Wall clock time and date at job start Tue Mar 31 2020 15:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36354 * 119.91917 * 2 1 4 4 C 1.40871 * 119.83620 * 180.02562 * 3 2 1 5 5 C 1.41140 * 120.15447 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00139 * 333.11904 * 5 4 3 7 7 C 1.39860 * 119.99974 * 153.11831 * 5 4 3 8 8 N 1.30909 * 119.99852 * 346.42656 * 7 5 4 9 9 Si 1.86795 * 120.00329 * 166.42729 * 7 5 4 10 10 H 1.48506 * 109.46966 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47504 * 119.99654 * 9 7 5 12 12 H 1.48499 * 109.47527 * 240.00453 * 9 7 5 13 13 C 1.40899 * 119.68956 * 0.02562 * 4 3 2 14 14 C 1.36325 * 119.83536 * 0.27652 * 13 4 3 15 15 C 1.39542 * 119.91661 * 180.02562 * 2 1 3 16 16 N 1.38856 * 119.84320 * 359.95642 * 15 2 1 17 17 C 1.46500 * 119.99855 * 180.02562 * 16 15 2 18 18 H 1.09000 * 109.47458 * 324.99971 * 17 16 15 19 19 C 1.50698 * 109.47327 * 204.99891 * 17 16 15 20 20 O 1.21281 * 120.00054 * 322.97348 * 19 17 16 21 21 N 1.34778 * 120.00112 * 142.96282 * 19 17 16 22 22 C 1.47023 * 125.64854 * 2.76800 * 21 19 17 23 23 C 1.54314 * 107.27539 * 180.96463 * 22 21 19 24 24 C 1.55150 * 102.86330 * 22.52767 * 23 22 21 25 25 C 1.47426 * 125.64887 * 183.07359 * 21 19 17 26 26 C 1.53005 * 109.47170 * 84.99918 * 17 16 15 27 27 C 1.53003 * 109.46811 * 57.95322 * 26 17 16 28 28 C 1.53004 * 109.46847 * 177.94762 * 26 17 16 29 29 H 1.09008 * 109.46925 * 90.00031 * 1 2 3 30 30 H 1.09004 * 109.47468 * 209.99887 * 1 2 3 31 31 H 1.08997 * 109.47345 * 330.00062 * 1 2 3 32 32 H 1.07999 * 120.08152 * 0.04441 * 3 2 1 33 33 H 0.96998 * 119.99625 * 179.97438 * 8 7 5 34 34 H 1.08001 * 120.08169 * 179.97438 * 13 4 3 35 35 H 1.07996 * 119.91738 * 179.72200 * 14 13 4 36 36 H 0.96995 * 120.00449 * 0.02562 * 16 15 2 37 37 H 1.08997 * 109.88457 * 300.51426 * 22 21 19 38 38 H 1.09006 * 109.87831 * 61.67902 * 22 21 19 39 39 H 1.09001 * 110.92308 * 264.10975 * 23 22 21 40 40 H 1.09001 * 110.74048 * 140.86013 * 23 22 21 41 41 H 1.09001 * 111.00669 * 206.22231 * 24 23 22 42 42 H 1.08999 * 111.00267 * 82.37702 * 24 23 22 43 43 H 1.08996 * 110.36834 * 274.67931 * 25 21 19 44 44 H 1.09004 * 110.36498 * 36.89402 * 25 21 19 45 45 H 1.08996 * 109.47041 * 297.95127 * 26 17 16 46 46 H 1.09000 * 109.47011 * 59.99980 * 27 26 17 47 47 H 1.09000 * 109.46914 * 179.97438 * 27 26 17 48 48 H 1.08995 * 109.46947 * 299.99725 * 27 26 17 49 49 H 1.08990 * 109.47644 * 306.56444 * 28 26 17 50 50 H 1.09000 * 109.46653 * 66.57064 * 28 26 17 51 51 H 1.09003 * 109.46999 * 186.56127 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1798 -0.0005 5 6 4.3066 2.3992 0.0000 6 1 3.8576 3.2861 -0.4221 7 6 5.5923 2.4589 0.5472 8 7 6.0342 1.4750 1.2891 9 14 6.6789 3.9425 0.2194 10 1 5.9506 4.9090 -0.6413 11 1 7.0293 4.5938 1.5072 12 1 7.9204 3.5047 -0.4678 13 6 4.2919 -0.0452 -0.0016 14 6 3.5988 -1.2192 -0.0079 15 6 2.2030 -1.2095 -0.0005 16 7 1.5037 -2.4091 -0.0002 17 6 2.2309 -3.6809 -0.0002 18 1 3.1418 -3.5786 -0.5899 19 6 1.3622 -4.7563 -0.6002 20 8 0.1684 -4.7611 -0.3864 21 7 1.9120 -5.7126 -1.3746 22 6 3.3453 -5.8590 -1.6676 23 6 3.4989 -7.0713 -2.6100 24 6 2.0920 -7.1889 -3.2535 25 6 1.1751 -6.7813 -2.0733 26 6 2.5936 -4.0610 1.4369 27 6 1.3182 -4.1547 2.2769 28 6 3.3080 -5.4140 1.4416 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6471 2.1171 0.0007 33 1 6.9261 1.5163 1.6683 34 1 5.3719 -0.0542 -0.0025 35 1 4.1310 -2.1589 -0.0132 36 1 0.5337 -2.4051 0.0001 37 1 3.7179 -4.9583 -2.1553 38 1 3.8960 -6.0378 -0.7440 39 1 3.7425 -7.9729 -2.0479 40 1 4.2555 -6.8760 -3.3699 41 1 1.8910 -8.2127 -3.5689 42 1 1.9852 -6.4965 -4.0885 43 1 1.0142 -7.6291 -1.4075 44 1 0.2217 -6.4048 -2.4441 45 1 3.2515 -3.3012 1.8586 46 1 0.6604 -4.9146 1.8551 47 1 1.5766 -4.4260 3.3005 48 1 0.8093 -3.1909 2.2735 49 1 2.6985 -6.1486 0.9156 50 1 4.2722 -5.3174 0.9425 51 1 3.4625 -5.7397 2.4703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170159164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:33 Heat of formation + Delta-G solvation = -18.753912 kcal Electronic energy + Delta-G solvation = -29423.181555 eV Core-core repulsion = 25707.629648 eV Total energy + Delta-G solvation = -3715.551908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.55073 -38.42759 -37.48319 -35.95418 -34.13550 -32.41917 -31.82430 -31.23840 -29.40863 -28.94005 -26.96508 -26.62198 -25.74552 -24.11162 -23.47974 -21.59802 -20.89742 -20.51568 -19.87859 -18.47310 -17.41194 -16.84057 -16.78800 -15.98394 -15.46147 -15.43740 -14.92863 -14.60871 -13.86451 -13.72493 -13.62217 -13.54512 -13.38215 -13.11352 -12.89785 -12.82779 -12.57217 -12.38724 -12.24326 -11.92473 -11.73105 -11.67427 -11.60847 -11.50685 -11.46778 -11.33628 -11.05480 -11.03346 -10.89747 -10.76468 -10.73680 -10.61133 -10.33283 -9.65839 -9.57656 -9.28554 -9.23332 -8.74260 -8.52682 -7.34584 -6.57527 -6.34803 -4.03984 2.61017 2.84615 2.91780 3.06442 3.16097 3.21587 3.33660 4.07142 4.16610 4.30529 4.34932 4.61012 4.73232 4.78003 4.98595 5.00761 5.06891 5.14325 5.29230 5.39311 5.43067 5.49907 5.55386 5.57941 5.66719 5.71928 5.76647 5.85582 5.92637 5.96692 5.98071 6.04463 6.10509 6.17425 6.21099 6.34275 6.39180 6.48252 6.57330 6.61377 6.85922 6.95284 7.24023 7.37926 7.40468 7.56447 7.73022 7.86993 8.13859 8.16715 8.30555 8.47601 8.71153 8.81238 9.08056 9.16030 10.41306 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.003170 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.986508 B = 8829.533675 C = 9392.439231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.130 4.130 3 C -0.180 4.180 4 C 0.076 3.924 5 C -0.465 4.465 6 H 0.071 0.929 7 C 0.073 3.927 8 N -0.813 5.813 9 Si 0.903 3.097 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.275 1.275 13 C -0.120 4.120 14 C -0.166 4.166 15 C 0.102 3.898 16 N -0.741 5.741 17 C 0.159 3.841 18 H 0.088 0.912 19 C 0.536 3.464 20 O -0.536 6.536 21 N -0.619 5.619 22 C 0.086 3.914 23 C -0.131 4.131 24 C -0.134 4.134 25 C 0.105 3.895 26 C -0.106 4.106 27 C -0.142 4.142 28 C -0.154 4.154 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.274 0.726 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.394 0.606 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.048 0.952 48 H 0.062 0.938 49 H 0.053 0.947 50 H 0.058 0.942 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -17.405 -4.817 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C -0.200 4.200 4 C 0.073 3.927 5 C -0.497 4.497 6 H 0.090 0.910 7 C -0.141 4.141 8 N -0.441 5.441 9 Si 0.729 3.271 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.201 1.201 13 C -0.140 4.140 14 C -0.188 4.188 15 C 0.005 3.995 16 N -0.378 5.378 17 C 0.048 3.952 18 H 0.106 0.894 19 C 0.324 3.676 20 O -0.412 6.412 21 N -0.355 5.355 22 C -0.036 4.036 23 C -0.169 4.169 24 C -0.172 4.172 25 C -0.018 4.018 26 C -0.127 4.127 27 C -0.200 4.200 28 C -0.212 4.212 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.231 0.769 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.092 -17.475 -4.516 18.312 hybrid contribution 0.402 0.629 -0.016 0.747 sum -2.690 -16.846 -4.532 17.651 Atomic orbital electron populations 1.20497 0.93986 1.00619 1.00204 1.18624 0.93462 0.92169 1.09087 1.20478 0.94295 0.94818 1.10397 1.17484 0.90569 0.93262 0.91404 1.19391 0.98981 0.96149 1.35146 0.91039 1.25769 0.98169 0.97129 0.93070 1.69840 1.17799 1.31714 1.24731 0.86346 0.80001 0.81936 0.78834 1.18726 1.20318 1.20058 1.20956 0.99754 0.91015 1.02311 1.20083 0.91448 0.97448 1.09826 1.17113 0.90794 0.83913 1.07701 1.43754 1.07118 1.00493 1.86438 1.20499 0.94692 0.84120 0.95913 0.89431 1.20680 0.88512 0.81346 0.77030 1.90656 1.15879 1.74938 1.59764 1.48544 1.08201 1.29513 1.49239 1.22320 0.82114 0.99170 1.00037 1.22627 0.97730 0.97836 0.98701 1.22792 0.94649 1.02291 0.97484 1.22192 0.96230 0.90158 0.93195 1.21564 0.98256 0.97730 0.95144 1.21768 0.97014 1.02679 0.98500 1.22055 1.00098 0.96909 1.02136 0.93267 0.93499 0.92831 0.89001 0.91513 0.86215 0.89419 0.76936 0.90907 0.90282 0.90495 0.89838 0.89870 0.90493 0.91647 0.90536 0.89131 0.92595 0.93316 0.91912 0.92764 0.92303 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.55 36.01 0.34 -1.43 16 2 C -0.13 -2.89 5.86 -104.81 -0.61 -3.50 16 3 C -0.18 -4.43 9.37 -39.26 -0.37 -4.80 16 4 C 0.08 2.02 5.56 -106.79 -0.59 1.43 16 5 C -0.47 -12.56 9.04 -37.87 -0.34 -12.91 16 6 H 0.07 1.88 7.88 -52.49 -0.41 1.47 16 7 C 0.07 1.87 5.21 -17.34 -0.09 1.78 16 8 N -0.81 -21.36 10.86 55.54 0.60 -20.76 16 9 Si 0.90 19.23 29.58 -169.99 -5.03 14.20 16 10 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 C -0.12 -3.08 8.61 -39.26 -0.34 -3.42 16 14 C -0.17 -3.76 8.77 -39.77 -0.35 -4.11 16 15 C 0.10 2.19 6.63 -83.69 -0.55 1.64 16 16 N -0.74 -13.64 4.25 -53.15 -0.23 -13.86 16 17 C 0.16 2.48 1.61 -69.08 -0.11 2.37 16 18 H 0.09 1.36 5.13 -51.93 -0.27 1.10 16 19 C 0.54 8.11 5.28 -10.99 -0.06 8.05 16 20 O -0.54 -9.59 15.08 5.56 0.08 -9.51 16 21 N -0.62 -7.36 2.81 -170.52 -0.48 -7.84 16 22 C 0.09 0.80 5.67 -3.07 -0.02 0.78 16 23 C -0.13 -0.86 6.95 -24.91 -0.17 -1.03 16 24 C -0.13 -0.92 7.08 -24.59 -0.17 -1.10 16 25 C 0.10 1.02 6.90 -2.53 -0.02 1.01 16 26 C -0.11 -1.55 2.86 -90.61 -0.26 -1.81 16 27 C -0.14 -2.12 8.64 37.16 0.32 -1.80 16 28 C -0.15 -1.78 7.66 37.16 0.28 -1.49 16 29 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.05 0.81 6.53 -51.93 -0.34 0.47 16 31 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.27 6.60 8.30 -40.82 -0.34 6.26 16 34 H 0.12 3.19 6.17 -52.49 -0.32 2.86 16 35 H 0.09 1.77 6.03 -52.49 -0.32 1.45 16 36 H 0.39 7.33 5.93 -40.82 -0.24 7.09 16 37 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 38 H 0.08 0.68 5.02 -51.93 -0.26 0.42 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 45 H 0.09 1.50 7.67 -51.93 -0.40 1.10 16 46 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 1.04 7.55 -51.93 -0.39 0.65 16 49 H 0.05 0.62 5.87 -51.93 -0.31 0.31 16 50 H 0.06 0.60 6.98 -51.93 -0.36 0.24 16 51 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -29.62 387.66 -10.45 -40.06 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -8.13 Total: 12.20 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -3.11 Total: -20.34 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.10 Total: -42.46 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.62 -10.45 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170159164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.310 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds