Wall clock time and date at job start Tue Mar 31 2020 15:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36354 * 119.91917 * 2 1 4 4 C 1.40871 * 119.83620 * 180.02562 * 3 2 1 5 5 C 1.41140 * 120.15447 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00139 * 333.11904 * 5 4 3 7 7 C 1.39860 * 119.99974 * 153.11831 * 5 4 3 8 8 N 1.30909 * 119.99852 * 346.42656 * 7 5 4 9 9 Si 1.86795 * 120.00329 * 166.42729 * 7 5 4 10 10 H 1.48506 * 109.46966 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47504 * 119.99654 * 9 7 5 12 12 H 1.48499 * 109.47527 * 240.00453 * 9 7 5 13 13 C 1.40899 * 119.68956 * 0.02562 * 4 3 2 14 14 C 1.36325 * 119.83536 * 0.27652 * 13 4 3 15 15 C 1.39542 * 119.91661 * 180.02562 * 2 1 3 16 16 N 1.38856 * 119.84320 * 359.95642 * 15 2 1 17 17 C 1.46500 * 119.99855 * 180.02562 * 16 15 2 18 18 H 1.09000 * 109.47458 * 324.99971 * 17 16 15 19 19 C 1.50698 * 109.47327 * 204.99891 * 17 16 15 20 20 O 1.21281 * 120.00054 * 322.97348 * 19 17 16 21 21 N 1.34778 * 120.00112 * 142.96282 * 19 17 16 22 22 C 1.47023 * 125.64854 * 2.76800 * 21 19 17 23 23 C 1.54314 * 107.27539 * 180.96463 * 22 21 19 24 24 C 1.55150 * 102.86330 * 22.52767 * 23 22 21 25 25 C 1.47426 * 125.64887 * 183.07359 * 21 19 17 26 26 C 1.53005 * 109.47170 * 84.99918 * 17 16 15 27 27 C 1.53003 * 109.46811 * 57.95322 * 26 17 16 28 28 C 1.53004 * 109.46847 * 177.94762 * 26 17 16 29 29 H 1.09008 * 109.46925 * 90.00031 * 1 2 3 30 30 H 1.09004 * 109.47468 * 209.99887 * 1 2 3 31 31 H 1.08997 * 109.47345 * 330.00062 * 1 2 3 32 32 H 1.07999 * 120.08152 * 0.04441 * 3 2 1 33 33 H 0.96998 * 119.99625 * 179.97438 * 8 7 5 34 34 H 1.08001 * 120.08169 * 179.97438 * 13 4 3 35 35 H 1.07996 * 119.91738 * 179.72200 * 14 13 4 36 36 H 0.96995 * 120.00449 * 0.02562 * 16 15 2 37 37 H 1.08997 * 109.88457 * 300.51426 * 22 21 19 38 38 H 1.09006 * 109.87831 * 61.67902 * 22 21 19 39 39 H 1.09001 * 110.92308 * 264.10975 * 23 22 21 40 40 H 1.09001 * 110.74048 * 140.86013 * 23 22 21 41 41 H 1.09001 * 111.00669 * 206.22231 * 24 23 22 42 42 H 1.08999 * 111.00267 * 82.37702 * 24 23 22 43 43 H 1.08996 * 110.36834 * 274.67931 * 25 21 19 44 44 H 1.09004 * 110.36498 * 36.89402 * 25 21 19 45 45 H 1.08996 * 109.47041 * 297.95127 * 26 17 16 46 46 H 1.09000 * 109.47011 * 59.99980 * 27 26 17 47 47 H 1.09000 * 109.46914 * 179.97438 * 27 26 17 48 48 H 1.08995 * 109.46947 * 299.99725 * 27 26 17 49 49 H 1.08990 * 109.47644 * 306.56444 * 28 26 17 50 50 H 1.09000 * 109.46653 * 66.57064 * 28 26 17 51 51 H 1.09003 * 109.46999 * 186.56127 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1798 -0.0005 5 6 4.3066 2.3992 0.0000 6 1 3.8576 3.2861 -0.4221 7 6 5.5923 2.4589 0.5472 8 7 6.0342 1.4750 1.2891 9 14 6.6789 3.9425 0.2194 10 1 5.9506 4.9090 -0.6413 11 1 7.0293 4.5938 1.5072 12 1 7.9204 3.5047 -0.4678 13 6 4.2919 -0.0452 -0.0016 14 6 3.5988 -1.2192 -0.0079 15 6 2.2030 -1.2095 -0.0005 16 7 1.5037 -2.4091 -0.0002 17 6 2.2309 -3.6809 -0.0002 18 1 3.1418 -3.5786 -0.5899 19 6 1.3622 -4.7563 -0.6002 20 8 0.1684 -4.7611 -0.3864 21 7 1.9120 -5.7126 -1.3746 22 6 3.3453 -5.8590 -1.6676 23 6 3.4989 -7.0713 -2.6100 24 6 2.0920 -7.1889 -3.2535 25 6 1.1751 -6.7813 -2.0733 26 6 2.5936 -4.0610 1.4369 27 6 1.3182 -4.1547 2.2769 28 6 3.3080 -5.4140 1.4416 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6471 2.1171 0.0007 33 1 6.9261 1.5163 1.6683 34 1 5.3719 -0.0542 -0.0025 35 1 4.1310 -2.1589 -0.0132 36 1 0.5337 -2.4051 0.0001 37 1 3.7179 -4.9583 -2.1553 38 1 3.8960 -6.0378 -0.7440 39 1 3.7425 -7.9729 -2.0479 40 1 4.2555 -6.8760 -3.3699 41 1 1.8910 -8.2127 -3.5689 42 1 1.9852 -6.4965 -4.0885 43 1 1.0142 -7.6291 -1.4075 44 1 0.2217 -6.4048 -2.4441 45 1 3.2515 -3.3012 1.8586 46 1 0.6604 -4.9146 1.8551 47 1 1.5766 -4.4260 3.3005 48 1 0.8093 -3.1909 2.2735 49 1 2.6985 -6.1486 0.9156 50 1 4.2722 -5.3174 0.9425 51 1 3.4625 -5.7397 2.4703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170159164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:31 Heat of formation + Delta-G solvation = -33.524277 kcal Electronic energy + Delta-G solvation = -29423.822046 eV Core-core repulsion = 25707.629648 eV Total energy + Delta-G solvation = -3716.192399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.68636 -39.97433 -38.58905 -37.31769 -35.84745 -34.05101 -33.00400 -32.67365 -30.74722 -30.10960 -28.10237 -27.95400 -27.49685 -25.75335 -24.55562 -22.42539 -22.21726 -22.00358 -21.48340 -19.57508 -18.83959 -18.60829 -17.78091 -17.38880 -16.86683 -16.73793 -16.42406 -15.94522 -15.27510 -15.03008 -14.75290 -14.61122 -14.51527 -14.30637 -14.27354 -14.18713 -13.79277 -13.71216 -13.47329 -13.37112 -13.26276 -13.16248 -12.87492 -12.81911 -12.75015 -12.51582 -12.30021 -12.25385 -12.16426 -12.09615 -11.97904 -11.76483 -11.55138 -11.47458 -11.14921 -11.06800 -10.81349 -10.29201 -9.69327 -9.21392 -8.47955 -8.13682 -6.01278 1.11108 1.17442 1.41439 1.42958 1.55281 1.58363 1.85526 2.29353 2.83709 2.88972 3.36046 3.67229 3.77140 3.83569 3.86864 3.92896 4.07093 4.14905 4.26958 4.33054 4.39947 4.43998 4.48750 4.63365 4.65267 4.69398 4.72633 4.83851 4.88424 4.90421 4.93024 4.94993 5.00222 5.00638 5.07646 5.10269 5.12369 5.14580 5.25778 5.31978 5.35736 5.35972 5.38939 5.53065 5.70525 5.87532 5.99451 6.21865 6.35432 6.43218 6.67093 6.85567 7.00490 7.08557 7.11506 7.27106 8.52664 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.003170 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.986508 B = 8829.533675 C = 9392.439231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.141 4.141 3 C -0.192 4.192 4 C 0.039 3.961 5 C -0.503 4.503 6 H 0.064 0.936 7 C 0.032 3.968 8 N -0.843 5.843 9 Si 0.976 3.024 10 H -0.263 1.263 11 H -0.270 1.270 12 H -0.265 1.265 13 C -0.138 4.138 14 C -0.167 4.167 15 C 0.117 3.883 16 N -0.736 5.736 17 C 0.155 3.845 18 H 0.091 0.909 19 C 0.535 3.465 20 O -0.570 6.570 21 N -0.615 5.615 22 C 0.075 3.925 23 C -0.122 4.122 24 C -0.125 4.125 25 C 0.097 3.903 26 C -0.104 4.104 27 C -0.136 4.136 28 C -0.147 4.147 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.281 0.719 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.395 0.605 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.040 0.960 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.199 -19.647 -5.454 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C -0.212 4.212 4 C 0.037 3.963 5 C -0.535 4.535 6 H 0.082 0.918 7 C -0.180 4.180 8 N -0.472 5.472 9 Si 0.798 3.202 10 H -0.187 1.187 11 H -0.195 1.195 12 H -0.190 1.190 13 C -0.159 4.159 14 C -0.189 4.189 15 C 0.018 3.982 16 N -0.372 5.372 17 C 0.046 3.954 18 H 0.108 0.892 19 C 0.323 3.677 20 O -0.450 6.450 21 N -0.349 5.349 22 C -0.047 4.047 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.025 4.025 26 C -0.125 4.125 27 C -0.193 4.193 28 C -0.204 4.204 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.231 0.769 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.534 -19.779 -5.176 20.601 hybrid contribution 0.118 1.160 0.166 1.178 sum -2.417 -18.618 -5.010 19.431 Atomic orbital electron populations 1.20483 0.91142 1.01661 1.01387 1.19022 0.95689 0.91664 1.08157 1.20633 0.93908 0.95900 1.10797 1.17801 0.91697 0.93810 0.93020 1.19589 1.00617 0.96255 1.37034 0.91797 1.26550 0.98929 1.00180 0.92300 1.69902 1.18445 1.33520 1.25324 0.85252 0.78012 0.78123 0.78798 1.18727 1.19549 1.18997 1.20875 0.99120 0.91856 1.04006 1.20226 0.92037 0.97442 1.09236 1.17204 0.90660 0.85033 1.05273 1.43772 1.07194 1.00632 1.85579 1.20660 0.94593 0.83243 0.96945 0.89173 1.20412 0.87847 0.81876 0.77567 1.90640 1.17023 1.75954 1.61359 1.48604 1.09779 1.28787 1.47724 1.22595 0.80396 1.00402 1.01288 1.22651 0.97756 0.97075 0.98494 1.22787 0.94008 1.03544 0.95964 1.22416 0.96107 0.89599 0.94382 1.21508 0.97965 0.99057 0.93943 1.21701 0.96875 1.01274 0.99493 1.22000 1.00388 0.94760 1.03278 0.91891 0.92388 0.91866 0.88911 0.90874 0.87866 0.87207 0.76860 0.91582 0.89326 0.88757 0.88331 0.87335 0.91006 0.90574 0.92206 0.91177 0.93043 0.91803 0.94062 0.92401 0.90778 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.24 9.55 71.24 0.68 -2.56 16 2 C -0.14 -6.34 5.86 -19.99 -0.12 -6.46 16 3 C -0.19 -9.77 9.37 22.47 0.21 -9.56 16 4 C 0.04 2.20 5.56 -21.27 -0.12 2.08 16 5 C -0.50 -28.37 9.04 23.38 0.21 -28.16 16 6 H 0.06 3.53 7.88 -2.91 -0.02 3.51 16 7 C 0.03 1.66 5.21 85.22 0.44 2.11 16 8 N -0.84 -45.58 10.86 21.81 0.24 -45.34 16 9 Si 0.98 40.20 29.58 68.60 2.03 42.23 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 12 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 13 C -0.14 -7.35 8.61 22.48 0.19 -7.16 16 14 C -0.17 -7.66 8.77 22.15 0.19 -7.47 16 15 C 0.12 5.06 6.63 38.67 0.26 5.31 16 16 N -0.74 -26.80 4.25 -322.08 -1.37 -28.16 16 17 C 0.16 4.74 1.61 44.25 0.07 4.81 16 18 H 0.09 2.70 5.13 -2.39 -0.01 2.69 16 19 C 0.53 15.66 5.28 87.66 0.46 16.13 16 20 O -0.57 -20.16 15.08 -3.03 -0.05 -20.20 16 21 N -0.62 -13.55 2.81 -811.80 -2.28 -15.83 16 22 C 0.08 1.19 5.67 86.73 0.49 1.69 16 23 C -0.12 -1.15 6.95 31.78 0.22 -0.93 16 24 C -0.13 -1.34 7.08 31.98 0.23 -1.11 16 25 C 0.10 1.70 6.90 86.85 0.60 2.30 16 26 C -0.10 -2.93 2.86 -10.79 -0.03 -2.96 16 27 C -0.14 -3.96 8.64 71.98 0.62 -3.34 16 28 C -0.15 -3.03 7.66 71.98 0.55 -2.48 16 29 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.06 1.95 6.53 -2.38 -0.02 1.93 16 31 H 0.06 2.14 8.08 -2.39 -0.02 2.13 16 32 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.28 13.79 8.30 -92.71 -0.77 13.02 16 34 H 0.10 5.74 6.17 -2.91 -0.02 5.72 16 35 H 0.11 4.41 6.03 -2.91 -0.02 4.39 16 36 H 0.39 14.49 5.93 -92.71 -0.55 13.94 16 37 H 0.07 1.16 7.69 -2.39 -0.02 1.14 16 38 H 0.09 1.25 5.02 -2.38 -0.01 1.24 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.26 8.06 -2.38 -0.02 1.24 16 45 H 0.07 2.28 7.67 -2.39 -0.02 2.26 16 46 H 0.05 1.55 6.43 -2.39 -0.02 1.53 16 47 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.04 1.35 7.55 -2.39 -0.02 1.33 16 49 H 0.06 1.17 5.87 -2.39 -0.01 1.15 16 50 H 0.07 1.31 6.98 -2.39 -0.02 1.29 16 51 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -66.91 387.66 4.13 -62.78 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: 0.39 Total: 42.29 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 5.17 Total: -37.76 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -3.41 Total: -89.33 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.05 Total: -20.20 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -66.91 4.13 -62.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170159164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.252 kcal (2) G-P(sol) polarization free energy of solvation -66.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds