Wall clock time and date at job start Tue Mar 31 2020 16:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 115.55980 * 2 1 4 4 C 1.52996 * 117.50138 * 214.31209 * 2 1 3 5 5 C 1.53002 * 117.49919 * 145.68385 * 2 1 3 6 6 H 1.08998 * 117.51677 * 0.02562 * 5 2 1 7 7 C 1.50700 * 117.50072 * 214.97997 * 5 2 1 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 5 2 9 9 N 1.34777 * 119.99675 * 180.26760 * 7 5 2 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 5 11 11 C 1.53009 * 109.47238 * 90.00006 * 10 9 7 12 12 N 1.46497 * 109.47238 * 179.97438 * 11 10 9 13 13 C 1.36934 * 120.00370 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99711 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00367 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99961 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99931 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46765 * 90.00533 * 17 15 13 19 19 H 1.48499 * 109.47454 * 209.99884 * 17 15 13 20 20 H 1.48497 * 109.47365 * 330.00613 * 17 15 13 21 21 C 1.46496 * 120.00345 * 359.72090 * 9 7 5 22 22 C 1.53005 * 109.46942 * 90.00092 * 21 9 7 23 23 C 1.50696 * 109.47065 * 179.97438 * 22 21 9 24 24 C 1.38236 * 120.00391 * 269.73055 * 23 22 21 25 25 C 1.38238 * 119.99934 * 179.76615 * 24 23 22 26 26 C 1.38227 * 119.99952 * 0.50732 * 25 24 23 27 27 C 1.38233 * 120.00256 * 359.74636 * 26 25 24 28 28 C 1.38235 * 120.00083 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.47207 * 274.31107 * 1 2 3 30 30 H 1.09004 * 109.46750 * 34.31054 * 1 2 3 31 31 H 1.09001 * 109.46913 * 154.31060 * 1 2 3 32 32 H 1.08999 * 109.46961 * 205.68578 * 3 2 1 33 33 H 1.08995 * 109.47305 * 325.68623 * 3 2 1 34 34 H 1.09005 * 109.46998 * 85.68730 * 3 2 1 35 35 H 1.08992 * 117.50251 * 145.02429 * 4 2 1 36 36 H 1.08999 * 117.49564 * 359.97438 * 4 2 1 37 37 H 1.09000 * 109.46889 * 209.99487 * 10 9 7 38 38 H 1.09001 * 109.47460 * 330.00097 * 10 9 7 39 39 H 1.09000 * 109.46757 * 299.99562 * 11 10 9 40 40 H 1.08993 * 109.47081 * 59.99692 * 11 10 9 41 41 H 0.97001 * 120.00037 * 359.97438 * 12 11 10 42 42 H 0.97004 * 119.99711 * 179.97438 * 16 15 13 43 43 H 1.08995 * 109.47364 * 210.00706 * 21 9 7 44 44 H 1.09002 * 109.47090 * 330.00257 * 21 9 7 45 45 H 1.08998 * 109.46999 * 300.00039 * 22 21 9 46 46 H 1.08997 * 109.46656 * 60.00331 * 22 21 9 47 47 H 1.08004 * 119.99517 * 359.97438 * 24 23 22 48 48 H 1.08004 * 119.99526 * 180.22725 * 25 24 23 49 49 H 1.08001 * 120.00137 * 179.72643 * 26 25 24 50 50 H 1.08004 * 119.99949 * 179.97438 * 27 26 25 51 51 H 1.07995 * 120.00144 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7651 6 1 1.6115 -1.8588 1.2682 7 6 3.5293 -0.7810 1.4609 8 8 3.9720 0.3465 1.4008 9 7 4.1965 -1.7315 2.1450 10 6 5.4563 -1.4025 2.8164 11 6 5.1667 -0.9388 4.2455 12 7 6.4266 -0.6104 4.9171 13 6 6.4169 -0.1701 6.2137 14 1 5.4803 -0.0646 6.7411 15 6 7.6107 0.1405 6.8502 16 7 8.7520 0.0125 6.2072 17 14 7.5973 0.7417 8.6187 18 1 7.6978 -0.4207 9.5374 19 1 8.7508 1.6499 8.8417 20 1 6.3326 1.4737 8.8832 21 6 3.6618 -3.0935 2.2173 22 6 4.2038 -3.9169 1.0472 23 6 3.6543 -5.3181 1.1219 24 6 4.3419 -6.2940 1.8189 25 6 3.8354 -7.5782 1.8914 26 6 2.6466 -7.8890 1.2582 27 6 1.9617 -6.9145 0.5568 28 6 2.4652 -5.6289 0.4891 29 1 -0.3634 0.0773 1.0248 30 1 -0.3633 0.8489 -0.5793 31 1 -0.3633 -0.9261 -0.4455 32 1 3.1824 1.3085 -0.4454 33 1 1.5812 2.0743 -0.5793 34 1 2.2772 1.7414 1.0248 35 1 3.1716 -0.8751 -1.2682 36 1 1.6113 -1.8586 -1.2679 37 1 6.0949 -2.2854 2.8434 38 1 5.9613 -0.6052 2.2710 39 1 4.5281 -0.0559 4.2185 40 1 4.6618 -1.7360 4.7909 41 1 7.2678 -0.7054 4.4435 42 1 9.5862 0.2299 6.6520 43 1 3.9660 -3.5538 3.1573 44 1 2.5736 -3.0599 2.1647 45 1 3.8995 -3.4565 0.1072 46 1 5.2920 -3.9505 1.0999 47 1 5.2732 -6.0523 2.3095 48 1 4.3708 -8.3397 2.4391 49 1 2.2531 -8.8934 1.3112 50 1 1.0330 -7.1575 0.0618 51 1 1.9303 -4.8676 -0.0592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162773908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:08 Heat of formation + Delta-G solvation = 2.270665 kcal Electronic energy + Delta-G solvation = -28230.489960 eV Core-core repulsion = 24515.849747 eV Total energy + Delta-G solvation = -3714.640214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.51839 -40.08105 -38.66363 -37.25047 -36.46472 -34.15779 -33.13535 -31.68960 -30.76781 -29.89358 -28.75158 -28.30960 -26.21054 -25.03213 -24.38067 -23.38297 -22.90270 -21.88192 -20.60908 -19.51366 -19.16806 -18.34520 -17.65225 -17.15487 -16.61164 -16.22432 -16.04454 -15.97793 -15.62461 -15.34099 -15.14832 -14.91415 -14.75459 -14.49024 -14.36968 -14.23819 -14.05096 -13.99449 -13.62504 -13.41076 -13.17569 -13.06224 -12.89848 -12.88874 -12.74858 -12.60015 -12.39554 -12.18428 -12.14854 -12.06918 -11.90606 -11.83580 -11.68143 -11.12228 -11.00606 -10.76811 -10.42034 -9.92083 -9.73926 -9.40926 -9.09823 -8.00405 -5.31494 0.49883 0.58236 1.43837 1.46873 1.51542 1.55569 1.89749 2.53300 2.81313 2.95339 3.32531 3.43354 3.67674 3.83494 3.89187 3.97100 4.05638 4.06164 4.15714 4.18056 4.22166 4.24724 4.25690 4.37843 4.39554 4.50156 4.55628 4.63088 4.71793 4.73474 4.83884 4.87215 4.89850 4.97509 5.01795 5.05947 5.06706 5.11088 5.13470 5.15234 5.25336 5.27441 5.35138 5.40309 5.52175 5.56624 5.65829 5.71217 5.79873 6.20435 6.20934 6.42017 7.21714 7.27073 7.98102 8.24167 9.22931 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007854 B = 0.003378 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3564.097849 B = 8287.455370 C =11237.372876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.100 4.100 4 C -0.124 4.124 5 C -0.191 4.191 6 H 0.147 0.853 7 C 0.531 3.469 8 O -0.574 6.574 9 N -0.601 5.601 10 C 0.125 3.875 11 C 0.151 3.849 12 N -0.742 5.742 13 C -0.253 4.253 14 H 0.072 0.928 15 C -0.072 4.072 16 N -0.967 5.967 17 Si 0.978 3.022 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.272 1.272 21 C 0.116 3.884 22 C -0.088 4.088 23 C -0.087 4.087 24 C -0.133 4.133 25 C -0.131 4.131 26 C -0.133 4.133 27 C -0.125 4.125 28 C -0.119 4.119 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.060 0.940 39 H -0.002 1.002 40 H 0.026 0.974 41 H 0.376 0.624 42 H 0.254 0.746 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.118 0.882 48 H 0.130 0.870 49 H 0.137 0.863 50 H 0.143 0.857 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.108 -15.076 -18.152 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.158 4.158 4 C -0.162 4.162 5 C -0.211 4.211 6 H 0.165 0.835 7 C 0.321 3.679 8 O -0.454 6.454 9 N -0.332 5.332 10 C 0.001 3.999 11 C 0.024 3.976 12 N -0.386 5.386 13 C -0.384 4.384 14 H 0.090 0.910 15 C -0.264 4.264 16 N -0.617 5.617 17 Si 0.806 3.194 18 H -0.207 1.207 19 H -0.218 1.218 20 H -0.197 1.197 21 C -0.006 4.006 22 C -0.126 4.126 23 C -0.087 4.087 24 C -0.152 4.152 25 C -0.149 4.149 26 C -0.151 4.151 27 C -0.142 4.142 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.157 0.843 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.016 0.984 40 H 0.044 0.956 41 H 0.208 0.792 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.136 0.864 48 H 0.148 0.852 49 H 0.155 0.845 50 H 0.161 0.839 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.956 -14.431 -18.018 30.514 hybrid contribution 1.216 0.489 1.259 1.817 sum -18.740 -13.941 -16.759 28.747 Atomic orbital electron populations 1.21393 0.89329 1.03631 1.02386 1.21693 0.96123 0.90692 1.02015 1.21256 0.99059 0.94657 1.00786 1.23302 1.02565 1.01008 0.89278 1.22419 0.96040 1.05953 0.96718 0.83540 1.20491 0.85672 0.83821 0.77911 1.90722 1.69602 1.22402 1.62655 1.47926 1.23119 1.11014 1.51153 1.21278 0.85937 1.01077 0.91611 1.20920 0.88392 0.96107 0.92221 1.42383 1.03847 1.80156 1.12177 1.19577 0.93067 1.36016 0.89758 0.91044 1.25626 0.94905 1.02988 1.02914 1.69821 0.97348 1.56258 1.38296 0.85083 0.77048 0.77769 0.79494 1.20706 1.21819 1.19715 1.21775 1.00050 0.79607 0.99123 1.20905 1.00758 0.91539 0.99392 1.19794 0.95865 0.94720 0.98339 1.21286 1.00435 0.93786 0.99653 1.21387 0.96930 0.96661 0.99940 1.21460 0.95353 1.00492 0.97770 1.21468 1.00588 0.93115 0.99070 1.21324 0.95316 0.97485 0.99527 0.92370 0.91124 0.89953 0.93948 0.91647 0.94460 0.89666 0.84295 0.89161 0.92160 0.98352 0.95584 0.79248 0.93734 0.90524 0.88011 0.89557 0.91601 0.86387 0.85203 0.84506 0.83937 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.85 71.98 0.71 -0.70 16 2 C -0.10 -1.98 2.70 -52.18 -0.14 -2.12 16 3 C -0.10 -2.55 8.09 71.98 0.58 -1.97 16 4 C -0.12 -1.88 9.53 30.60 0.29 -1.59 16 5 C -0.19 -3.76 5.01 -11.54 -0.06 -3.82 16 6 H 0.15 2.12 6.44 -2.39 -0.02 2.11 16 7 C 0.53 15.99 7.44 87.66 0.65 16.64 16 8 O -0.57 -22.75 12.68 -3.04 -0.04 -22.79 16 9 N -0.60 -17.06 2.47 -821.80 -2.03 -19.10 16 10 C 0.12 4.50 5.52 86.38 0.48 4.98 16 11 C 0.15 6.76 6.58 86.38 0.57 7.32 16 12 N -0.74 -40.62 5.60 -343.45 -1.92 -42.54 16 13 C -0.25 -14.97 9.99 84.03 0.84 -14.13 16 14 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 15 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 16 N -0.97 -60.88 13.06 21.65 0.28 -60.59 16 17 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 C 0.12 2.36 5.21 86.38 0.45 2.81 16 22 C -0.09 -1.52 5.67 29.85 0.17 -1.35 16 23 C -0.09 -1.43 5.13 -19.87 -0.10 -1.54 16 24 C -0.13 -2.43 9.70 22.27 0.22 -2.22 16 25 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 26 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 27 C -0.12 -1.55 10.05 22.27 0.22 -1.32 16 28 C -0.12 -1.57 9.70 22.27 0.22 -1.36 16 29 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.83 7.92 -2.39 -0.02 0.81 16 31 H 0.08 0.66 7.90 -2.39 -0.02 0.65 16 32 H 0.04 1.23 7.01 -2.39 -0.02 1.22 16 33 H 0.06 1.34 7.92 -2.39 -0.02 1.33 16 34 H 0.04 1.16 7.26 -2.38 -0.02 1.15 16 35 H 0.08 1.56 8.05 -2.39 -0.02 1.54 16 36 H 0.14 1.10 8.05 -2.39 -0.02 1.08 16 37 H 0.09 2.97 8.07 -2.39 -0.02 2.95 16 38 H 0.06 2.48 7.42 -2.39 -0.02 2.46 16 39 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.38 21.44 7.67 -92.71 -0.71 20.73 16 42 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.08 1.68 8.07 -2.39 -0.02 1.66 16 44 H 0.10 1.61 6.00 -2.39 -0.01 1.59 16 45 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 46 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 47 H 0.12 2.17 8.06 -2.91 -0.02 2.14 16 48 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 49 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 50 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 51 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -75.79 415.28 4.51 -71.28 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.19 Total: 31.81 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 6.01 Total: -7.66 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -3.67 Total: -122.23 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.04 Total: -22.79 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -75.79 4.51 -71.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162773908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.552 kcal (2) G-P(sol) polarization free energy of solvation -75.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds