Wall clock time and date at job start Tue Mar 31 2020 16:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46992 * 2 1 4 4 C 1.38238 * 120.00162 * 89.99806 * 3 2 1 5 5 C 1.38230 * 120.00420 * 179.97438 * 4 3 2 6 6 C 1.38243 * 119.99852 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00110 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46892 * 90.00366 * 7 6 5 9 9 O 1.21285 * 120.00232 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00015 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00080 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47325 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47293 * 175.46035 * 12 11 10 14 14 C 1.53007 * 115.54649 * 279.31988 * 13 12 11 15 15 N 1.46496 * 109.47298 * 294.95462 * 14 13 12 16 16 C 1.36934 * 120.00139 * 174.37296 * 15 14 13 17 17 H 1.08004 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00205 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00023 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99730 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46915 * 90.00284 * 20 18 16 22 22 H 1.48500 * 109.46778 * 209.99637 * 20 18 16 23 23 H 1.48498 * 109.47466 * 329.99880 * 20 18 16 24 24 C 1.52994 * 117.49850 * 133.61812 * 13 12 11 25 25 C 1.52997 * 60.00166 * 252.50629 * 24 13 12 26 26 C 1.38239 * 119.99764 * 0.26360 * 6 5 4 27 27 C 1.38233 * 120.00321 * 270.01961 * 3 2 1 28 28 H 1.08995 * 109.47371 * 299.99776 * 1 2 3 29 29 H 1.08998 * 109.47182 * 59.99708 * 1 2 3 30 30 H 1.09005 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47371 * 240.00224 * 2 1 3 32 32 H 1.09003 * 109.47386 * 119.99585 * 2 1 3 33 33 H 1.07999 * 119.99865 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.00164 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47396 * 210.00631 * 7 6 5 36 36 H 1.09005 * 109.47278 * 330.00743 * 7 6 5 37 37 H 0.97003 * 120.00059 * 0.02562 * 10 8 7 38 38 H 1.09003 * 109.47452 * 299.99859 * 11 10 8 39 39 H 1.08995 * 109.47340 * 60.00519 * 11 10 8 40 40 H 1.09001 * 109.47143 * 295.45704 * 12 11 10 41 41 H 1.09000 * 109.47282 * 55.45889 * 12 11 10 42 42 H 1.09003 * 109.46952 * 54.95510 * 14 13 12 43 43 H 1.08995 * 109.46799 * 174.95039 * 14 13 12 44 44 H 0.97008 * 120.00204 * 354.36877 * 15 14 13 45 45 H 0.96992 * 120.00218 * 179.97438 * 19 18 16 46 46 H 1.09001 * 117.50383 * 359.97438 * 24 13 12 47 47 H 1.09005 * 117.50285 * 145.01991 * 24 13 12 48 48 H 1.08998 * 117.50374 * 252.51901 * 25 24 13 49 49 H 1.08997 * 117.50004 * 107.48357 * 25 24 13 50 50 H 1.07998 * 119.99447 * 179.72111 * 26 6 5 51 51 H 1.08001 * 119.99617 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4566 5.4481 0.0000 8 6 4.9636 5.4481 0.0000 9 8 5.5701 4.3978 -0.0005 10 7 5.6375 6.6153 -0.0006 11 6 7.1025 6.6152 -0.0012 12 6 7.6125 8.0577 -0.0010 13 6 9.1383 8.0592 0.1125 14 6 9.6950 7.8720 1.5254 15 7 9.3162 9.0181 2.3554 16 6 9.6048 9.0192 3.6940 17 1 10.1114 8.1750 4.1379 18 6 9.2463 10.1055 4.4804 19 7 8.6293 11.1345 3.9394 20 14 9.6394 10.1066 6.3066 21 1 10.9798 10.7079 6.5239 22 1 8.6166 10.9016 7.0325 23 1 9.6345 8.7113 6.8149 24 6 9.9166 8.9700 -0.8390 25 6 9.9336 7.4542 -1.0461 26 6 2.7183 3.3776 -1.1971 27 6 2.2623 2.0727 -1.1971 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0830 1.5633 2.1325 34 1 2.9042 3.8846 2.1325 35 1 3.0932 5.9620 -0.8899 36 1 3.0933 5.9620 0.8901 37 1 5.1525 7.4553 -0.0005 38 1 7.4662 6.1016 0.8888 39 1 7.4654 6.1013 -0.8912 40 1 7.3168 8.5478 -0.9287 41 1 7.1847 8.5943 0.8458 42 1 9.2869 6.9588 1.9586 43 1 10.7816 7.7989 1.4809 44 1 8.8608 9.7762 1.9568 45 1 8.3785 11.8934 4.4889 46 1 9.3418 9.5680 -1.5462 47 1 10.8256 9.4362 -0.4586 48 1 10.8535 6.9231 -0.8019 49 1 9.3698 7.0552 -1.8893 50 1 2.8940 3.8883 -2.1324 51 1 2.0816 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167351853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:56 Heat of formation + Delta-G solvation = -19.063181 kcal Electronic energy + Delta-G solvation = -26961.355057 eV Core-core repulsion = 23245.789738 eV Total energy + Delta-G solvation = -3715.565319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.09170 -40.05124 -39.43051 -36.12795 -35.73355 -35.45780 -32.78627 -32.47929 -31.80163 -30.93935 -28.20648 -27.68460 -24.88640 -24.61002 -23.86175 -23.63836 -22.92818 -21.84203 -21.21229 -19.95675 -19.02477 -17.95748 -17.45128 -16.99758 -16.74800 -16.64209 -16.38589 -16.11697 -15.85304 -15.54364 -15.16801 -14.88822 -14.74811 -14.56557 -14.54360 -14.28118 -14.11449 -13.84524 -13.72984 -13.17856 -13.04259 -12.95092 -12.91174 -12.80098 -12.54863 -12.52049 -12.28042 -12.15027 -12.05828 -11.93408 -11.83817 -11.70197 -11.65080 -11.10725 -10.99260 -10.88348 -10.56701 -10.06668 -9.78882 -9.40824 -8.97941 -7.95267 -5.22740 0.40223 0.53610 1.45874 1.46879 1.55416 1.66842 2.22779 2.53624 2.87383 2.93081 3.37394 3.69463 3.81389 3.84189 3.89335 3.94094 3.97640 4.06617 4.10484 4.15403 4.20652 4.28818 4.41511 4.48165 4.49568 4.50995 4.59040 4.61579 4.66219 4.74172 4.77788 4.83292 4.93627 4.97352 5.05432 5.07499 5.08687 5.16827 5.20537 5.23553 5.27692 5.33552 5.38256 5.38628 5.47667 5.48706 5.52696 5.68886 5.74338 6.14550 6.27182 6.59087 7.28776 7.34403 8.10205 8.36766 9.27775 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.002112 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.478481 B =13254.746470 C =14698.385556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.122 4.122 6 C -0.085 4.085 7 C -0.096 4.096 8 C 0.509 3.491 9 O -0.582 6.582 10 N -0.720 5.720 11 C 0.135 3.865 12 C -0.076 4.076 13 C -0.140 4.140 14 C 0.188 3.812 15 N -0.734 5.734 16 C -0.247 4.247 17 H 0.068 0.932 18 C -0.071 4.071 19 N -0.964 5.964 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.274 1.274 24 C -0.163 4.163 25 C -0.152 4.152 26 C -0.114 4.114 27 C -0.128 4.128 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.121 0.879 37 H 0.415 0.585 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.377 0.623 45 H 0.252 0.748 46 H 0.109 0.891 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.114 0.886 50 H 0.133 0.867 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.386 -16.045 -15.003 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.140 4.140 6 C -0.085 4.085 7 C -0.135 4.135 8 C 0.297 3.703 9 O -0.462 6.462 10 N -0.373 5.373 11 C 0.011 3.989 12 C -0.114 4.114 13 C -0.141 4.141 14 C 0.061 3.939 15 N -0.377 5.377 16 C -0.378 4.378 17 H 0.086 0.914 18 C -0.264 4.264 19 N -0.614 5.614 20 Si 0.799 3.201 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.199 1.199 24 C -0.200 4.200 25 C -0.189 4.189 26 C -0.132 4.132 27 C -0.145 4.145 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.151 0.849 36 H 0.139 0.861 37 H 0.252 0.748 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.128 0.872 47 H 0.098 0.902 48 H 0.113 0.887 49 H 0.132 0.868 50 H 0.151 0.849 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.879 -16.867 -14.841 27.512 hybrid contribution 0.281 0.981 1.340 1.684 sum -15.599 -15.886 -13.501 26.038 Atomic orbital electron populations 1.21718 0.93887 1.02411 1.01959 1.20585 0.96800 0.91433 1.03375 1.20191 0.98769 0.97202 0.93060 1.21207 1.00417 0.94795 0.98450 1.21208 0.99278 0.95596 0.97880 1.19497 0.99591 0.95651 0.93785 1.20729 0.89652 0.95505 1.07631 1.21137 0.91055 0.83092 0.74998 1.90706 1.71506 1.32909 1.51090 1.45992 1.07272 1.09175 1.74825 1.21112 0.79591 0.97233 1.00967 1.21100 0.92311 0.95052 1.02937 1.21428 0.93730 1.07746 0.91238 1.20225 0.95378 0.89649 0.88616 1.42413 1.70715 1.19269 1.05288 1.19586 1.30398 1.01536 0.86324 0.91364 1.25481 1.02037 0.96681 1.02166 1.69793 1.47213 1.08320 1.36104 0.85204 0.77029 0.77409 0.80499 1.21434 1.21869 1.19932 1.23011 1.01923 0.93493 1.01576 1.23051 1.01705 0.95512 0.98643 1.21220 0.98884 0.95379 0.97741 1.21244 1.00167 0.94815 0.98314 0.93001 0.92633 0.91137 0.90329 0.90776 0.85138 0.86046 0.84917 0.86112 0.74840 0.94426 0.91288 0.89085 0.92197 0.96666 0.97065 0.79024 0.93961 0.87229 0.90199 0.88728 0.86764 0.84889 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.08 -1.15 6.06 29.85 0.18 -0.97 16 3 C -0.09 -1.74 5.13 -19.87 -0.10 -1.84 16 4 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 5 C -0.12 -2.73 9.70 22.27 0.22 -2.52 16 6 C -0.08 -1.83 4.37 -19.86 -0.09 -1.92 16 7 C -0.10 -1.68 5.83 29.10 0.17 -1.51 16 8 C 0.51 13.10 7.82 87.66 0.69 13.78 16 9 O -0.58 -20.60 16.03 -3.05 -0.05 -20.64 16 10 N -0.72 -16.73 5.56 -463.07 -2.57 -19.30 16 11 C 0.13 3.74 5.51 86.38 0.48 4.22 16 12 C -0.08 -2.12 5.24 30.60 0.16 -1.96 16 13 C -0.14 -4.39 1.52 -52.18 -0.08 -4.47 16 14 C 0.19 7.78 6.10 86.38 0.53 8.31 16 15 N -0.73 -37.47 5.30 -343.45 -1.82 -39.29 16 16 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 19 N -0.96 -58.37 13.06 21.65 0.28 -58.08 16 20 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 C -0.16 -4.51 9.90 30.59 0.30 -4.21 16 25 C -0.15 -3.75 9.57 30.59 0.29 -3.45 16 26 C -0.11 -2.28 9.70 22.27 0.22 -2.07 16 27 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.08 0.93 8.09 -2.39 -0.02 0.92 16 32 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 33 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.13 1.46 8.08 -2.39 -0.02 1.44 16 36 H 0.12 1.69 8.09 -2.38 -0.02 1.67 16 37 H 0.42 7.17 8.47 -92.71 -0.79 6.38 16 38 H 0.04 1.30 7.69 -2.39 -0.02 1.28 16 39 H 0.07 1.84 7.80 -2.39 -0.02 1.82 16 40 H 0.09 2.01 7.94 -2.39 -0.02 1.99 16 41 H 0.06 2.01 7.64 -2.39 -0.02 1.99 16 42 H 0.02 0.67 7.69 -2.39 -0.02 0.65 16 43 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 44 H 0.38 20.14 7.46 -92.70 -0.69 19.44 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 46 H 0.11 2.58 8.08 -2.39 -0.02 2.56 16 47 H 0.08 2.47 8.14 -2.38 -0.02 2.46 16 48 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.11 2.30 7.98 -2.39 -0.02 2.28 16 50 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 51 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -73.58 422.33 2.71 -70.87 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: -0.57 Total: 38.77 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 5.41 Total: -20.93 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -4.11 Total: -116.68 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -73.58 2.71 -70.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167351853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.809 kcal (2) G-P(sol) polarization free energy of solvation -73.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds