Wall clock time and date at job start Tue Mar 31 2020 15:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38672 * 119.27789 * 2 1 4 4 C 1.38011 * 119.63131 * 179.97438 * 3 2 1 5 5 C 1.41002 * 118.27587 * 0.02562 * 4 3 2 6 6 C 1.41022 * 120.70143 * 180.02562 * 5 4 3 7 7 H 1.08006 * 119.99694 * 205.67816 * 6 5 4 8 8 C 1.39946 * 120.00088 * 25.67691 * 6 5 4 9 9 N 1.30863 * 120.00293 * 16.17928 * 8 6 5 10 10 Si 1.86801 * 120.00021 * 196.17116 * 8 6 5 11 11 H 1.48494 * 109.47485 * 265.02110 * 10 8 6 12 12 H 1.48498 * 109.47164 * 25.02479 * 10 8 6 13 13 H 1.48507 * 109.46952 * 145.01903 * 10 8 6 14 14 C 1.41702 * 118.59239 * 0.27301 * 5 4 3 15 15 N 1.38090 * 119.90558 * 179.70705 * 14 5 4 16 16 C 1.46510 * 119.99980 * 176.64727 * 15 14 5 17 17 C 1.52998 * 109.53954 * 301.40249 * 16 15 14 18 18 C 1.53003 * 109.47245 * 305.00160 * 17 16 15 19 19 C 1.53780 * 113.61267 * 274.13919 * 18 17 16 20 20 C 1.53958 * 87.02045 * 220.04756 * 19 18 17 21 21 C 1.53785 * 113.61389 * 176.53176 * 18 17 16 22 22 C 1.53171 * 109.54250 * 181.22607 * 16 15 14 23 23 C 1.53278 * 109.06378 * 297.02491 * 22 16 15 24 24 O 1.42895 * 109.46336 * 302.44860 * 23 22 16 25 25 C 1.42903 * 114.09976 * 61.15767 * 24 23 22 26 26 C 1.53099 * 109.41397 * 298.84350 * 25 24 23 27 27 N 1.31972 * 119.27503 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47167 * 89.99883 * 1 2 3 29 29 H 1.09003 * 109.47473 * 209.99671 * 1 2 3 30 30 H 1.08995 * 109.47587 * 329.99999 * 1 2 3 31 31 H 1.07998 * 120.18815 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.86047 * 179.97438 * 4 3 2 33 33 H 0.97004 * 120.00284 * 180.02562 * 9 8 6 34 34 H 0.96991 * 120.00388 * 356.63773 * 15 14 5 35 35 H 1.09008 * 109.47477 * 65.00087 * 17 16 15 36 36 H 1.09003 * 109.47022 * 185.00140 * 17 16 15 37 37 H 1.09000 * 112.84749 * 45.33177 * 18 17 16 38 38 H 1.09004 * 113.61466 * 334.56697 * 19 18 17 39 39 H 1.08998 * 113.61931 * 105.47206 * 19 18 17 40 40 H 1.09002 * 113.53427 * 270.81265 * 20 19 18 41 41 H 1.09001 * 113.74525 * 139.94020 * 20 19 18 42 42 H 1.09002 * 113.61099 * 254.52688 * 21 18 17 43 43 H 1.08993 * 113.61510 * 25.42988 * 21 18 17 44 44 H 1.09000 * 109.52358 * 57.01598 * 22 16 15 45 45 H 1.08999 * 109.52139 * 177.20417 * 22 16 15 46 46 H 1.09004 * 109.46042 * 182.44880 * 23 22 16 47 47 H 1.09006 * 109.46871 * 62.45297 * 23 22 16 48 48 H 1.08997 * 109.48155 * 178.86256 * 25 24 23 49 49 H 1.08997 * 109.48817 * 58.83130 * 25 24 23 50 50 H 1.09002 * 109.52198 * 297.70201 * 26 25 24 51 51 H 1.08994 * 109.57105 * 177.54325 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2181 0.0005 5 6 4.2408 -0.0195 0.0005 6 6 5.6501 -0.0705 0.0016 7 1 6.1596 -0.9323 -0.4037 8 6 6.3885 0.9955 0.5278 9 7 5.8042 1.8812 1.2937 10 14 8.2083 1.1540 0.1371 11 1 9.0042 0.5294 1.2239 12 1 8.5004 0.4683 -1.1473 13 1 8.5669 2.5907 0.0238 14 6 3.4737 -1.2109 -0.0060 15 7 4.1074 -2.4378 -0.0123 16 6 3.3181 -3.6703 0.0552 17 6 2.4743 -3.6684 1.3315 18 6 3.3840 -3.4603 2.5440 19 6 3.9986 -4.7626 3.0836 20 6 3.7486 -4.2012 4.4952 21 6 2.6216 -3.3579 3.8757 22 6 4.2573 -4.8803 0.0636 23 6 5.0403 -4.9155 -1.2536 24 8 4.1255 -4.9652 -2.3501 25 6 3.2537 -3.8360 -2.4344 26 6 2.3987 -3.7575 -1.1668 27 7 2.1523 -1.1512 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6364 2.1398 0.0004 32 1 4.1135 2.1486 0.0001 33 1 6.3159 2.6204 1.6581 34 1 5.0749 -2.4837 -0.0615 35 1 1.7435 -2.8610 1.2827 36 1 1.9558 -4.6226 1.4257 37 1 4.1119 -2.6628 2.3951 38 1 3.4091 -5.6507 2.8561 39 1 5.0546 -4.8806 2.8404 40 1 4.5773 -3.6070 4.8804 41 1 3.3950 -4.9465 5.2076 42 1 2.5676 -2.3436 4.2709 43 1 1.6549 -3.8613 3.8652 44 1 4.9511 -4.7971 0.9002 45 1 3.6724 -5.7946 0.1639 46 1 5.6791 -5.7985 -1.2728 47 1 5.6561 -4.0196 -1.3342 48 1 2.6053 -3.9415 -3.3042 49 1 3.8457 -2.9259 -2.5304 50 1 1.7763 -4.6492 -1.0914 51 1 1.7637 -2.8726 -1.2089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161923377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:57 Heat of formation + Delta-G solvation = -12.884375 kcal Electronic energy + Delta-G solvation = -30820.107022 eV Core-core repulsion = 27104.809637 eV Total energy + Delta-G solvation = -3715.297385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47336 -39.88664 -39.31815 -36.71021 -35.94593 -33.65314 -32.44673 -31.89941 -30.56667 -29.99636 -29.20159 -26.52023 -25.82036 -25.39382 -24.35477 -23.00960 -22.64693 -22.32818 -20.21244 -19.93907 -19.07640 -17.89457 -17.18795 -16.97813 -16.86938 -16.58916 -16.19223 -15.78869 -15.62676 -15.47016 -15.34996 -14.90952 -14.36808 -14.25467 -14.05052 -13.84901 -13.57160 -13.37286 -13.26664 -13.15957 -13.06660 -12.98426 -12.91801 -12.77256 -12.54260 -12.39987 -12.18547 -12.10770 -12.05108 -11.67787 -11.60124 -11.36093 -11.23643 -11.05783 -10.96167 -10.80754 -10.64303 -10.09328 -9.75634 -9.54986 -8.59169 -8.18979 -6.06403 0.96936 1.30502 1.38095 1.47430 1.52701 2.21290 2.79262 2.88477 3.02176 3.74103 3.79988 3.85955 3.88602 3.95107 4.03146 4.12573 4.16534 4.20064 4.30245 4.38956 4.54443 4.57072 4.72423 4.74686 4.77875 4.82275 4.84328 4.88372 4.90906 4.97714 5.00803 5.02412 5.04927 5.08191 5.09558 5.15951 5.19441 5.19542 5.27221 5.29606 5.36362 5.43672 5.46103 5.54174 5.73258 5.76905 5.89710 5.97886 6.19442 6.31569 6.48817 6.84992 6.91562 6.99196 7.27408 8.03797 8.42304 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008439 B = 0.005436 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.323586 B = 5150.053338 C = 5361.459036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.026 3.974 3 C -0.207 4.207 4 C -0.146 4.146 5 C -0.008 4.008 6 C -0.477 4.477 7 H 0.075 0.925 8 C 0.035 3.965 9 N -0.835 5.835 10 Si 0.970 3.030 11 H -0.266 1.266 12 H -0.259 1.259 13 H -0.275 1.275 14 C 0.325 3.675 15 N -0.709 5.709 16 C 0.200 3.800 17 C -0.106 4.106 18 C -0.101 4.101 19 C -0.123 4.123 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.149 4.149 23 C 0.057 3.943 24 O -0.396 6.396 25 C 0.071 3.929 26 C -0.158 4.158 27 N -0.516 5.516 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.281 0.719 34 H 0.397 0.603 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.037 0.963 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.037 0.963 48 H 0.095 0.905 49 H 0.027 0.973 50 H 0.076 0.924 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 -12.337 0.762 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C -0.229 4.229 4 C -0.172 4.172 5 C -0.015 4.015 6 C -0.509 4.509 7 H 0.093 0.907 8 C -0.178 4.178 9 N -0.463 5.463 10 Si 0.793 3.207 11 H -0.191 1.191 12 H -0.183 1.183 13 H -0.200 1.200 14 C 0.086 3.914 15 N -0.346 5.346 16 C 0.114 3.886 17 C -0.145 4.145 18 C -0.120 4.120 19 C -0.160 4.160 20 C -0.174 4.174 21 C -0.179 4.179 22 C -0.187 4.187 23 C -0.020 4.020 24 O -0.315 6.315 25 C -0.006 4.006 26 C -0.197 4.197 27 N -0.235 5.235 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.233 0.767 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.132 0.868 47 H 0.055 0.945 48 H 0.113 0.887 49 H 0.046 0.954 50 H 0.094 0.906 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.676 -13.135 0.788 13.663 hybrid contribution 1.754 2.198 0.187 2.818 sum -1.923 -10.937 0.975 11.148 Atomic orbital electron populations 1.20314 0.88660 1.01896 1.01669 1.20738 0.96487 0.87708 1.05934 1.21393 0.94704 0.98057 1.08772 1.21273 0.93208 0.97705 1.05030 1.18226 0.94601 0.91121 0.97512 1.19276 0.91132 1.03938 1.36545 0.90660 1.26535 1.04591 0.94414 0.92267 1.69894 1.39953 1.12281 1.24138 0.85361 0.77431 0.78296 0.79660 1.19090 1.18287 1.19961 1.18509 0.88112 0.85980 0.98796 1.43988 1.07217 1.00929 1.82513 1.20026 0.91032 0.83542 0.94031 1.21826 0.98017 1.01679 0.92930 1.22314 0.97877 0.98038 0.93752 1.23043 1.00859 0.96866 0.95271 1.22787 0.98081 0.99359 0.97179 1.22936 0.98696 0.99170 0.97091 1.22535 0.99641 0.97908 0.98584 1.22727 0.91265 1.02265 0.85699 1.87832 1.50279 1.43900 1.49494 1.22427 0.91989 0.87817 0.98357 1.22530 0.99029 1.03255 0.94847 1.66600 1.07649 1.28719 1.20491 0.91603 0.92012 0.91444 0.87584 0.88195 0.90830 0.76662 0.91646 0.90949 0.92534 0.88635 0.91533 0.91510 0.90034 0.94429 0.89401 0.89369 0.88698 0.86817 0.94469 0.88710 0.95437 0.90553 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.24 10.15 71.23 0.72 -1.52 16 2 C 0.03 1.10 6.79 42.64 0.29 1.39 16 3 C -0.21 -9.71 9.69 22.32 0.22 -9.49 16 4 C -0.15 -7.69 8.78 22.89 0.20 -7.49 16 5 C -0.01 -0.40 5.59 -21.06 -0.12 -0.51 16 6 C -0.48 -24.33 8.54 23.37 0.20 -24.13 16 7 H 0.08 3.62 6.66 -2.91 -0.02 3.60 16 8 C 0.04 1.74 5.19 85.25 0.44 2.18 16 9 N -0.83 -43.87 10.98 21.83 0.24 -43.63 16 10 Si 0.97 38.15 29.59 68.60 2.03 40.18 16 11 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 12 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 13 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 14 C 0.32 14.78 6.91 134.05 0.93 15.71 16 15 N -0.71 -26.74 3.19 -303.00 -0.97 -27.71 16 16 C 0.20 6.10 0.35 3.72 0.00 6.10 16 17 C -0.11 -3.22 3.86 30.59 0.12 -3.10 16 18 C -0.10 -3.08 3.22 -10.27 -0.03 -3.12 16 19 C -0.12 -2.85 5.93 31.18 0.18 -2.66 16 20 C -0.14 -3.26 8.09 31.18 0.25 -3.00 16 21 C -0.14 -4.02 7.65 31.12 0.24 -3.78 16 22 C -0.15 -3.62 4.26 30.74 0.13 -3.49 16 23 C 0.06 1.45 6.67 72.08 0.48 1.93 16 24 O -0.40 -11.69 10.77 -148.98 -1.60 -13.30 16 25 C 0.07 2.18 6.68 72.02 0.48 2.67 16 26 C -0.16 -4.86 4.79 30.69 0.15 -4.71 16 27 N -0.52 -22.39 5.43 -179.58 -0.97 -23.36 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 31 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.10 5.60 6.30 -2.91 -0.02 5.58 16 33 H 0.28 13.62 8.30 -92.71 -0.77 12.85 16 34 H 0.40 15.23 5.68 -92.72 -0.53 14.70 16 35 H 0.06 2.40 6.12 -2.38 -0.01 2.39 16 36 H 0.07 1.86 7.88 -2.39 -0.02 1.85 16 37 H 0.06 2.21 7.25 -2.39 -0.02 2.19 16 38 H 0.10 1.85 7.92 -2.39 -0.02 1.83 16 39 H 0.07 1.49 7.18 -2.39 -0.02 1.47 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16 44 H 0.09 2.05 5.59 -2.39 -0.01 2.04 16 45 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 47 H 0.04 1.05 7.07 -2.38 -0.02 1.03 16 48 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 49 H 0.03 0.99 7.75 -2.39 -0.02 0.97 16 50 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.08 2.97 5.92 -2.39 -0.01 2.95 16 Total: -1.00 -58.02 381.53 4.01 -54.02 By element: Atomic # 1 Polarization: 50.42 SS G_CDS: 0.40 Total: 50.82 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 4.88 Total: -37.03 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -1.70 Total: -94.70 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -1.60 Total: -13.30 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -58.02 4.01 -54.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161923377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.132 kcal (2) G-P(sol) polarization free energy of solvation -58.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds