Wall clock time and date at job start Tue Mar 31 2020 16:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47241 * 2 1 4 4 C 1.38259 * 119.99663 * 270.02682 * 3 2 1 5 5 C 1.38212 * 119.99568 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.00298 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99850 * 0.02863 * 6 5 4 8 8 C 1.50702 * 120.00009 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47090 * 269.95440 * 8 7 6 10 10 O 1.21283 * 120.00438 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00075 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00019 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46901 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47309 * 175.02248 * 13 12 11 15 15 C 1.53002 * 115.54623 * 278.03544 * 14 13 12 16 16 N 1.46499 * 109.46997 * 303.89181 * 15 14 13 17 17 C 1.36935 * 120.00191 * 175.59320 * 16 15 14 18 18 H 1.08001 * 119.99960 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00458 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99373 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00439 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46839 * 60.00685 * 21 19 17 23 23 H 1.48504 * 109.47471 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47698 * 300.00955 * 21 19 17 25 25 C 1.52991 * 117.50360 * 132.32156 * 14 13 12 26 26 C 1.52996 * 60.00233 * 252.51247 * 25 14 13 27 27 C 1.38209 * 119.99812 * 89.99986 * 3 2 1 28 28 H 1.09011 * 109.46984 * 300.00016 * 1 2 3 29 29 H 1.09000 * 109.47375 * 59.99909 * 1 2 3 30 30 H 1.08999 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47061 * 239.99661 * 2 1 3 32 32 H 1.09000 * 109.47375 * 120.00091 * 2 1 3 33 33 H 1.07995 * 120.00095 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.99896 * 180.02562 * 5 4 3 35 35 H 1.07999 * 119.99945 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47282 * 29.95335 * 8 7 6 37 37 H 1.08994 * 109.47444 * 149.95648 * 8 7 6 38 38 H 0.97003 * 119.99939 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46767 * 299.99889 * 12 11 9 40 40 H 1.09000 * 109.47746 * 59.99706 * 12 11 9 41 41 H 1.09002 * 109.46958 * 295.01555 * 13 12 11 42 42 H 1.08993 * 109.47599 * 55.02283 * 13 12 11 43 43 H 1.08997 * 109.47587 * 63.89483 * 15 14 13 44 44 H 1.09005 * 109.47004 * 183.89527 * 15 14 13 45 45 H 0.96997 * 120.00332 * 355.59857 * 16 15 14 46 46 H 0.97002 * 119.99641 * 179.97438 * 20 19 17 47 47 H 1.08998 * 117.50110 * 0.02562 * 25 14 13 48 48 H 1.09000 * 117.50333 * 145.02038 * 25 14 13 49 49 H 1.08999 * 117.50042 * 252.51124 * 26 25 14 50 50 H 1.08997 * 117.50386 * 107.48802 * 26 25 14 51 51 H 1.07995 * 120.00442 * 359.72364 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2622 2.0727 -1.1974 5 6 2.7225 3.3760 -1.1974 6 6 2.9524 4.0279 -0.0001 7 6 2.7227 3.3762 1.1969 8 6 2.9739 4.0866 2.5020 9 6 4.3970 3.8494 2.9372 10 8 5.1349 3.1708 2.2546 11 7 4.8503 4.3923 4.0845 12 6 6.2339 4.1622 4.5073 13 6 6.4889 4.8834 5.8324 14 6 7.8927 4.5427 6.3366 15 6 8.0218 3.2117 7.0800 16 7 7.0840 3.1879 8.2053 17 6 6.9553 2.0563 8.9655 18 1 7.5455 1.1814 8.7359 19 6 6.0671 2.0339 10.0321 20 7 5.3483 3.1003 10.3123 21 14 5.8910 0.4900 11.0687 22 1 7.2001 0.1558 11.6851 23 1 4.8856 0.7228 12.1366 24 1 5.4471 -0.6360 10.2085 25 6 8.7765 5.7013 6.8025 26 6 9.0789 4.9920 5.4811 27 6 2.2627 2.0723 1.1969 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0822 1.5636 -2.1326 34 1 2.9017 3.8854 -2.1327 35 1 3.3117 5.0464 -0.0001 36 1 2.8072 5.1559 2.3716 37 1 2.2930 3.7027 3.2616 38 1 4.2605 4.9360 4.6300 39 1 6.4008 3.0930 4.6380 40 1 6.9147 4.5460 3.7475 41 1 6.4084 5.9599 5.6815 42 1 5.7511 4.5634 6.5681 43 1 7.7935 2.3916 6.3994 44 1 9.0400 3.1013 7.4533 45 1 6.5542 3.9737 8.4118 46 1 4.7273 3.0846 11.0573 47 1 8.3579 6.7063 6.7503 48 1 9.4502 5.5157 7.6391 49 1 9.9515 4.3395 5.4482 50 1 8.8593 5.5302 4.5591 51 1 2.0784 1.5648 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165828576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:51 Heat of formation + Delta-G solvation = -18.103892 kcal Electronic energy + Delta-G solvation = -27213.012960 eV Core-core repulsion = 23497.489240 eV Total energy + Delta-G solvation = -3715.523721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.10671 -40.05318 -39.42956 -36.09562 -35.73305 -35.31387 -33.40363 -32.80007 -31.26906 -30.35509 -28.49013 -27.73048 -24.82694 -24.67337 -24.57686 -23.19583 -22.80661 -21.88275 -20.99536 -19.90750 -19.04303 -17.96817 -17.50290 -16.99262 -16.94386 -16.72186 -16.39838 -16.07353 -15.83759 -15.52981 -15.14526 -14.91043 -14.75658 -14.57599 -14.51673 -14.20043 -14.00561 -13.92519 -13.78318 -13.15915 -13.02090 -12.98525 -12.85591 -12.77297 -12.60645 -12.53979 -12.29041 -12.16088 -12.13620 -11.93579 -11.84427 -11.70795 -11.63741 -11.11718 -10.99649 -10.89682 -10.54226 -10.06988 -9.68251 -9.49219 -8.97811 -7.95213 -5.22642 0.42712 0.51395 1.45885 1.48258 1.54381 1.65915 2.22843 2.54086 2.87637 2.93177 3.37687 3.67027 3.79797 3.82656 3.84276 3.96480 3.99334 4.05322 4.10793 4.22660 4.26951 4.29564 4.36935 4.42270 4.48213 4.49668 4.57623 4.60561 4.65916 4.69183 4.78043 4.83423 4.93842 4.97521 5.01901 5.07275 5.07409 5.18791 5.20284 5.22719 5.27302 5.33303 5.36495 5.38240 5.47307 5.48719 5.57862 5.66725 5.73563 6.14832 6.27342 6.58203 7.27766 7.34556 8.10159 8.36772 9.27747 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010269 B = 0.002478 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.968928 B =11296.876506 C =13323.267700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.124 4.124 7 C -0.076 4.076 8 C -0.097 4.097 9 C 0.510 3.490 10 O -0.582 6.582 11 N -0.720 5.720 12 C 0.136 3.864 13 C -0.077 4.077 14 C -0.141 4.141 15 C 0.188 3.812 16 N -0.735 5.735 17 C -0.248 4.248 18 H 0.068 0.932 19 C -0.070 4.070 20 N -0.964 5.964 21 Si 0.969 3.031 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.281 1.281 25 C -0.162 4.162 26 C -0.152 4.152 27 C -0.125 4.125 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.119 0.881 38 H 0.415 0.585 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.013 0.987 44 H 0.013 0.987 45 H 0.378 0.622 46 H 0.252 0.748 47 H 0.109 0.891 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.113 0.887 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 5.419 -23.078 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.142 4.142 7 C -0.076 4.076 8 C -0.136 4.136 9 C 0.297 3.703 10 O -0.462 6.462 11 N -0.373 5.373 12 C 0.012 3.988 13 C -0.115 4.115 14 C -0.142 4.142 15 C 0.061 3.939 16 N -0.378 5.378 17 C -0.380 4.380 18 H 0.086 0.914 19 C -0.263 4.263 20 N -0.615 5.615 21 Si 0.798 3.202 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.199 4.199 26 C -0.190 4.190 27 C -0.144 4.144 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.137 0.863 38 H 0.251 0.749 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.031 0.969 44 H 0.031 0.969 45 H 0.211 0.789 46 H 0.061 0.939 47 H 0.128 0.872 48 H 0.101 0.899 49 H 0.114 0.886 50 H 0.131 0.869 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.925 4.760 -23.495 24.952 hybrid contribution -0.332 -0.568 1.428 1.572 sum -7.257 4.192 -22.067 23.605 Atomic orbital electron populations 1.21710 0.93722 1.02394 1.02037 1.20586 0.96980 0.91742 1.03085 1.20124 0.98970 0.97023 0.93147 1.21285 1.00169 0.95293 0.97921 1.21399 0.98991 0.95137 0.98591 1.21222 1.00067 1.00839 0.92105 1.19493 0.99035 0.94535 0.94567 1.20738 0.92372 1.04394 0.96125 1.21112 0.90412 0.78433 0.80301 1.90702 1.59767 1.40412 1.55276 1.45996 1.13950 1.53377 1.23928 1.21106 0.82580 0.99271 0.95848 1.21104 0.94823 1.00631 0.94930 1.21416 0.92775 0.95850 1.04159 1.20221 0.91969 0.93824 0.87874 1.42423 1.48012 1.14059 1.33270 1.19546 1.17949 0.92873 1.07610 0.91404 1.25472 0.99673 1.00418 1.00693 1.69789 1.29785 1.29801 1.32075 0.85281 0.77254 0.79391 0.78248 1.20589 1.21776 1.20745 1.23055 1.02289 0.96588 0.97997 1.23041 0.97933 1.02936 0.95077 1.21053 1.00636 0.94548 0.98124 0.93161 0.92184 0.91283 0.90087 0.91677 0.84395 0.83942 0.84932 0.84814 0.86313 0.74888 0.94598 0.91240 0.89112 0.92171 0.96864 0.96881 0.78939 0.93931 0.87239 0.89909 0.88638 0.86874 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 71.98 0.71 -1.26 16 2 C -0.09 -1.47 6.06 29.85 0.18 -1.29 16 3 C -0.09 -1.95 5.13 -19.86 -0.10 -2.05 16 4 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 5 C -0.12 -2.29 10.05 22.27 0.22 -2.06 16 6 C -0.12 -2.53 9.70 22.27 0.22 -2.32 16 7 C -0.08 -1.70 4.37 -19.86 -0.09 -1.79 16 8 C -0.10 -1.80 5.83 29.10 0.17 -1.63 16 9 C 0.51 13.63 7.82 87.66 0.69 14.31 16 10 O -0.58 -21.06 16.03 -3.04 -0.05 -21.11 16 11 N -0.72 -17.55 5.56 -463.06 -2.57 -20.12 16 12 C 0.14 3.89 5.49 86.38 0.47 4.37 16 13 C -0.08 -2.19 5.20 30.59 0.16 -2.04 16 14 C -0.14 -4.42 1.65 -52.18 -0.09 -4.50 16 15 C 0.19 7.78 6.15 86.38 0.53 8.32 16 16 N -0.73 -37.51 5.23 -343.45 -1.80 -39.31 16 17 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 18 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 19 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 20 N -0.96 -58.25 13.06 21.65 0.28 -57.97 16 21 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 C -0.16 -4.39 9.87 30.59 0.30 -4.09 16 26 C -0.15 -3.74 9.58 30.59 0.29 -3.45 16 27 C -0.13 -2.96 9.36 22.27 0.21 -2.75 16 28 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 32 H 0.06 1.18 8.09 -2.39 -0.02 1.16 16 33 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.13 1.59 8.09 -2.39 -0.02 1.57 16 37 H 0.12 1.84 8.09 -2.39 -0.02 1.82 16 38 H 0.41 7.71 8.47 -92.71 -0.79 6.92 16 39 H 0.04 1.28 7.96 -2.39 -0.02 1.26 16 40 H 0.07 1.90 7.72 -2.39 -0.02 1.88 16 41 H 0.09 2.05 7.93 -2.39 -0.02 2.03 16 42 H 0.06 2.09 6.94 -2.39 -0.02 2.08 16 43 H 0.01 0.58 7.96 -2.39 -0.02 0.57 16 44 H 0.01 0.56 8.10 -2.38 -0.02 0.54 16 45 H 0.38 20.08 6.80 -92.71 -0.63 19.45 16 46 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 47 H 0.11 2.51 8.07 -2.39 -0.02 2.49 16 48 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.11 2.30 7.90 -2.39 -0.02 2.28 16 51 H 0.12 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -73.50 421.37 2.79 -70.71 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: -0.51 Total: 40.52 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 5.40 Total: -21.26 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -4.09 Total: -117.39 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.05 Total: -21.11 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -73.50 2.79 -70.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165828576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.605 kcal (2) G-P(sol) polarization free energy of solvation -73.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds