Wall clock time and date at job start Tue Mar 31 2020 16:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 115.56386 * 2 1 4 4 C 1.53005 * 117.49884 * 214.31179 * 2 1 3 5 5 C 1.52998 * 60.00129 * 252.51070 * 4 2 1 6 6 H 1.08998 * 117.52019 * 252.52096 * 5 4 2 7 7 C 1.50696 * 117.49742 * 107.48801 * 5 4 2 8 8 O 1.21279 * 120.00561 * 291.37749 * 7 5 4 9 9 N 1.34781 * 120.00106 * 111.38385 * 7 5 4 10 10 C 1.46496 * 120.00375 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47378 * 269.99702 * 10 9 7 12 12 N 1.46496 * 109.47378 * 179.97438 * 11 10 9 13 13 C 1.36935 * 120.00077 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00010 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00181 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00051 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99999 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47003 * 60.00459 * 17 15 13 19 19 H 1.48498 * 109.47266 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47569 * 300.00298 * 17 15 13 21 21 C 1.46498 * 119.99658 * 359.97438 * 9 7 5 22 22 C 1.52995 * 109.47258 * 90.00546 * 21 9 7 23 23 C 1.50700 * 109.47635 * 179.97438 * 22 21 9 24 24 C 1.38235 * 120.00273 * 89.99495 * 23 22 21 25 25 C 1.38234 * 120.00220 * 179.97438 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38238 * 119.99747 * 359.50225 * 26 25 24 28 28 C 1.38234 * 120.00083 * 0.44989 * 27 26 25 29 29 H 1.09003 * 109.46815 * 274.30631 * 1 2 3 30 30 H 1.08993 * 109.47024 * 34.31239 * 1 2 3 31 31 H 1.09002 * 109.47134 * 154.30940 * 1 2 3 32 32 H 1.08999 * 109.47257 * 205.68905 * 3 2 1 33 33 H 1.08998 * 109.46988 * 325.68838 * 3 2 1 34 34 H 1.08998 * 109.46565 * 85.69244 * 3 2 1 35 35 H 1.08999 * 117.50042 * 145.01704 * 4 2 1 36 36 H 1.09003 * 117.50009 * 0.02562 * 4 2 1 37 37 H 1.09001 * 109.47067 * 29.99776 * 10 9 7 38 38 H 1.09003 * 109.47380 * 149.99155 * 10 9 7 39 39 H 1.09001 * 109.47082 * 300.00064 * 11 10 9 40 40 H 1.08999 * 109.46872 * 59.99572 * 11 10 9 41 41 H 0.96999 * 120.00089 * 359.97438 * 12 11 10 42 42 H 0.97000 * 120.00525 * 180.02562 * 16 15 13 43 43 H 1.09003 * 109.47365 * 330.00607 * 21 9 7 44 44 H 1.08999 * 109.47464 * 210.00432 * 21 9 7 45 45 H 1.08999 * 109.47580 * 59.99602 * 22 21 9 46 46 H 1.09009 * 109.47230 * 299.99989 * 22 21 9 47 47 H 1.07999 * 119.99770 * 359.97438 * 24 23 22 48 48 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 49 49 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 50 50 H 1.07999 * 119.99927 * 180.28388 * 27 26 25 51 51 H 1.08002 * 120.00281 * 179.83134 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1211 0.7649 6 1 3.1713 -0.8751 1.2686 7 6 1.3720 -2.1407 1.4607 8 8 0.1639 -2.0534 1.4011 9 7 1.9415 -3.1497 2.1493 10 6 1.1012 -4.1406 2.8262 11 6 0.8092 -3.6723 4.2531 12 7 -0.0316 -4.6629 4.9298 13 6 -0.4244 -4.4571 6.2253 14 1 -0.1140 -3.5647 6.7485 15 6 -1.2216 -5.3955 6.8664 16 7 -1.5994 -6.4833 6.2291 17 14 -1.7568 -5.1150 8.6339 18 1 -2.5430 -3.8581 8.7195 19 1 -2.5959 -6.2546 9.0838 20 1 -0.5577 -5.0090 9.5034 21 6 3.4009 -3.2554 2.2209 22 6 3.9095 -2.4791 3.4372 23 6 5.4107 -2.5883 3.5113 24 6 6.2041 -1.6537 2.8728 25 6 7.5812 -1.7536 2.9412 26 6 8.1648 -2.7916 3.6432 27 6 7.3714 -3.7238 4.2855 28 6 5.9943 -3.6233 4.2179 29 1 -0.3633 0.0772 1.0248 30 1 -0.3633 0.8488 -0.5793 31 1 -0.3633 -0.9261 -0.4455 32 1 3.1824 1.3084 -0.4455 33 1 1.5813 2.0742 -0.5793 34 1 2.2773 1.7412 1.0248 35 1 3.1715 -0.8752 -1.2684 36 1 1.6112 -1.8583 -1.2687 37 1 0.1636 -4.2543 2.2820 38 1 1.6216 -5.0979 2.8572 39 1 1.7468 -3.5586 4.7973 40 1 0.2889 -2.7150 4.2220 41 1 -0.3107 -5.4642 4.4599 42 1 -2.1568 -7.1389 6.6768 43 1 3.8404 -2.8391 1.3145 44 1 3.6852 -4.3036 2.3142 45 1 3.4701 -2.8953 4.3438 46 1 3.6253 -1.4308 3.3440 47 1 5.7482 -0.8454 2.3204 48 1 8.2010 -1.0231 2.4426 49 1 9.2406 -2.8722 3.6931 50 1 7.8273 -4.5321 4.8378 51 1 5.3744 -4.3531 4.7173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162773909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:12 Heat of formation + Delta-G solvation = 19.757670 kcal Electronic energy + Delta-G solvation = -28427.864261 eV Core-core repulsion = 24713.982341 eV Total energy + Delta-G solvation = -3713.881920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45375 -39.38671 -37.67406 -36.03006 -34.61087 -32.96868 -31.35988 -31.03759 -29.68583 -28.78191 -27.56212 -27.45876 -24.71947 -23.93176 -22.82664 -22.71839 -21.45486 -20.93110 -19.79106 -18.50947 -17.35103 -17.10237 -16.84225 -15.79131 -15.49926 -15.24856 -14.96098 -14.73419 -14.39009 -14.13506 -13.74266 -13.70524 -13.50174 -13.41471 -13.23333 -13.19195 -13.12603 -13.04454 -12.64861 -12.49639 -12.29002 -12.02652 -11.83130 -11.45097 -11.30910 -11.23791 -11.18775 -11.02995 -10.90911 -10.82601 -10.56857 -10.27612 -10.12117 -9.89166 -9.72320 -9.31534 -9.07640 -8.97341 -8.83446 -8.40859 -6.90148 -5.73571 -3.02566 1.18397 1.24647 2.59747 3.05557 3.46600 3.50722 3.52056 3.61141 3.68386 4.34981 4.51942 4.62548 4.63081 4.67969 4.72797 4.84607 4.89566 4.94664 4.97484 5.07052 5.16178 5.32054 5.35143 5.40952 5.41625 5.49795 5.52323 5.55341 5.64245 5.68068 5.78363 5.79823 5.82142 5.86093 5.91644 5.91777 5.98657 6.03570 6.08100 6.14470 6.20792 6.30342 6.36313 6.48263 6.53291 6.65062 6.80476 6.86213 6.95457 7.55985 7.72169 8.37798 8.45274 9.55837 10.12408 10.47399 11.49320 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007298 B = 0.003779 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3835.947873 B = 7407.765842 C =10484.985149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.094 4.094 3 C -0.116 4.116 4 C -0.149 4.149 5 C -0.186 4.186 6 H 0.120 0.880 7 C 0.541 3.459 8 O -0.525 6.525 9 N -0.605 5.605 10 C 0.108 3.892 11 C 0.143 3.857 12 N -0.730 5.730 13 C -0.238 4.238 14 H 0.069 0.931 15 C -0.013 4.013 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.120 3.880 22 C -0.108 4.108 23 C -0.075 4.075 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.113 4.113 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.330 11.716 -14.242 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.095 4.095 3 C -0.173 4.173 4 C -0.186 4.186 5 C -0.207 4.207 6 H 0.138 0.862 7 C 0.329 3.671 8 O -0.401 6.401 9 N -0.337 5.337 10 C -0.015 4.015 11 C 0.015 3.985 12 N -0.375 5.375 13 C -0.369 4.369 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.582 5.582 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.213 1.213 21 C -0.004 4.004 22 C -0.146 4.146 23 C -0.075 4.075 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.136 4.136 28 C -0.131 4.131 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.139 0.861 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 18.627 11.805 -14.115 26.183 hybrid contribution -0.108 -0.261 1.098 1.134 sum 18.518 11.545 -13.017 25.410 Atomic orbital electron populations 1.21361 0.90571 1.01298 1.02847 1.21579 0.96083 0.90424 1.01407 1.21391 0.99775 0.93927 1.02194 1.23197 1.02709 1.01754 0.90968 1.22426 1.01917 1.00858 0.95545 0.86172 1.19650 0.87987 0.81043 0.78433 1.90732 1.14449 1.73748 1.61200 1.47881 1.06450 1.27784 1.51585 1.21724 0.95452 0.90107 0.94180 1.20976 0.94103 0.93547 0.89914 1.42209 1.59912 1.22774 1.12584 1.19153 1.25199 1.03826 0.88728 0.91320 1.24730 1.00721 0.96980 0.98453 1.69647 1.40944 1.10906 1.36749 0.86259 0.78229 0.76965 0.84695 1.21242 1.21640 1.21271 1.21550 0.79709 1.01413 0.97720 1.21226 0.90873 1.01851 1.00642 1.19831 0.95252 0.95161 0.97303 1.21047 0.93638 0.99022 0.99902 1.21113 0.94873 0.98335 0.99573 1.21137 0.99703 0.95355 0.98367 1.21178 0.93846 0.99108 0.99441 1.21195 0.94975 0.98027 0.98889 0.91191 0.93464 0.91651 0.92430 0.91702 0.91975 0.88075 0.88333 0.89738 0.90603 0.96305 0.96043 0.78300 0.93452 0.90265 0.90029 0.89309 0.90731 0.86264 0.86301 0.86369 0.86097 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 8.09 37.16 0.30 -0.99 16 2 C -0.09 -0.99 2.70 -154.50 -0.42 -1.40 16 3 C -0.12 -0.93 9.85 37.16 0.37 -0.56 16 4 C -0.15 -1.39 9.52 -26.73 -0.25 -1.65 16 5 C -0.19 -2.05 4.52 -91.77 -0.41 -2.47 16 6 H 0.12 1.11 6.48 -51.93 -0.34 0.77 16 7 C 0.54 8.10 7.44 -10.99 -0.08 8.02 16 8 O -0.53 -9.85 12.68 5.56 0.07 -9.78 16 9 N -0.60 -8.57 2.47 -173.69 -0.43 -9.00 16 10 C 0.11 1.87 5.56 -4.04 -0.02 1.85 16 11 C 0.14 3.03 6.58 -4.04 -0.03 3.01 16 12 N -0.73 -19.18 5.60 -59.91 -0.34 -19.51 16 13 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 14 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -28.75 13.06 55.49 0.72 -28.03 16 17 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 C 0.12 1.29 5.07 -4.05 -0.02 1.27 16 22 C -0.11 -1.17 5.56 -27.89 -0.15 -1.33 16 23 C -0.07 -0.76 5.13 -104.62 -0.54 -1.30 16 24 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 25 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 26 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 27 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 28 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 29 H 0.07 1.03 7.26 -51.93 -0.38 0.65 16 30 H 0.05 0.49 7.92 -51.93 -0.41 0.08 16 31 H 0.06 0.91 7.02 -51.93 -0.36 0.54 16 32 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 33 H 0.06 0.48 7.92 -51.93 -0.41 0.06 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.71 8.05 -51.93 -0.42 0.30 16 36 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 37 H 0.08 1.63 7.42 -51.93 -0.39 1.25 16 38 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 39 H 0.02 0.39 6.26 -51.93 -0.33 0.07 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.08 0.72 6.64 -51.93 -0.34 0.37 16 44 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 45 H 0.09 1.16 6.21 -51.93 -0.32 0.84 16 46 H 0.07 0.80 7.40 -51.92 -0.38 0.41 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 51 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 410.44 15.07 6.19 6.19 Total: -1.00 -33.44 410.44 -10.83 -44.26 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -8.55 Total: 8.47 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -3.47 Total: -10.46 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.04 Total: -56.54 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.44 -10.83 -44.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162773909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.019 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds