Wall clock time and date at job start Tue Mar 31 2020 16:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46992 * 2 1 4 4 C 1.38238 * 120.00162 * 89.99806 * 3 2 1 5 5 C 1.38230 * 120.00420 * 179.97438 * 4 3 2 6 6 C 1.38243 * 119.99852 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00110 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46892 * 90.00366 * 7 6 5 9 9 O 1.21285 * 120.00232 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00015 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00080 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47325 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47293 * 175.46035 * 12 11 10 14 14 C 1.53007 * 115.54649 * 279.31988 * 13 12 11 15 15 N 1.46496 * 109.47298 * 294.95462 * 14 13 12 16 16 C 1.36934 * 120.00139 * 174.37296 * 15 14 13 17 17 H 1.08004 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00205 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00023 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99730 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46915 * 90.00284 * 20 18 16 22 22 H 1.48500 * 109.46778 * 209.99637 * 20 18 16 23 23 H 1.48498 * 109.47466 * 329.99880 * 20 18 16 24 24 C 1.52994 * 117.49850 * 133.61812 * 13 12 11 25 25 C 1.52997 * 60.00166 * 252.50629 * 24 13 12 26 26 C 1.38239 * 119.99764 * 0.26360 * 6 5 4 27 27 C 1.38233 * 120.00321 * 270.01961 * 3 2 1 28 28 H 1.08995 * 109.47371 * 299.99776 * 1 2 3 29 29 H 1.08998 * 109.47182 * 59.99708 * 1 2 3 30 30 H 1.09005 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47371 * 240.00224 * 2 1 3 32 32 H 1.09003 * 109.47386 * 119.99585 * 2 1 3 33 33 H 1.07999 * 119.99865 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.00164 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47396 * 210.00631 * 7 6 5 36 36 H 1.09005 * 109.47278 * 330.00743 * 7 6 5 37 37 H 0.97003 * 120.00059 * 0.02562 * 10 8 7 38 38 H 1.09003 * 109.47452 * 299.99859 * 11 10 8 39 39 H 1.08995 * 109.47340 * 60.00519 * 11 10 8 40 40 H 1.09001 * 109.47143 * 295.45704 * 12 11 10 41 41 H 1.09000 * 109.47282 * 55.45889 * 12 11 10 42 42 H 1.09003 * 109.46952 * 54.95510 * 14 13 12 43 43 H 1.08995 * 109.46799 * 174.95039 * 14 13 12 44 44 H 0.97008 * 120.00204 * 354.36877 * 15 14 13 45 45 H 0.96992 * 120.00218 * 179.97438 * 19 18 16 46 46 H 1.09001 * 117.50383 * 359.97438 * 24 13 12 47 47 H 1.09005 * 117.50285 * 145.01991 * 24 13 12 48 48 H 1.08998 * 117.50374 * 252.51901 * 25 24 13 49 49 H 1.08997 * 117.50004 * 107.48357 * 25 24 13 50 50 H 1.07998 * 119.99447 * 179.72111 * 26 6 5 51 51 H 1.08001 * 119.99617 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4566 5.4481 0.0000 8 6 4.9636 5.4481 0.0000 9 8 5.5701 4.3978 -0.0005 10 7 5.6375 6.6153 -0.0006 11 6 7.1025 6.6152 -0.0012 12 6 7.6125 8.0577 -0.0010 13 6 9.1383 8.0592 0.1125 14 6 9.6950 7.8720 1.5254 15 7 9.3162 9.0181 2.3554 16 6 9.6048 9.0192 3.6940 17 1 10.1114 8.1750 4.1379 18 6 9.2463 10.1055 4.4804 19 7 8.6293 11.1345 3.9394 20 14 9.6394 10.1066 6.3066 21 1 10.9798 10.7079 6.5239 22 1 8.6166 10.9016 7.0325 23 1 9.6345 8.7113 6.8149 24 6 9.9166 8.9700 -0.8390 25 6 9.9336 7.4542 -1.0461 26 6 2.7183 3.3776 -1.1971 27 6 2.2623 2.0727 -1.1971 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0830 1.5633 2.1325 34 1 2.9042 3.8846 2.1325 35 1 3.0932 5.9620 -0.8899 36 1 3.0933 5.9620 0.8901 37 1 5.1525 7.4553 -0.0005 38 1 7.4662 6.1016 0.8888 39 1 7.4654 6.1013 -0.8912 40 1 7.3168 8.5478 -0.9287 41 1 7.1847 8.5943 0.8458 42 1 9.2869 6.9588 1.9586 43 1 10.7816 7.7989 1.4809 44 1 8.8608 9.7762 1.9568 45 1 8.3785 11.8934 4.4889 46 1 9.3418 9.5680 -1.5462 47 1 10.8256 9.4362 -0.4586 48 1 10.8535 6.9231 -0.8019 49 1 9.3698 7.0552 -1.8893 50 1 2.8940 3.8883 -2.1324 51 1 2.0816 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167351853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:57 Heat of formation + Delta-G solvation = -0.188239 kcal Electronic energy + Delta-G solvation = -26960.536578 eV Core-core repulsion = 23245.789738 eV Total energy + Delta-G solvation = -3714.746840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.16241 -39.11990 -38.19623 -35.01840 -34.60494 -33.90715 -31.69905 -31.05062 -30.76975 -29.89455 -27.34756 -25.92110 -23.92128 -22.98264 -22.88252 -22.72413 -21.75418 -20.95783 -20.31407 -18.53434 -17.12980 -16.88533 -16.55725 -16.10140 -15.77399 -15.43289 -15.20461 -14.92778 -14.41623 -14.34638 -13.99967 -13.92707 -13.72321 -13.55435 -13.34609 -13.09887 -13.05862 -12.70857 -12.30895 -12.22633 -12.12451 -11.90472 -11.87313 -11.47124 -11.40274 -11.12103 -11.04660 -10.99928 -10.94915 -10.84161 -10.58152 -10.15187 -9.90578 -9.85876 -9.63597 -9.31867 -9.01753 -8.96355 -8.84248 -8.64676 -6.89698 -5.75881 -3.03535 1.17157 1.31227 2.68727 3.18881 3.43858 3.49305 3.50719 3.70147 4.07206 4.43807 4.57347 4.61808 4.62119 4.81045 4.86985 4.89535 5.03557 5.06021 5.11451 5.12526 5.17539 5.24726 5.27217 5.33807 5.36888 5.45615 5.55169 5.58607 5.60479 5.66895 5.69405 5.78249 5.83058 5.92158 5.94107 5.95245 6.17750 6.21494 6.23357 6.27702 6.44267 6.46336 6.46957 6.47569 6.48776 6.59061 6.77408 6.85610 6.88212 7.54806 7.71281 8.27840 8.43375 9.54993 10.13394 10.49319 11.46975 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.002112 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.478481 B =13254.746470 C =14698.385556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.067 4.067 7 C -0.104 4.104 8 C 0.512 3.488 9 O -0.534 6.534 10 N -0.729 5.729 11 C 0.125 3.875 12 C -0.091 4.091 13 C -0.119 4.119 14 C 0.188 3.812 15 N -0.727 5.727 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.165 4.165 25 C -0.178 4.178 26 C -0.103 4.103 27 C -0.118 4.118 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.026 0.974 43 H 0.017 0.983 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.555 -15.528 -13.635 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.067 4.067 7 C -0.144 4.144 8 C 0.297 3.703 9 O -0.410 6.410 10 N -0.381 5.381 11 C 0.002 3.998 12 C -0.128 4.128 13 C -0.120 4.120 14 C 0.060 3.940 15 N -0.371 5.371 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.202 4.202 25 C -0.215 4.215 26 C -0.121 4.121 27 C -0.136 4.136 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.044 0.956 43 H 0.034 0.966 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.110 0.890 49 H 0.107 0.893 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.046 -16.351 -13.461 25.979 hybrid contribution -0.019 0.886 0.936 1.289 sum -15.065 -15.465 -12.525 24.959 Atomic orbital electron populations 1.21745 0.94793 1.01589 1.02200 1.20538 0.96081 0.92818 1.02823 1.19867 0.99312 0.96100 0.93266 1.20960 1.00247 0.94766 0.97495 1.20995 0.98512 0.94912 0.97493 1.19258 0.99145 0.94744 0.93593 1.20695 0.92748 0.95657 1.05310 1.20482 0.89578 0.83837 0.76380 1.90730 1.70255 1.31235 1.48794 1.46066 1.07990 1.08476 1.75531 1.21340 0.78359 0.97729 1.02335 1.21254 0.93614 0.95230 1.02749 1.21571 0.92545 1.04833 0.93075 1.20181 0.95720 0.91716 0.86380 1.42289 1.70895 1.18268 1.05674 1.19241 1.31097 1.01692 0.84768 0.91281 1.24714 1.01484 0.96780 0.98054 1.69654 1.45928 1.07831 1.34835 0.86206 0.77457 0.77240 0.85410 1.21778 1.21807 1.20798 1.22964 1.02724 0.92449 1.02042 1.22971 1.02272 0.96384 0.99904 1.20934 0.98981 0.94898 0.97281 1.20928 1.00510 0.94742 0.97422 0.92552 0.92597 0.92497 0.91126 0.91076 0.86210 0.86117 0.88052 0.87825 0.76567 0.91067 0.91895 0.92005 0.89445 0.95568 0.96575 0.78163 0.93606 0.89335 0.88602 0.88955 0.89284 0.86336 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.09 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.09 -0.83 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 5 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 6 C -0.07 -0.74 4.37 -104.62 -0.46 -1.20 16 7 C -0.10 -0.99 5.83 -29.04 -0.17 -1.16 16 8 C 0.51 6.76 7.82 -10.99 -0.09 6.68 16 9 O -0.53 -9.37 16.03 5.55 0.09 -9.28 16 10 N -0.73 -8.85 5.56 -60.30 -0.33 -9.18 16 11 C 0.13 1.78 5.51 -4.04 -0.02 1.75 16 12 C -0.09 -1.31 5.24 -26.73 -0.14 -1.45 16 13 C -0.12 -1.91 1.52 -154.51 -0.23 -2.15 16 14 C 0.19 3.82 6.10 -4.04 -0.02 3.79 16 15 N -0.73 -18.20 5.30 -59.91 -0.32 -18.51 16 16 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 20 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.16 -2.43 9.90 -26.74 -0.26 -2.69 16 25 C -0.18 -2.40 9.57 -26.73 -0.26 -2.66 16 26 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 27 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.40 3.80 8.47 -40.82 -0.35 3.46 16 38 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 39 H 0.06 0.89 7.80 -51.93 -0.41 0.48 16 40 H 0.06 0.77 7.94 -51.93 -0.41 0.36 16 41 H 0.09 1.47 7.64 -51.93 -0.40 1.07 16 42 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 43 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 44 H 0.38 10.05 7.46 -40.82 -0.30 9.74 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 47 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 48 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.09 1.07 7.98 -51.93 -0.41 0.65 16 50 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 51 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 422.33 15.07 6.36 6.36 Total: -1.00 -33.58 422.33 -11.22 -44.80 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -8.95 Total: 10.76 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -3.78 Total: -15.21 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.07 Total: -54.91 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.58 -11.22 -44.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167351853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.616 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds