Wall clock time and date at job start Tue Mar 31 2020 15:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38672 * 119.27789 * 2 1 4 4 C 1.38011 * 119.63131 * 179.97438 * 3 2 1 5 5 C 1.41002 * 118.27587 * 0.02562 * 4 3 2 6 6 C 1.41022 * 120.70143 * 180.02562 * 5 4 3 7 7 H 1.08006 * 119.99694 * 205.67816 * 6 5 4 8 8 C 1.39946 * 120.00088 * 25.67691 * 6 5 4 9 9 N 1.30863 * 120.00293 * 16.17928 * 8 6 5 10 10 Si 1.86801 * 120.00021 * 196.17116 * 8 6 5 11 11 H 1.48494 * 109.47485 * 265.02110 * 10 8 6 12 12 H 1.48498 * 109.47164 * 25.02479 * 10 8 6 13 13 H 1.48507 * 109.46952 * 145.01903 * 10 8 6 14 14 C 1.41702 * 118.59239 * 0.27301 * 5 4 3 15 15 N 1.38090 * 119.90558 * 179.70705 * 14 5 4 16 16 C 1.46510 * 119.99980 * 176.64727 * 15 14 5 17 17 C 1.52998 * 109.53954 * 301.40249 * 16 15 14 18 18 C 1.53003 * 109.47245 * 305.00160 * 17 16 15 19 19 C 1.53780 * 113.61267 * 274.13919 * 18 17 16 20 20 C 1.53958 * 87.02045 * 220.04756 * 19 18 17 21 21 C 1.53785 * 113.61389 * 176.53176 * 18 17 16 22 22 C 1.53171 * 109.54250 * 181.22607 * 16 15 14 23 23 C 1.53278 * 109.06378 * 297.02491 * 22 16 15 24 24 O 1.42895 * 109.46336 * 302.44860 * 23 22 16 25 25 C 1.42903 * 114.09976 * 61.15767 * 24 23 22 26 26 C 1.53099 * 109.41397 * 298.84350 * 25 24 23 27 27 N 1.31972 * 119.27503 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47167 * 89.99883 * 1 2 3 29 29 H 1.09003 * 109.47473 * 209.99671 * 1 2 3 30 30 H 1.08995 * 109.47587 * 329.99999 * 1 2 3 31 31 H 1.07998 * 120.18815 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.86047 * 179.97438 * 4 3 2 33 33 H 0.97004 * 120.00284 * 180.02562 * 9 8 6 34 34 H 0.96991 * 120.00388 * 356.63773 * 15 14 5 35 35 H 1.09008 * 109.47477 * 65.00087 * 17 16 15 36 36 H 1.09003 * 109.47022 * 185.00140 * 17 16 15 37 37 H 1.09000 * 112.84749 * 45.33177 * 18 17 16 38 38 H 1.09004 * 113.61466 * 334.56697 * 19 18 17 39 39 H 1.08998 * 113.61931 * 105.47206 * 19 18 17 40 40 H 1.09002 * 113.53427 * 270.81265 * 20 19 18 41 41 H 1.09001 * 113.74525 * 139.94020 * 20 19 18 42 42 H 1.09002 * 113.61099 * 254.52688 * 21 18 17 43 43 H 1.08993 * 113.61510 * 25.42988 * 21 18 17 44 44 H 1.09000 * 109.52358 * 57.01598 * 22 16 15 45 45 H 1.08999 * 109.52139 * 177.20417 * 22 16 15 46 46 H 1.09004 * 109.46042 * 182.44880 * 23 22 16 47 47 H 1.09006 * 109.46871 * 62.45297 * 23 22 16 48 48 H 1.08997 * 109.48155 * 178.86256 * 25 24 23 49 49 H 1.08997 * 109.48817 * 58.83130 * 25 24 23 50 50 H 1.09002 * 109.52198 * 297.70201 * 26 25 24 51 51 H 1.08994 * 109.57105 * 177.54325 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2181 0.0005 5 6 4.2408 -0.0195 0.0005 6 6 5.6501 -0.0705 0.0016 7 1 6.1596 -0.9323 -0.4037 8 6 6.3885 0.9955 0.5278 9 7 5.8042 1.8812 1.2937 10 14 8.2083 1.1540 0.1371 11 1 9.0042 0.5294 1.2239 12 1 8.5004 0.4683 -1.1473 13 1 8.5669 2.5907 0.0238 14 6 3.4737 -1.2109 -0.0060 15 7 4.1074 -2.4378 -0.0123 16 6 3.3181 -3.6703 0.0552 17 6 2.4743 -3.6684 1.3315 18 6 3.3840 -3.4603 2.5440 19 6 3.9986 -4.7626 3.0836 20 6 3.7486 -4.2012 4.4952 21 6 2.6216 -3.3579 3.8757 22 6 4.2573 -4.8803 0.0636 23 6 5.0403 -4.9155 -1.2536 24 8 4.1255 -4.9652 -2.3501 25 6 3.2537 -3.8360 -2.4344 26 6 2.3987 -3.7575 -1.1668 27 7 2.1523 -1.1512 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6364 2.1398 0.0004 32 1 4.1135 2.1486 0.0001 33 1 6.3159 2.6204 1.6581 34 1 5.0749 -2.4837 -0.0615 35 1 1.7435 -2.8610 1.2827 36 1 1.9558 -4.6226 1.4257 37 1 4.1119 -2.6628 2.3951 38 1 3.4091 -5.6507 2.8561 39 1 5.0546 -4.8806 2.8404 40 1 4.5773 -3.6070 4.8804 41 1 3.3950 -4.9465 5.2076 42 1 2.5676 -2.3436 4.2709 43 1 1.6549 -3.8613 3.8652 44 1 4.9511 -4.7971 0.9002 45 1 3.6724 -5.7946 0.1639 46 1 5.6791 -5.7985 -1.2728 47 1 5.6561 -4.0196 -1.3342 48 1 2.6053 -3.9415 -3.3042 49 1 3.8457 -2.9259 -2.5304 50 1 1.7763 -4.6492 -1.0914 51 1 1.7637 -2.8726 -1.2089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161923377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:58 Heat of formation + Delta-G solvation = -3.052902 kcal Electronic energy + Delta-G solvation = -30819.680697 eV Core-core repulsion = 27104.809637 eV Total energy + Delta-G solvation = -3714.871061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.11491 -38.28378 -38.12641 -35.32914 -34.16818 -32.10501 -30.92821 -30.42783 -29.04234 -28.75893 -27.47112 -25.40626 -24.34347 -23.93242 -23.12824 -21.51472 -21.22710 -20.63358 -18.95767 -18.61662 -17.25231 -16.38203 -15.84336 -15.62981 -15.46641 -15.07968 -14.92936 -14.42935 -14.28680 -13.88661 -13.82160 -13.38575 -13.06565 -12.78525 -12.70242 -12.39401 -12.23116 -12.09873 -11.90334 -11.69008 -11.58718 -11.51481 -11.39255 -11.26100 -11.14641 -10.95960 -10.85752 -10.78592 -10.53030 -10.46415 -10.16356 -10.06466 -9.80603 -9.73398 -9.54439 -9.26588 -9.22771 -8.67122 -7.98272 -7.80094 -6.80542 -6.48327 -4.21992 2.70690 3.04545 3.06449 3.10198 3.21067 3.90405 4.18930 4.34523 4.65941 4.93297 4.97277 5.01771 5.11580 5.16310 5.29220 5.37701 5.51274 5.54663 5.66401 5.70770 5.80945 5.87067 5.93336 5.95356 5.97463 6.03501 6.09415 6.12321 6.13838 6.20831 6.22336 6.34184 6.38404 6.40309 6.41663 6.48980 6.54997 6.55997 6.65474 6.77302 6.82803 6.94820 7.00912 7.06514 7.11281 7.25759 7.53546 7.66934 7.78931 8.00452 8.28656 8.51997 8.66439 8.78628 9.01662 9.78629 10.19501 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008439 B = 0.005436 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.323586 B = 5150.053338 C = 5361.459036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.025 3.975 3 C -0.186 4.186 4 C -0.122 4.122 5 C 0.029 3.971 6 C -0.455 4.455 7 H 0.071 0.929 8 C 0.077 3.923 9 N -0.798 5.798 10 Si 0.902 3.098 11 H -0.272 1.272 12 H -0.262 1.262 13 H -0.277 1.277 14 C 0.317 3.683 15 N -0.719 5.719 16 C 0.206 3.794 17 C -0.114 4.114 18 C -0.095 4.095 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.159 4.159 23 C 0.062 3.938 24 O -0.391 6.391 25 C 0.066 3.934 26 C -0.163 4.163 27 N -0.519 5.519 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.278 0.722 34 H 0.399 0.601 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.050 0.950 48 H 0.081 0.919 49 H 0.054 0.946 50 H 0.058 0.942 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -9.328 0.647 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 C -0.209 4.209 4 C -0.148 4.148 5 C 0.022 3.978 6 C -0.487 4.487 7 H 0.090 0.910 8 C -0.140 4.140 9 N -0.424 5.424 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.186 1.186 13 H -0.202 1.202 14 C 0.080 3.920 15 N -0.358 5.358 16 C 0.118 3.882 17 C -0.152 4.152 18 C -0.113 4.113 19 C -0.176 4.176 20 C -0.181 4.181 21 C -0.175 4.175 22 C -0.196 4.196 23 C -0.015 4.015 24 O -0.310 6.310 25 C -0.011 4.011 26 C -0.202 4.202 27 N -0.237 5.237 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.236 0.764 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.073 0.927 50 H 0.076 0.924 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.341 -10.093 0.674 10.653 hybrid contribution 1.780 1.306 0.226 2.219 sum -1.561 -8.788 0.900 8.970 Atomic orbital electron populations 1.20282 0.91996 1.00680 1.00195 1.19960 0.94168 0.88184 1.08594 1.21192 0.95324 0.96625 1.07742 1.21301 0.92091 0.98161 1.03292 1.17893 0.93794 0.90150 0.95924 1.19077 0.90823 1.03118 1.35668 0.91048 1.25759 1.00490 0.94947 0.92810 1.69808 1.38273 1.11481 1.22881 0.86404 0.82644 0.78435 0.79879 1.19774 1.18600 1.20166 1.18323 0.87823 0.85306 1.00576 1.43904 1.07150 1.00939 1.83786 1.19785 0.90615 0.83898 0.93940 1.21924 0.98634 1.01697 0.92970 1.22439 0.98237 0.97381 0.93256 1.23101 1.00425 0.97897 0.96166 1.22828 0.99254 0.99455 0.96537 1.22890 0.97343 0.99856 0.97455 1.22584 0.99917 0.98698 0.98450 1.22550 0.91393 1.01459 0.86132 1.87833 1.50113 1.44430 1.48618 1.22519 0.92137 0.88658 0.97775 1.22616 0.99207 1.03575 0.94796 1.66352 1.08224 1.28933 1.20172 0.93357 0.92831 0.93080 0.89095 0.86037 0.91074 0.76383 0.88702 0.93280 0.88402 0.90793 0.92059 0.90624 0.92337 0.92006 0.90877 0.90127 0.90705 0.89686 0.93136 0.90085 0.92744 0.92358 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.15 36.00 0.37 -0.91 16 2 C 0.03 0.54 6.79 -82.37 -0.56 -0.02 16 3 C -0.19 -4.24 9.69 -39.50 -0.38 -4.62 16 4 C -0.12 -3.05 8.78 -38.62 -0.34 -3.39 16 5 C 0.03 0.72 5.59 -106.47 -0.60 0.13 16 6 C -0.46 -11.09 8.54 -37.89 -0.32 -11.41 16 7 H 0.07 1.65 6.66 -52.48 -0.35 1.30 16 8 C 0.08 1.83 5.19 -17.32 -0.09 1.74 16 9 N -0.80 -19.93 10.98 55.55 0.61 -19.32 16 10 Si 0.90 18.09 29.59 -169.99 -5.03 13.06 16 11 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 12 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 13 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 14 C 0.32 6.99 6.91 -155.02 -1.07 5.91 16 15 N -0.72 -13.35 3.19 -47.12 -0.15 -13.50 16 16 C 0.21 3.26 0.35 -131.64 -0.05 3.21 16 17 C -0.11 -1.81 3.86 -26.73 -0.10 -1.91 16 18 C -0.09 -1.48 3.22 -89.80 -0.29 -1.77 16 19 C -0.14 -1.80 5.93 -25.83 -0.15 -1.96 16 20 C -0.14 -1.86 8.09 -25.82 -0.21 -2.07 16 21 C -0.14 -2.02 7.65 -25.91 -0.20 -2.22 16 22 C -0.16 -2.16 4.26 -26.50 -0.11 -2.27 16 23 C 0.06 0.86 6.67 37.30 0.25 1.10 16 24 O -0.39 -6.21 10.77 -35.23 -0.38 -6.59 16 25 C 0.07 1.05 6.68 37.21 0.25 1.30 16 26 C -0.16 -2.63 4.79 -26.59 -0.13 -2.76 16 27 N -0.52 -11.09 5.43 -8.11 -0.04 -11.13 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.80 8.07 -51.93 -0.42 0.39 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.12 3.17 6.30 -52.49 -0.33 2.83 16 33 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 34 H 0.40 7.48 5.68 -40.82 -0.23 7.25 16 35 H 0.09 1.77 6.12 -51.92 -0.32 1.45 16 36 H 0.05 0.71 7.88 -51.93 -0.41 0.31 16 37 H 0.10 1.87 7.25 -51.93 -0.38 1.49 16 38 H 0.07 0.89 7.92 -51.93 -0.41 0.48 16 39 H 0.06 0.78 7.18 -51.93 -0.37 0.40 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 44 H 0.08 1.05 5.59 -51.93 -0.29 0.76 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.74 7.07 -51.93 -0.37 0.37 16 48 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 50 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.11 1.93 5.92 -51.93 -0.31 1.63 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -25.39 381.53 -11.35 -36.74 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -8.37 Total: 16.91 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -3.74 Total: -21.91 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.42 Total: -43.95 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.38 Total: -6.59 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -25.39 -11.35 -36.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161923377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.684 kcal (2) G-P(sol) polarization free energy of solvation -25.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds