Wall clock time and date at job start Tue Mar 31 2020 16:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47192 * 2 1 4 4 C 1.50696 * 115.55066 * 306.80053 * 3 2 1 5 5 O 1.21275 * 120.00382 * 98.99398 * 4 3 2 6 6 N 1.34780 * 119.99867 * 278.99096 * 4 3 2 7 7 C 1.46500 * 119.99966 * 172.99974 * 6 4 3 8 8 C 1.52999 * 109.46918 * 270.00299 * 7 6 4 9 9 N 1.46500 * 109.46918 * 180.02562 * 8 7 6 10 10 C 1.36938 * 119.99781 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00558 * 0.02562 * 10 9 8 12 12 C 1.38821 * 119.99908 * 180.02562 * 10 9 8 13 13 N 1.31617 * 119.99678 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99889 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47076 * 60.00044 * 14 12 10 16 16 H 1.48500 * 109.46920 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47629 * 299.99760 * 14 12 10 18 18 C 1.46500 * 120.00098 * 353.00340 * 6 4 3 19 19 C 1.53004 * 109.47062 * 263.81776 * 18 6 4 20 20 C 1.50697 * 109.47479 * 185.26585 * 19 18 6 21 21 C 1.38238 * 119.99687 * 264.96310 * 20 19 18 22 22 C 1.38233 * 119.99678 * 180.32093 * 21 20 19 23 23 C 1.38232 * 120.00290 * 359.93025 * 22 21 20 24 24 C 1.38232 * 120.00127 * 0.06370 * 23 22 21 25 25 C 1.38230 * 120.00002 * 85.23195 * 20 19 18 26 26 C 1.53002 * 117.49699 * 92.46972 * 3 2 1 27 27 C 1.53008 * 117.49581 * 161.12825 * 3 2 1 28 28 H 1.09002 * 109.46876 * 305.97149 * 1 2 3 29 29 H 1.09003 * 109.47322 * 65.96980 * 1 2 3 30 30 H 1.09000 * 109.47194 * 185.97124 * 1 2 3 31 31 H 1.09004 * 109.47190 * 239.99838 * 2 1 3 32 32 H 1.09005 * 109.47039 * 120.00052 * 2 1 3 33 33 H 1.09000 * 109.46971 * 30.00030 * 7 6 4 34 34 H 1.08999 * 109.47381 * 150.00301 * 7 6 4 35 35 H 1.09000 * 109.47080 * 299.99664 * 8 7 6 36 36 H 1.08995 * 109.47545 * 60.00017 * 8 7 6 37 37 H 0.96993 * 120.00139 * 0.02562 * 9 8 7 38 38 H 0.97005 * 119.99747 * 180.02562 * 13 12 10 39 39 H 1.08992 * 109.47480 * 143.81680 * 18 6 4 40 40 H 1.09000 * 109.47454 * 23.81073 * 18 6 4 41 41 H 1.08995 * 109.47150 * 65.26006 * 19 18 6 42 42 H 1.09004 * 109.46701 * 305.26122 * 19 18 6 43 43 H 1.08000 * 120.00349 * 0.27115 * 21 20 19 44 44 H 1.07999 * 119.99692 * 179.97438 * 22 21 20 45 45 H 1.08003 * 120.00154 * 180.02562 * 23 22 21 46 46 H 1.08000 * 120.00449 * 179.97438 * 24 23 22 47 47 H 1.07999 * 120.00501 * 359.72933 * 25 20 19 48 48 H 1.08996 * 117.49710 * 215.00124 * 26 3 2 49 49 H 1.09005 * 117.49988 * 0.02607 * 26 3 2 50 50 H 1.08998 * 117.49900 * 359.97438 * 27 3 2 51 51 H 1.09005 * 117.49443 * 144.97289 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4888 2.3268 -1.0887 5 8 0.5732 3.0850 -0.8487 6 7 2.0133 2.2750 -2.3291 7 6 1.3823 3.0177 -3.4229 8 6 0.3376 2.1319 -4.1047 9 7 -0.2931 2.8744 -5.1988 10 6 -1.2658 2.2805 -5.9579 11 1 -1.5684 1.2648 -5.7498 12 6 -1.8630 2.9839 -6.9951 13 7 -1.4939 4.2214 -7.2490 14 14 -3.1904 2.1739 -8.0301 15 1 -4.3283 1.7840 -7.1590 16 1 -3.6637 3.1292 -9.0639 17 1 -2.6351 0.9650 -8.6897 18 6 3.2146 1.4760 -2.5837 19 6 4.4493 2.3776 -2.5224 20 6 5.6703 1.5844 -2.9108 21 6 6.4556 1.0018 -1.9336 22 6 7.5794 0.2797 -2.2895 23 6 7.9171 0.1391 -3.6225 24 6 7.1318 0.7216 -4.5997 25 6 6.0082 1.4441 -4.2438 26 6 2.3306 2.0890 1.3559 27 6 3.4863 1.6804 0.4390 28 1 -0.3633 0.6037 0.8317 29 1 -0.3634 0.4185 -0.9386 30 1 -0.3633 -1.0221 0.1069 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.8983 3.9095 -3.0247 34 1 2.1409 3.3096 -4.1491 35 1 0.8216 1.2401 -4.5029 36 1 -0.4210 1.8401 -3.3785 37 1 -0.0211 3.7864 -5.3860 38 1 -1.9115 4.7131 -7.9735 39 1 3.1457 1.0209 -3.5717 40 1 3.2978 0.6943 -1.8286 41 1 4.5709 2.7587 -1.5085 42 1 4.3240 3.2125 -3.2119 43 1 6.1916 1.1113 -0.8921 44 1 8.1931 -0.1751 -1.5260 45 1 8.7949 -0.4253 -3.9006 46 1 7.3959 0.6121 -5.6412 47 1 5.3947 1.8992 -5.0072 48 1 2.1231 3.1539 1.4605 49 1 2.1588 1.4865 2.2480 50 1 4.0742 0.8093 0.7282 51 1 4.0392 2.4763 -0.0600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162918381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:01 Heat of formation + Delta-G solvation = 1.783890 kcal Electronic energy + Delta-G solvation = -28750.192823 eV Core-core repulsion = 25035.531501 eV Total energy + Delta-G solvation = -3714.661322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64172 -40.04562 -38.22086 -37.47117 -36.39220 -34.16871 -33.12870 -32.87535 -31.68097 -30.17576 -28.94798 -26.33006 -25.12513 -24.92927 -23.75828 -23.64065 -23.15580 -22.36994 -21.68458 -19.68296 -19.08963 -17.84436 -17.60547 -17.36440 -16.87910 -16.45963 -16.08604 -16.05429 -15.77442 -15.49712 -15.22684 -14.98049 -14.78735 -14.69951 -14.39066 -14.22383 -14.05016 -14.03636 -13.63424 -13.24943 -13.16369 -13.05302 -12.88623 -12.79987 -12.62461 -12.48442 -12.38517 -12.19749 -12.17596 -12.01647 -11.90639 -11.81353 -11.53833 -11.32398 -11.00760 -10.92304 -10.64457 -9.94615 -9.72944 -9.41540 -9.10575 -8.00351 -5.31696 0.50559 0.59187 1.43645 1.48137 1.53601 1.55586 1.87483 2.53255 2.73253 2.95873 3.32289 3.39555 3.65644 3.81414 3.91501 3.96019 4.00322 4.05136 4.10765 4.14320 4.20706 4.25406 4.34060 4.37058 4.39788 4.48750 4.49482 4.52826 4.62497 4.66178 4.72434 4.77664 4.90017 4.93708 4.95939 5.02988 5.05953 5.06615 5.11100 5.16602 5.21786 5.26846 5.33234 5.36204 5.39962 5.51609 5.66679 5.72274 5.80200 6.20517 6.21310 6.38946 7.15028 7.26756 7.97412 8.23693 9.22790 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008969 B = 0.003475 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.980396 B = 8055.622843 C =10307.987965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.070 4.070 3 C -0.169 4.169 4 C 0.545 3.455 5 O -0.584 6.584 6 N -0.599 5.599 7 C 0.121 3.879 8 C 0.153 3.847 9 N -0.742 5.742 10 C -0.254 4.254 11 H 0.072 0.928 12 C -0.071 4.071 13 N -0.967 5.967 14 Si 0.978 3.022 15 H -0.280 1.280 16 H -0.290 1.290 17 H -0.273 1.273 18 C 0.115 3.885 19 C -0.096 4.096 20 C -0.085 4.085 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.149 4.149 27 C -0.144 4.144 28 H 0.050 0.950 29 H 0.017 0.983 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.028 0.972 36 H -0.003 1.003 37 H 0.375 0.625 38 H 0.254 0.746 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.137 0.863 46 H 0.128 0.872 47 H 0.115 0.885 48 H 0.078 0.922 49 H 0.125 0.875 50 H 0.139 0.861 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.655 -11.733 17.245 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.173 4.173 4 C 0.334 3.666 5 O -0.463 6.463 6 N -0.330 5.330 7 C -0.003 4.003 8 C 0.025 3.975 9 N -0.385 5.385 10 C -0.385 4.385 11 H 0.090 0.910 12 C -0.264 4.264 13 N -0.617 5.617 14 Si 0.806 3.194 15 H -0.206 1.206 16 H -0.216 1.216 17 H -0.198 1.198 18 C -0.007 4.007 19 C -0.134 4.134 20 C -0.086 4.086 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.152 4.152 26 C -0.187 4.187 27 C -0.180 4.180 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.015 0.985 37 H 0.207 0.793 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.155 0.845 46 H 0.146 0.854 47 H 0.133 0.867 48 H 0.097 0.903 49 H 0.144 0.856 50 H 0.157 0.843 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 22.061 -11.471 17.306 30.295 hybrid contribution -1.256 0.615 -1.301 1.910 sum 20.804 -10.856 16.006 28.405 Atomic orbital electron populations 1.21728 0.96836 1.02041 1.00343 1.21056 0.94842 0.90552 1.04328 1.21429 1.02723 0.97207 0.95893 1.20389 0.81393 0.81670 0.83125 1.90685 1.31759 1.41423 1.82458 1.47901 1.28381 1.49105 1.07623 1.21303 0.95758 0.94419 0.88809 1.20894 0.93212 0.94556 0.88804 1.42371 1.45167 1.15140 1.35847 1.19544 1.12539 0.97460 1.09004 0.90990 1.25631 1.02871 0.96971 1.00894 1.69815 1.46868 1.11287 1.33738 0.85156 0.78843 0.77391 0.78024 1.20627 1.21631 1.19842 1.21824 0.81743 0.93574 1.03598 1.21098 0.91395 0.97594 1.03300 1.19740 0.96401 0.98867 0.93548 1.21339 0.94861 0.97355 0.99917 1.21473 0.97254 0.98739 0.96648 1.21458 1.00242 0.99895 0.93390 1.21372 0.95250 0.97890 1.00418 1.21257 0.97821 0.99944 0.96217 1.23118 1.01751 1.01035 0.92747 1.23569 0.88714 1.04853 1.00908 0.93082 0.96408 0.90688 0.90654 0.87445 0.92241 0.89068 0.95425 0.98460 0.79262 0.93721 0.90796 0.87264 0.89080 0.91730 0.83724 0.83787 0.84497 0.85368 0.86733 0.90349 0.85646 0.84254 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.52 71.98 0.69 -2.88 16 2 C -0.07 -1.21 5.76 30.59 0.18 -1.04 16 3 C -0.17 -3.44 0.90 -52.93 -0.05 -3.49 16 4 C 0.54 16.97 5.84 87.66 0.51 17.48 16 5 O -0.58 -24.48 16.56 -3.01 -0.05 -24.53 16 6 N -0.60 -17.43 2.47 -821.83 -2.03 -19.46 16 7 C 0.12 4.45 5.60 86.38 0.48 4.93 16 8 C 0.15 6.86 6.58 86.38 0.57 7.42 16 9 N -0.74 -40.65 5.60 -343.45 -1.92 -42.58 16 10 C -0.25 -15.03 9.99 84.04 0.84 -14.19 16 11 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 12 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 13 N -0.97 -60.91 13.06 21.65 0.28 -60.62 16 14 Si 0.98 47.48 29.55 68.60 2.03 49.50 16 15 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 C 0.11 2.37 4.94 86.38 0.43 2.80 16 19 C -0.10 -1.70 5.48 29.85 0.16 -1.54 16 20 C -0.08 -1.42 5.13 -19.87 -0.10 -1.52 16 21 C -0.12 -1.50 9.68 22.27 0.22 -1.29 16 22 C -0.12 -1.49 10.05 22.27 0.22 -1.26 16 23 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 25 C -0.13 -2.54 9.72 22.27 0.22 -2.32 16 26 C -0.15 -2.52 9.85 30.62 0.30 -2.21 16 27 C -0.14 -1.77 8.20 30.62 0.25 -1.52 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.02 0.53 7.63 -2.39 -0.02 0.52 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.22 7.22 -2.38 -0.02 1.20 16 32 H 0.11 1.14 8.08 -2.38 -0.02 1.12 16 33 H 0.06 2.51 7.34 -2.39 -0.02 2.49 16 34 H 0.09 3.05 7.99 -2.39 -0.02 3.03 16 35 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.38 21.51 7.67 -92.71 -0.71 20.80 16 38 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 39 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 40 H 0.11 1.78 4.89 -2.39 -0.01 1.77 16 41 H 0.09 1.38 5.00 -2.39 -0.01 1.37 16 42 H 0.06 1.34 8.03 -2.38 -0.02 1.33 16 43 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 44 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 45 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 46 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.11 2.27 8.06 -2.91 -0.02 2.25 16 48 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.13 1.51 8.14 -2.38 -0.02 1.49 16 50 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.10 1.31 5.16 -2.38 -0.01 1.30 16 Total: -1.00 -77.41 411.95 4.33 -73.09 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.20 Total: 32.55 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 5.83 Total: -7.94 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -3.67 Total: -122.66 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.05 Total: -24.53 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -77.41 4.33 -73.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162918381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.869 kcal (2) G-P(sol) polarization free energy of solvation -77.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds