * 20 19 2 22 22 C 1.39873 * 119.99762 * 155.82954 * 20 19 2 23 23 N 1.30900 * 120.00135 * 342.39565 * 22 20 19 24 24 Si 1.86806 * 119.99858 * 162.39219 * 22 20 19 25 25 H 1.48495 * 109.47113 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47031 * 120.00233 * 24 22 20 27 27 H 1.48498 * 109.46731 * 239.99929 * 24 22 20 28 28 H 1.09006 * 109.46921 * 270.02151 * 1 2 3 29 29 H 1.08998 * 109.47516 * 30.01571 * 1 2 3 30 30 H 1.08997 * 109.47318 * 150.02201 * 1 2 3 31 31 H 0.96995 * 120.00274 * 0.63900 * 5 4 3 32 32 H 1.08997 * 109.47419 * 56.55192 * 7 6 5 33 33 H 1.09000 * 109.47143 * 176.55614 * 7 6 5 34 34 H 1.08997 * 112.85146 * 45.33437 * 8 7 6 35 35 H 1.08998 * 113.61412 * 334.57029 * 9 8 7 36 36 H 1.09006 * 113.61093 * 105.46982 * 9 8 7 37 37 H 1.09000 * 113.54032 * 270.81350 * 10 9 8 38 38 H 1.08999 * 113.74411 * 139.94306 * 10 9 8 39 39 H 1.09003 * 113.61278 * 254.52959 * 11 8 7 40 40 H 1.08998 * 113.61438 * 25.43049 * 11 8 7 41 41 H 1.08997 * 109.52294 * 57.01783 * 12 6 5 42 42 H 1.08994 * 109.52116 * 177.20842 * 12 6 5 43 43 H 1.08994 * 109.45960 * 182.44937 * 13 12 6 44 44 H 1.09006 * 109.46832 * 62.44926 * 13 12 6 45 45 H 1.08993 * 109.48436 * 178.86333 * 15 14 13 46 46 H 1.08999 * 109.49183 * 58.83229 * 15 14 13 47 47 H 1.08996 * 109.52190 * 297.70220 * 16 15 14 48 48 H 1.08994 * 109.57591 * 177.54365 * 16 15 14 49 49 H 1.07999 * 120.26107 * 180.02562 * 17 4 3 50 50 H 1.08003 * 120.79955 * 179.97438 * 18 17 4 51 51 H 0.97003 * 119.99710 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1850 -0.0005 5 7 4.1267 2.4123 -0.0010 6 6 5.5903 2.4757 -0.0159 7 6 6.1452 1.7844 1.2311 8 6 5.6877 2.5409 2.4798 9 6 6.6040 3.7166 2.8581 10 6 6.4079 3.2927 4.3251 11 6 6.1234 1.8768 3.7966 12 6 6.0395 3.9401 -0.0327 13 6 5.5444 4.6008 -1.3241 14 8 6.0487 3.8810 -2.4510 15 6 5.6226 2.5184 -2.5113 16 6 6.1210 1.7739 -1.2698 17 6 4.2495 0.0141 0.0000 18 6 3.6199 -1.1977 0.0004 19 6 2.2069 -1.2213 0.0005 20 6 1.5090 -2.4488 -0.0046 21 1 0.4988 -2.4973 0.3741 22 6 2.1262 -3.6020 -0.5003 23 7 3.1861 -3.5013 -1.2619 24 14 1.4380 -5.2858 -0.0753 25 1 0.2442 -5.1277 0.7935 26 1 1.0514 -5.9919 -1.3232 27 1 2.4710 -6.0763 0.6410 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 3.6058 3.2304 0.0084 32 1 5.7774 0.7592 1.2723 33 1 7.2344 1.7783 1.1888 34 1 4.6300 2.8030 2.4521 35 1 7.6286 3.6031 2.5041 36 1 6.1801 4.6933 2.6245 37 1 5.5474 3.7616 4.8024 38 1 7.3145 3.3603 4.9264 39 1 5.3121 1.3704 4.3195 40 1 7.0164 1.2594 3.6996 41 1 5.6201 4.4596 0.8288 42 1 7.1277 3.9877 0.0062 43 1 5.8974 5.6312 -1.3633 44 1 4.4545 4.5890 -1.3435 45 1 6.0321 2.0487 -3.4055 46 1 4.5339 2.4789 -2.5461 47 1 7.2108 1.7779 -1.2557 48 1 5.7607 0.7455 -1.2915 49 1 5.3282 0.0668 0.0000 50 1 4.1882 -2.1162 0.0003 51 1 3.6138 -4.3010 -1.6059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161922999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:54 Heat of formation + Delta-G solvation = -2.778561 kcal Electronic energy + Delta-G solvation = -30129.343774 eV Core-core repulsion = 26414.484610 eV Total energy + Delta-G solvation = -3714.859164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.74673 -40.00397 -39.34957 -37.11105 -35.62905 -33.52459 -32.94647 -32.00690 -30.92213 -30.15032 -28.60434 -26.58590 -26.28156 -25.59302 -24.27898 -23.02720 -22.74366 -22.27001 -20.24979 -19.95049 -19.15495 -18.19350 -17.25735 -16.98802 -16.85707 -16.70966 -16.22794 -16.05628 -15.84087 -15.56261 -15.20542 -14.91752 -14.41982 -14.26843 -13.97894 -13.82804 -13.58523 -13.43330 -13.33400 -13.25280 -13.07617 -12.98473 -12.91765 -12.79814 -12.58730 -12.52292 -12.22180 -12.14966 -12.09039 -11.70580 -11.58191 -11.37830 -11.17634 -11.14208 -10.95067 -10.73232 -10.51935 -10.13815 -9.85972 -9.79388 -8.61856 -8.28669 -6.04649 0.93753 1.17657 1.40884 1.54047 1.58180 2.25144 2.64161 2.86061 2.97968 3.59565 3.74153 3.80150 3.82936 3.90020 3.99669 4.05013 4.10330 4.16146 4.24739 4.34919 4.46676 4.61203 4.62789 4.67527 4.73117 4.74023 4.78535 4.83400 4.86490 4.88625 4.93072 4.99529 5.00421 5.05542 5.07595 5.09889 5.13029 5.16718 5.23284 5.24152 5.25671 5.33587 5.42499 5.54849 5.60077 5.71726 5.73693 5.96863 6.06102 6.26581 6.56217 6.73473 6.91084 6.99845 7.22852 7.96533 8.43194 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.003920 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.324375 B = 7141.386768 C = 7953.989759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.016 3.984 3 N -0.540 5.540 4 C 0.306 3.694 5 N -0.719 5.719 6 C 0.202 3.798 7 C -0.129 4.129 8 C -0.099 4.099 9 C -0.123 4.123 10 C -0.137 4.137 11 C -0.147 4.147 12 C -0.143 4.143 13 C 0.055 3.945 14 O -0.395 6.395 15 C 0.073 3.927 16 C -0.179 4.179 17 C -0.217 4.217 18 C -0.113 4.113 19 C -0.002 4.002 20 C -0.484 4.484 21 H 0.078 0.922 22 C 0.035 3.965 23 N -0.838 5.838 24 Si 0.974 3.026 25 H -0.258 1.258 26 H -0.270 1.270 27 H -0.269 1.269 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.390 0.610 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.041 0.959 45 H 0.093 0.907 46 H 0.030 0.970 47 H 0.089 0.911 48 H 0.072 0.928 49 H 0.139 0.861 50 H 0.109 0.891 51 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.289 12.229 4.903 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 N -0.257 5.257 4 C 0.071 3.929 5 N -0.357 5.357 6 C 0.115 3.885 7 C -0.168 4.168 8 C -0.118 4.118 9 C -0.160 4.160 10 C -0.174 4.174 11 C -0.184 4.184 12 C -0.180 4.180 13 C -0.022 4.022 14 O -0.314 6.314 15 C -0.004 4.004 16 C -0.218 4.218 17 C -0.240 4.240 18 C -0.140 4.140 19 C -0.007 4.007 20 C -0.515 4.515 21 H 0.096 0.904 22 C -0.178 4.178 23 N -0.466 5.466 24 Si 0.796 3.204 25 H -0.182 1.182 26 H -0.195 1.195 27 H -0.194 1.194 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.134 0.866 44 H 0.059 0.941 45 H 0.111 0.889 46 H 0.048 0.952 47 H 0.108 0.892 48 H 0.090 0.910 49 H 0.156 0.844 50 H 0.127 0.873 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.248 12.868 4.626 16.508 hybrid contribution -0.442 -1.974 0.120 2.027 sum 8.806 10.894 4.746 14.790 Atomic orbital electron populations 1.20200 0.89573 1.01272 1.00956 1.21157 0.96167 0.87412 1.07408 1.66436 1.08412 1.30796 1.20061 1.17897 0.87612 0.86507 1.00894 1.43863 1.04201 1.03210 1.84382 1.20073 0.79083 0.96123 0.93233 1.22248 1.00637 0.99960 0.93924 1.22325 0.99082 0.97153 0.93223 1.23086 0.99952 0.97618 0.95384 1.22805 1.01892 0.95655 0.97082 1.22981 1.00863 0.97352 0.97250 1.22516 1.03239 0.93246 0.99027 1.22792 0.97825 0.96472 0.85100 1.87861 1.73630 1.23195 1.46707 1.22342 0.97820 0.82023 0.98190 1.22890 1.01962 1.01042 0.95859 1.21476 1.00128 0.92111 1.10305 1.21320 0.94909 0.96810 1.00974 1.18463 0.92940 0.93920 0.95363 1.19558 1.01242 0.92877 1.37837 0.90402 1.26605 0.94644 1.04482 0.92065 1.69891 1.19658 1.32347 1.24675 0.85276 0.79292 0.76910 0.78960 1.18181 1.19517 1.19355 0.92361 0.92363 0.91866 0.77527 0.92296 0.89919 0.91363 0.88981 0.90617 0.90659 0.90516 0.93722 0.89941 0.88485 0.88353 0.86608 0.94078 0.88879 0.95209 0.89238 0.90986 0.84428 0.87317 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.69 9.58 71.24 0.68 -2.01 16 2 C 0.02 0.81 6.86 43.23 0.30 1.10 16 3 N -0.54 -25.82 10.29 -179.36 -1.85 -27.67 16 4 C 0.31 13.13 7.25 133.31 0.97 14.10 16 5 N -0.72 -23.52 3.66 -304.17 -1.11 -24.63 16 6 C 0.20 5.25 0.35 3.72 0.00 5.25 16 7 C -0.13 -3.32 3.86 30.59 0.12 -3.20 16 8 C -0.10 -2.35 3.02 -10.27 -0.03 -2.38 16 9 C -0.12 -2.08 5.95 31.18 0.19 -1.89 16 10 C -0.14 -2.46 8.09 31.18 0.25 -2.21 16 11 C -0.15 -3.39 7.64 31.12 0.24 -3.15 16 12 C -0.14 -2.75 3.89 30.75 0.12 -2.63 16 13 C 0.05 1.15 6.67 72.08 0.48 1.63 16 14 O -0.39 -10.60 10.77 -148.98 -1.60 -12.20 16 15 C 0.07 2.13 6.68 72.01 0.48 2.61 16 16 C -0.18 -5.05 4.58 30.69 0.14 -4.91 16 17 C -0.22 -9.73 6.58 22.23 0.15 -9.58 16 18 C -0.11 -5.91 8.74 22.64 0.20 -5.71 16 19 C 0.00 -0.10 5.59 -21.18 -0.12 -0.22 16 20 C -0.48 -25.87 8.17 23.39 0.19 -25.68 16 21 H 0.08 4.01 6.81 -2.91 -0.02 3.99 16 22 C 0.03 1.75 5.17 85.23 0.44 2.19 16 23 N -0.84 -43.92 10.94 21.82 0.24 -43.68 16 24 Si 0.97 38.67 29.59 68.60 2.03 40.70 16 25 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 26 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 27 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 28 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 2.73 6.73 -2.39 -0.02 2.71 16 31 H 0.39 12.30 7.67 -92.71 -0.71 11.59 16 32 H 0.06 1.92 4.66 -2.39 -0.01 1.90 16 33 H 0.08 1.77 7.87 -2.39 -0.02 1.75 16 34 H 0.07 1.96 7.58 -2.39 -0.02 1.95 16 35 H 0.09 1.34 7.92 -2.39 -0.02 1.32 16 36 H 0.08 1.12 7.01 -2.38 -0.02 1.11 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 41 H 0.10 1.65 5.51 -2.39 -0.01 1.64 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.04 0.95 7.11 -2.38 -0.02 0.94 16 45 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 46 H 0.03 1.02 7.75 -2.39 -0.02 1.00 16 47 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.07 2.47 4.65 -2.39 -0.01 2.46 16 49 H 0.14 5.46 3.38 -2.91 -0.01 5.45 16 50 H 0.11 5.92 6.22 -2.91 -0.02 5.90 16 51 H 0.28 13.51 8.30 -92.71 -0.77 12.75 16 Total: -1.00 -60.95 375.77 2.73 -58.22 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: 0.24 Total: 45.93 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 4.79 Total: -36.67 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -2.72 Total: -95.98 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.60 Total: -12.20 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -60.95 2.73 -58.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161922999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.441 kcal (2) G-P(sol) polarization free energy of solvation -60.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds