Wall clock time and date at job start Tue Mar 31 2020 16:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.46957 * 2 1 4 4 C 1.38252 * 119.99456 * 264.99994 * 3 2 1 5 5 C 1.38223 * 119.99681 * 180.02562 * 4 3 2 6 6 C 1.38251 * 119.99760 * 359.95533 * 5 4 3 7 7 C 1.38220 * 120.00406 * 359.97379 * 6 5 4 8 8 C 1.38210 * 120.00031 * 85.16577 * 3 2 1 9 9 C 1.50705 * 120.00048 * 0.04155 * 8 3 2 10 10 C 1.50698 * 109.46826 * 85.19183 * 9 8 3 11 11 O 1.21289 * 120.00117 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00194 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00455 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47049 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46781 * 175.45987 * 14 13 12 16 16 C 1.53000 * 115.55058 * 279.32098 * 15 14 13 17 17 N 1.46502 * 109.47237 * 294.95515 * 16 15 14 18 18 C 1.36938 * 120.00303 * 174.36768 * 17 16 15 19 19 H 1.08000 * 119.99450 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00327 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99938 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99954 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47105 * 90.00181 * 22 20 18 24 24 H 1.48505 * 109.46975 * 209.99689 * 22 20 18 25 25 H 1.48494 * 109.47359 * 329.99993 * 22 20 18 26 26 C 1.53005 * 117.50001 * 133.61662 * 15 14 13 27 27 C 1.52996 * 117.50272 * 64.99387 * 15 14 13 28 28 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47643 * 299.99973 * 1 2 3 30 30 H 1.08997 * 109.46905 * 60.00317 * 1 2 3 31 31 H 1.08996 * 109.47194 * 240.00126 * 2 1 3 32 32 H 1.08997 * 109.46905 * 119.99683 * 2 1 3 33 33 H 1.08002 * 120.00656 * 359.97438 * 4 3 2 34 34 H 1.07997 * 120.00228 * 179.97438 * 5 4 3 35 35 H 1.08006 * 120.00011 * 180.02562 * 6 5 4 36 36 H 1.07995 * 120.00249 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.46926 * 205.18958 * 9 8 3 38 38 H 1.08996 * 109.47442 * 325.19053 * 9 8 3 39 39 H 0.97004 * 120.00018 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.47213 * 300.00068 * 13 12 10 41 41 H 1.09001 * 109.46909 * 60.00481 * 13 12 10 42 42 H 1.09001 * 109.47095 * 295.45683 * 14 13 12 43 43 H 1.08998 * 109.47682 * 55.45623 * 14 13 12 44 44 H 1.08997 * 109.46926 * 54.95233 * 16 15 14 45 45 H 1.08998 * 109.47601 * 174.95386 * 16 15 14 46 46 H 0.96998 * 119.99840 * 354.37103 * 17 16 15 47 47 H 0.96998 * 120.00155 * 179.97438 * 21 20 18 48 48 H 1.08999 * 117.49399 * 359.97438 * 26 15 14 49 49 H 1.09000 * 117.49822 * 145.01549 * 26 15 14 50 50 H 1.08995 * 117.50251 * 214.97773 * 27 15 14 51 51 H 1.09003 * 117.49982 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0377 -1.1928 5 6 2.8223 3.3408 -1.1928 6 6 2.9539 4.0274 -0.0001 7 6 2.6239 3.4112 1.1923 8 6 2.1676 2.1061 1.1927 9 6 1.8136 1.4320 2.4933 10 6 2.9965 0.6390 2.9862 11 8 4.0255 0.6224 2.3443 12 7 2.9110 -0.0518 4.1403 13 6 4.0608 -0.8231 4.6192 14 6 3.7014 -1.5074 5.9397 15 6 4.8607 -2.4024 6.3822 16 6 4.9337 -3.7716 5.7031 17 7 3.7613 -4.5659 6.0784 18 6 3.5490 -5.7887 5.4997 19 1 4.2461 -6.1677 4.7671 20 6 2.4378 -6.5411 5.8549 21 7 1.5886 -6.0794 6.7481 22 14 2.1487 -8.2095 5.0660 23 1 2.8115 -9.2621 5.8772 24 1 0.6899 -8.4800 5.0008 25 1 2.7146 -8.2127 3.6932 26 6 5.3035 -2.3140 7.8441 27 6 6.1825 -1.7207 6.7412 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2584 1.5013 -2.1245 34 1 3.0795 3.8226 -2.1245 35 1 3.3139 5.0457 -0.0001 36 1 2.7271 3.9474 2.1240 37 1 1.5484 2.1870 3.2334 38 1 0.9673 0.7631 2.3373 39 1 2.0880 -0.0388 4.6535 40 1 4.3252 -1.5785 3.8792 41 1 4.9075 -0.1545 4.7747 42 1 3.5151 -0.7509 6.7020 43 1 2.8060 -2.1136 5.8030 44 1 4.9523 -3.6400 4.6213 45 1 5.8393 -4.2876 6.0220 46 1 3.1354 -4.2256 6.7366 47 1 0.8119 -6.6050 6.9960 48 1 4.7691 -1.6177 8.4904 49 1 5.6467 -3.2313 8.3224 50 1 7.1040 -2.2477 6.4941 51 1 6.2264 -0.6345 6.6619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165703488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:47 Heat of formation + Delta-G solvation = -16.439163 kcal Electronic energy + Delta-G solvation = -27775.212775 eV Core-core repulsion = 24059.761243 eV Total energy + Delta-G solvation = -3715.451533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.26891 -40.02513 -39.37900 -36.09226 -35.68928 -35.21640 -33.57281 -32.78301 -31.27189 -30.35140 -28.49810 -27.72616 -24.90117 -24.64518 -24.47031 -23.17403 -22.75820 -21.82528 -21.14547 -19.94667 -19.02215 -17.98428 -17.50430 -17.18545 -16.80117 -16.74198 -16.40041 -16.13045 -15.77260 -15.53365 -15.16389 -14.88997 -14.78189 -14.63000 -14.35299 -14.24416 -13.97581 -13.83296 -13.81639 -13.17766 -13.03246 -13.00449 -12.84998 -12.80000 -12.67170 -12.53036 -12.28468 -12.17166 -12.14387 -11.93205 -11.83634 -11.71316 -11.56476 -11.10531 -10.99418 -10.88340 -10.56686 -10.06807 -9.67921 -9.47165 -8.97680 -7.95015 -5.22477 0.43809 0.52616 1.46241 1.47190 1.55744 1.65907 2.22801 2.53988 2.88210 2.93674 3.37842 3.66531 3.81407 3.84272 3.85071 3.95994 3.99537 4.06181 4.08448 4.11070 4.28444 4.29980 4.34434 4.42508 4.46567 4.49620 4.52918 4.64185 4.66586 4.70480 4.75707 4.83424 4.93701 4.97387 5.01425 5.06384 5.07656 5.15282 5.19299 5.23789 5.27825 5.33662 5.36406 5.38496 5.47543 5.48834 5.60067 5.63838 5.76188 6.15728 6.27544 6.58211 7.28011 7.34789 8.10477 8.37070 9.28171 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.002679 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.259009 B =10450.781389 C =12225.820212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.080 4.080 4 C -0.134 4.134 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.117 4.117 8 C -0.080 4.080 9 C -0.101 4.101 10 C 0.511 3.489 11 O -0.579 6.579 12 N -0.721 5.721 13 C 0.135 3.865 14 C -0.076 4.076 15 C -0.139 4.139 16 C 0.188 3.812 17 N -0.734 5.734 18 C -0.246 4.246 19 H 0.068 0.932 20 C -0.070 4.070 21 N -0.965 5.965 22 Si 0.969 3.031 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.274 1.274 26 C -0.163 4.163 27 C -0.152 4.152 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.414 0.586 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.109 0.891 49 H 0.079 0.921 50 H 0.094 0.906 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 22.926 -9.206 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.080 4.080 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.135 4.135 8 C -0.080 4.080 9 C -0.140 4.140 10 C 0.299 3.701 11 O -0.458 6.458 12 N -0.373 5.373 13 C 0.011 3.989 14 C -0.114 4.114 15 C -0.140 4.140 16 C 0.062 3.938 17 N -0.377 5.377 18 C -0.378 4.378 19 H 0.086 0.914 20 C -0.263 4.263 21 N -0.615 5.615 22 Si 0.798 3.202 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.199 1.199 26 C -0.200 4.200 27 C -0.189 4.189 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.135 0.865 39 H 0.251 0.749 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.033 0.967 45 H 0.029 0.971 46 H 0.210 0.790 47 H 0.061 0.939 48 H 0.128 0.872 49 H 0.098 0.902 50 H 0.113 0.887 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.174 22.759 -9.777 24.770 hybrid contribution -0.606 -1.383 0.113 1.514 sum -0.433 21.375 -9.664 23.463 Atomic orbital electron populations 1.21739 0.93128 1.02354 1.02706 1.20555 0.97337 0.92501 1.02217 1.19902 0.98795 0.96014 0.93334 1.21248 1.00327 0.95911 0.97669 1.21425 0.99151 0.94594 0.99122 1.21397 1.00396 1.01013 0.92366 1.21261 0.98612 0.94416 0.99240 1.19338 1.00639 0.94562 0.93492 1.20791 0.96364 1.00637 0.96239 1.21032 0.89716 0.79211 0.80132 1.90707 1.33301 1.64501 1.57307 1.45995 1.17470 1.49628 1.24221 1.21115 0.88683 0.93906 0.95149 1.21094 0.96879 0.97451 0.95932 1.21416 0.97396 0.96015 0.99206 1.20220 0.89139 0.88806 0.95670 1.42413 1.26878 1.18521 1.49866 1.19578 1.05679 0.95132 1.17389 0.91393 1.25466 0.97755 1.02366 1.00691 1.69794 1.15263 1.39623 1.36839 0.85214 0.76597 0.80189 0.78215 1.21453 1.21859 1.19887 1.23010 1.03612 1.02670 0.90709 1.23048 0.93246 1.00721 1.01919 0.91940 0.91841 0.91799 0.91170 0.92942 0.85131 0.84109 0.84037 0.84728 0.85049 0.86514 0.74925 0.94390 0.91289 0.89118 0.92197 0.96684 0.97088 0.79033 0.93948 0.87244 0.90204 0.88747 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.72 71.98 0.70 -1.73 16 2 C -0.09 -1.93 5.38 29.85 0.16 -1.77 16 3 C -0.08 -1.82 5.13 -19.87 -0.10 -1.92 16 4 C -0.13 -2.74 9.68 22.27 0.22 -2.52 16 5 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 6 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 7 C -0.12 -2.30 9.68 22.27 0.22 -2.08 16 8 C -0.08 -1.74 4.37 -19.87 -0.09 -1.82 16 9 C -0.10 -1.85 5.16 29.10 0.15 -1.70 16 10 C 0.51 13.24 7.04 87.66 0.62 13.86 16 11 O -0.58 -20.36 16.03 -3.06 -0.05 -20.41 16 12 N -0.72 -16.85 5.56 -463.05 -2.57 -19.42 16 13 C 0.14 3.75 5.51 86.38 0.48 4.22 16 14 C -0.08 -2.10 5.24 30.59 0.16 -1.94 16 15 C -0.14 -4.34 1.52 -52.18 -0.08 -4.42 16 16 C 0.19 7.77 6.10 86.38 0.53 8.29 16 17 N -0.73 -37.36 5.30 -343.45 -1.82 -39.18 16 18 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 19 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 20 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 21 N -0.96 -58.34 13.06 21.65 0.28 -58.06 16 22 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 26 C -0.16 -4.50 9.90 30.60 0.30 -4.20 16 27 C -0.15 -3.74 9.57 30.59 0.29 -3.45 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.98 6.82 -2.39 -0.02 0.96 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.50 8.05 -2.39 -0.02 1.48 16 32 H 0.05 1.34 6.42 -2.39 -0.02 1.33 16 33 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 36 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.13 1.55 8.05 -2.39 -0.02 1.53 16 38 H 0.12 1.86 5.63 -2.39 -0.01 1.84 16 39 H 0.41 7.29 8.47 -92.71 -0.79 6.50 16 40 H 0.04 1.30 7.69 -2.39 -0.02 1.28 16 41 H 0.07 1.84 7.80 -2.39 -0.02 1.82 16 42 H 0.09 2.00 7.94 -2.39 -0.02 1.98 16 43 H 0.06 2.01 7.64 -2.39 -0.02 1.99 16 44 H 0.02 0.66 7.69 -2.39 -0.02 0.64 16 45 H 0.01 0.47 8.09 -2.39 -0.02 0.46 16 46 H 0.38 20.09 7.46 -92.71 -0.69 19.40 16 47 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.11 2.57 8.08 -2.39 -0.02 2.55 16 49 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 50 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 51 H 0.11 2.30 7.98 -2.39 -0.02 2.28 16 Total: -1.00 -73.01 415.16 2.62 -70.40 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -0.55 Total: 40.26 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 5.30 Total: -22.05 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -4.11 Total: -116.67 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -73.01 2.62 -70.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165703488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.957 kcal (2) G-P(sol) polarization free energy of solvation -73.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds