Wall clock time and date at job start Tue Mar 31 2020 16:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 115.56386 * 2 1 4 4 C 1.53005 * 117.49884 * 214.31179 * 2 1 3 5 5 C 1.52998 * 60.00129 * 252.51070 * 4 2 1 6 6 H 1.08998 * 117.52019 * 252.52096 * 5 4 2 7 7 C 1.50696 * 117.49742 * 107.48801 * 5 4 2 8 8 O 1.21279 * 120.00561 * 291.37749 * 7 5 4 9 9 N 1.34781 * 120.00106 * 111.38385 * 7 5 4 10 10 C 1.46496 * 120.00375 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47378 * 269.99702 * 10 9 7 12 12 N 1.46496 * 109.47378 * 179.97438 * 11 10 9 13 13 C 1.36935 * 120.00077 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00010 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00181 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00051 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99999 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47003 * 60.00459 * 17 15 13 19 19 H 1.48498 * 109.47266 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47569 * 300.00298 * 17 15 13 21 21 C 1.46498 * 119.99658 * 359.97438 * 9 7 5 22 22 C 1.52995 * 109.47258 * 90.00546 * 21 9 7 23 23 C 1.50700 * 109.47635 * 179.97438 * 22 21 9 24 24 C 1.38235 * 120.00273 * 89.99495 * 23 22 21 25 25 C 1.38234 * 120.00220 * 179.97438 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38238 * 119.99747 * 359.50225 * 26 25 24 28 28 C 1.38234 * 120.00083 * 0.44989 * 27 26 25 29 29 H 1.09003 * 109.46815 * 274.30631 * 1 2 3 30 30 H 1.08993 * 109.47024 * 34.31239 * 1 2 3 31 31 H 1.09002 * 109.47134 * 154.30940 * 1 2 3 32 32 H 1.08999 * 109.47257 * 205.68905 * 3 2 1 33 33 H 1.08998 * 109.46988 * 325.68838 * 3 2 1 34 34 H 1.08998 * 109.46565 * 85.69244 * 3 2 1 35 35 H 1.08999 * 117.50042 * 145.01704 * 4 2 1 36 36 H 1.09003 * 117.50009 * 0.02562 * 4 2 1 37 37 H 1.09001 * 109.47067 * 29.99776 * 10 9 7 38 38 H 1.09003 * 109.47380 * 149.99155 * 10 9 7 39 39 H 1.09001 * 109.47082 * 300.00064 * 11 10 9 40 40 H 1.08999 * 109.46872 * 59.99572 * 11 10 9 41 41 H 0.96999 * 120.00089 * 359.97438 * 12 11 10 42 42 H 0.97000 * 120.00525 * 180.02562 * 16 15 13 43 43 H 1.09003 * 109.47365 * 330.00607 * 21 9 7 44 44 H 1.08999 * 109.47464 * 210.00432 * 21 9 7 45 45 H 1.08999 * 109.47580 * 59.99602 * 22 21 9 46 46 H 1.09009 * 109.47230 * 299.99989 * 22 21 9 47 47 H 1.07999 * 119.99770 * 359.97438 * 24 23 22 48 48 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 49 49 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 50 50 H 1.07999 * 119.99927 * 180.28388 * 27 26 25 51 51 H 1.08002 * 120.00281 * 179.83134 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1211 0.7649 6 1 3.1713 -0.8751 1.2686 7 6 1.3720 -2.1407 1.4607 8 8 0.1639 -2.0534 1.4011 9 7 1.9415 -3.1497 2.1493 10 6 1.1012 -4.1406 2.8262 11 6 0.8092 -3.6723 4.2531 12 7 -0.0316 -4.6629 4.9298 13 6 -0.4244 -4.4571 6.2253 14 1 -0.1140 -3.5647 6.7485 15 6 -1.2216 -5.3955 6.8664 16 7 -1.5994 -6.4833 6.2291 17 14 -1.7568 -5.1150 8.6339 18 1 -2.5430 -3.8581 8.7195 19 1 -2.5959 -6.2546 9.0838 20 1 -0.5577 -5.0090 9.5034 21 6 3.4009 -3.2554 2.2209 22 6 3.9095 -2.4791 3.4372 23 6 5.4107 -2.5883 3.5113 24 6 6.2041 -1.6537 2.8728 25 6 7.5812 -1.7536 2.9412 26 6 8.1648 -2.7916 3.6432 27 6 7.3714 -3.7238 4.2855 28 6 5.9943 -3.6233 4.2179 29 1 -0.3633 0.0772 1.0248 30 1 -0.3633 0.8488 -0.5793 31 1 -0.3633 -0.9261 -0.4455 32 1 3.1824 1.3084 -0.4455 33 1 1.5813 2.0742 -0.5793 34 1 2.2773 1.7412 1.0248 35 1 3.1715 -0.8752 -1.2684 36 1 1.6112 -1.8583 -1.2687 37 1 0.1636 -4.2543 2.2820 38 1 1.6216 -5.0979 2.8572 39 1 1.7468 -3.5586 4.7973 40 1 0.2889 -2.7150 4.2220 41 1 -0.3107 -5.4642 4.4599 42 1 -2.1568 -7.1389 6.6768 43 1 3.8404 -2.8391 1.3145 44 1 3.6852 -4.3036 2.3142 45 1 3.4701 -2.8953 4.3438 46 1 3.6253 -1.4308 3.3440 47 1 5.7482 -0.8454 2.3204 48 1 8.2010 -1.0231 2.4426 49 1 9.2406 -2.8722 3.6931 50 1 7.8273 -4.5321 4.8378 51 1 5.3744 -4.3531 4.7173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162773909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:11 Heat of formation + Delta-G solvation = 2.008683 kcal Electronic energy + Delta-G solvation = -28428.633915 eV Core-core repulsion = 24713.982341 eV Total energy + Delta-G solvation = -3714.651574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53601 -40.10094 -38.68597 -37.28279 -36.42022 -34.10707 -33.19317 -31.70205 -30.76845 -29.88106 -28.82443 -28.31554 -26.20840 -25.16273 -24.15611 -23.39134 -22.94208 -21.78650 -20.77122 -19.55049 -19.23065 -18.31878 -17.58412 -17.08526 -16.65295 -16.33142 -16.05926 -15.83408 -15.72417 -15.33356 -15.14368 -14.93793 -14.77100 -14.47151 -14.36623 -14.20040 -14.07124 -14.04413 -13.65483 -13.40266 -13.26281 -13.04720 -12.89083 -12.82552 -12.65164 -12.63417 -12.49653 -12.18733 -12.13582 -12.08635 -11.94565 -11.79964 -11.66278 -11.13888 -10.97351 -10.79573 -10.42429 -9.93539 -9.75111 -9.42845 -9.08666 -7.99952 -5.30860 0.48994 0.57071 1.43403 1.47723 1.49257 1.54000 1.90696 2.53386 2.80000 2.94515 3.32829 3.42645 3.68356 3.83363 3.86412 3.92490 4.06466 4.09605 4.14749 4.19220 4.21507 4.22758 4.25558 4.37651 4.39204 4.47533 4.55603 4.61897 4.67518 4.72226 4.83618 4.86274 4.86914 4.94494 5.02798 5.04382 5.08372 5.11987 5.12776 5.14604 5.23896 5.30726 5.34575 5.40116 5.52570 5.56274 5.64877 5.70099 5.79367 6.19312 6.21302 6.41153 7.20724 7.27426 7.98895 8.24719 9.23234 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007298 B = 0.003779 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3835.947873 B = 7407.765842 C =10484.985149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.103 4.103 3 C -0.110 4.110 4 C -0.128 4.128 5 C -0.192 4.192 6 H 0.147 0.853 7 C 0.531 3.469 8 O -0.574 6.574 9 N -0.602 5.602 10 C 0.123 3.877 11 C 0.152 3.848 12 N -0.742 5.742 13 C -0.253 4.253 14 H 0.071 0.929 15 C -0.070 4.070 16 N -0.967 5.967 17 Si 0.976 3.024 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.274 1.274 21 C 0.120 3.880 22 C -0.098 4.098 23 C -0.085 4.085 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.131 4.131 27 C -0.129 4.129 28 C -0.134 4.134 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.031 0.969 40 H -0.004 1.004 41 H 0.375 0.625 42 H 0.254 0.746 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.141 0.859 48 H 0.145 0.855 49 H 0.140 0.860 50 H 0.131 0.869 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.500 13.557 -15.202 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C -0.167 4.167 4 C -0.165 4.165 5 C -0.212 4.212 6 H 0.165 0.835 7 C 0.321 3.679 8 O -0.453 6.453 9 N -0.333 5.333 10 C -0.001 4.001 11 C 0.024 3.976 12 N -0.386 5.386 13 C -0.384 4.384 14 H 0.089 0.911 15 C -0.263 4.263 16 N -0.617 5.617 17 Si 0.804 3.196 18 H -0.207 1.207 19 H -0.216 1.216 20 H -0.199 1.199 21 C -0.002 4.002 22 C -0.136 4.136 23 C -0.085 4.085 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.149 4.149 27 C -0.147 4.147 28 C -0.152 4.152 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.049 0.951 40 H 0.014 0.986 41 H 0.207 0.793 42 H 0.063 0.937 43 H 0.127 0.873 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.159 0.841 48 H 0.163 0.837 49 H 0.157 0.843 50 H 0.149 0.851 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.855 13.675 -15.085 29.870 hybrid contribution -1.069 -0.808 1.366 1.914 sum 20.786 12.867 -13.718 28.032 Atomic orbital electron populations 1.21259 0.92852 1.00858 1.00816 1.21694 0.94647 0.92170 1.01843 1.21394 1.00875 0.92011 1.02457 1.23314 1.03632 1.00154 0.89388 1.22440 1.02126 0.99993 0.96664 0.83512 1.20505 0.87961 0.81402 0.77991 1.90720 1.16828 1.74898 1.62873 1.47936 1.07664 1.26935 1.50746 1.21336 0.95476 0.91615 0.91695 1.20995 0.93141 0.91311 0.92110 1.42388 1.60596 1.23346 1.12243 1.19529 1.25158 1.03868 0.89876 0.91116 1.25600 1.01040 0.96816 1.02828 1.69806 1.41711 1.11755 1.38452 0.85181 0.78004 0.76787 0.79600 1.20662 1.21594 1.19932 1.21774 0.77288 1.02091 0.99058 1.21058 0.91677 1.01686 0.99187 1.19755 0.94549 0.95890 0.98342 1.21298 0.93978 0.98951 0.99540 1.21466 0.94953 0.98537 0.99056 1.21466 1.00843 0.94939 0.97651 1.21380 0.93509 0.99924 0.99873 1.21256 0.95677 0.98467 0.99802 0.94419 0.91587 0.93967 0.89945 0.91100 0.92252 0.84347 0.89676 0.92223 0.89070 0.95124 0.98594 0.79294 0.93733 0.87312 0.89654 0.92230 0.90337 0.84133 0.83746 0.84263 0.85123 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.57 8.09 71.98 0.58 -1.99 16 2 C -0.10 -1.97 2.70 -52.18 -0.14 -2.11 16 3 C -0.11 -1.41 9.85 71.98 0.71 -0.70 16 4 C -0.13 -2.01 9.52 30.60 0.29 -1.72 16 5 C -0.19 -3.83 4.52 -11.54 -0.05 -3.88 16 6 H 0.15 2.14 6.48 -2.39 -0.02 2.13 16 7 C 0.53 16.11 7.44 87.66 0.65 16.76 16 8 O -0.57 -22.83 12.68 -3.03 -0.04 -22.87 16 9 N -0.60 -17.17 2.47 -821.83 -2.03 -19.20 16 10 C 0.12 4.44 5.56 86.38 0.48 4.92 16 11 C 0.15 6.75 6.58 86.38 0.57 7.31 16 12 N -0.74 -40.54 5.60 -343.46 -1.92 -42.46 16 13 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 14 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 15 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 16 N -0.97 -60.88 13.06 21.65 0.28 -60.59 16 17 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 18 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 C 0.12 2.43 5.07 86.38 0.44 2.87 16 22 C -0.10 -2.05 5.56 29.85 0.17 -1.88 16 23 C -0.08 -1.59 5.13 -19.87 -0.10 -1.70 16 24 C -0.12 -1.77 9.70 22.27 0.22 -1.55 16 25 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 26 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 27 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 28 C -0.13 -2.73 9.70 22.27 0.22 -2.52 16 29 H 0.04 1.18 7.26 -2.39 -0.02 1.16 16 30 H 0.07 1.36 7.92 -2.39 -0.02 1.34 16 31 H 0.04 1.24 7.02 -2.39 -0.02 1.22 16 32 H 0.08 0.66 7.90 -2.39 -0.02 0.64 16 33 H 0.07 0.83 7.92 -2.39 -0.02 0.81 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.14 1.20 8.05 -2.39 -0.02 1.18 16 36 H 0.08 1.61 8.05 -2.39 -0.02 1.59 16 37 H 0.06 2.46 7.42 -2.39 -0.02 2.45 16 38 H 0.09 3.00 7.89 -2.39 -0.02 2.98 16 39 H 0.03 1.31 6.26 -2.39 -0.01 1.29 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.38 21.41 7.67 -92.71 -0.71 20.70 16 42 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.11 1.61 6.64 -2.39 -0.02 1.60 16 44 H 0.09 1.70 7.89 -2.39 -0.02 1.68 16 45 H 0.06 1.59 6.21 -2.39 -0.01 1.58 16 46 H 0.08 1.56 7.40 -2.38 -0.02 1.54 16 47 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 48 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 49 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 50 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 51 H 0.11 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -75.77 410.44 4.51 -71.25 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.20 Total: 33.37 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 6.00 Total: -9.08 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -3.67 Total: -122.26 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.04 Total: -22.87 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -75.77 4.51 -71.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162773909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.261 kcal (2) G-P(sol) polarization free energy of solvation -75.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds