Wall clock time and date at job start Tue Mar 31 2020 15:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38096 * 119.58266 * 2 1 4 4 C 1.38787 * 119.28990 * 180.25553 * 3 2 1 5 5 C 1.38423 * 118.48278 * 359.47954 * 4 3 2 6 6 C 1.38876 * 119.11476 * 0.25141 * 5 4 3 7 7 O 1.35677 * 119.68691 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00070 * 180.02562 * 7 6 5 9 9 H 1.09002 * 110.27548 * 27.90811 * 8 7 6 10 10 C 1.54597 * 110.30793 * 265.71616 * 8 7 6 11 11 C 1.54939 * 102.91983 * 219.12998 * 10 8 7 12 12 N 1.48524 * 103.23007 * 37.41145 * 11 10 8 13 13 C 1.46896 * 111.00207 * 200.27999 * 12 11 10 14 14 C 1.53001 * 109.47450 * 300.89489 * 13 12 11 15 15 C 1.52997 * 109.47544 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.46970 * 59.99965 * 15 14 13 17 17 C 1.50702 * 109.47041 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99897 * 119.99419 * 17 16 15 19 19 C 1.37879 * 120.00147 * 299.99990 * 17 16 15 20 20 N 1.31517 * 119.99695 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00317 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46863 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47395 * 119.99639 * 21 19 17 24 24 H 1.48500 * 109.47318 * 239.99995 * 21 19 17 25 25 C 1.53002 * 109.47148 * 299.99817 * 16 15 14 26 26 C 1.52997 * 109.47035 * 60.00224 * 25 16 15 27 27 C 1.47906 * 105.82174 * 320.79487 * 12 11 10 28 28 N 1.31935 * 119.58915 * 179.72934 * 2 1 3 29 29 H 1.09000 * 109.46936 * 270.27151 * 1 2 3 30 30 H 1.08997 * 109.47693 * 30.27148 * 1 2 3 31 31 H 1.08996 * 109.47126 * 150.28037 * 1 2 3 32 32 H 1.08000 * 120.35381 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.75748 * 179.75535 * 4 3 2 34 34 H 1.07999 * 120.44631 * 180.22971 * 5 4 3 35 35 H 1.08996 * 110.72134 * 337.48553 * 10 8 7 36 36 H 1.08998 * 110.72234 * 100.76986 * 10 8 7 37 37 H 1.09011 * 110.66479 * 278.97604 * 11 10 8 38 38 H 1.09001 * 110.81023 * 155.92125 * 11 10 8 39 39 H 1.09004 * 109.47316 * 60.89151 * 13 12 11 40 40 H 1.09004 * 109.46585 * 300.00110 * 14 13 12 41 41 H 1.08995 * 109.47089 * 59.99272 * 14 13 12 42 42 H 1.08999 * 109.46991 * 300.00037 * 15 14 13 43 43 H 1.08998 * 109.47421 * 179.97438 * 15 14 13 44 44 H 1.08999 * 109.47205 * 60.00203 * 16 15 14 45 45 H 0.97000 * 120.00039 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.47383 * 300.00277 * 25 16 15 47 47 H 1.08998 * 109.47499 * 180.02562 * 25 16 15 48 48 H 1.08998 * 109.47421 * 180.02562 * 26 25 16 49 49 H 1.08999 * 109.46991 * 59.99814 * 26 25 16 50 50 H 1.08998 * 109.91793 * 265.97765 * 27 12 11 51 51 H 1.08998 * 109.91899 * 144.68149 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5765 1.1939 -0.0054 5 6 4.2305 -0.0262 0.0004 6 6 3.4803 -1.1949 0.0061 7 8 4.1093 -2.3970 0.0113 8 6 3.2819 -3.5621 0.0164 9 1 2.3265 -3.3490 -0.4631 10 6 3.0596 -4.0560 1.4644 11 6 3.1238 -5.5972 1.3185 12 7 4.1849 -5.7982 0.2989 13 6 4.0725 -7.1239 -0.3236 14 6 4.1904 -8.2046 0.7530 15 6 4.0727 -9.5855 0.1047 16 6 5.1930 -9.7640 -0.9219 17 6 5.0767 -11.1239 -1.5609 18 1 4.9333 -11.2086 -2.6280 19 6 5.1533 -12.2599 -0.7833 20 7 5.3274 -12.1567 0.5162 21 14 5.0099 -13.9455 -1.5754 22 1 4.8194 -13.7896 -3.0399 23 1 6.2496 -14.7211 -1.3168 24 1 3.8461 -14.6658 -0.9992 25 6 5.0752 -8.6834 -1.9986 26 6 5.1929 -7.3026 -1.3503 27 6 3.9922 -4.7252 -0.7007 28 7 2.1584 -1.1473 0.0054 29 1 -0.3633 0.0049 1.0277 30 1 -0.3634 0.8875 -0.5180 31 1 -0.3633 -0.8925 -0.5095 32 1 1.6476 2.1356 -0.0004 33 1 4.1335 2.1191 -0.0095 34 1 5.3096 -0.0686 0.0002 35 1 3.8529 -3.6973 2.1203 36 1 2.0824 -3.7437 1.8327 37 1 2.1706 -5.9901 0.9644 38 1 3.4039 -6.0642 2.2627 39 1 3.1068 -7.2109 -0.8215 40 1 5.1562 -8.1177 1.2509 41 1 3.3920 -8.0776 1.4842 42 1 3.1067 -9.6721 -0.3928 43 1 4.1570 -10.3554 0.8717 44 1 6.1590 -9.6774 -0.4243 45 1 5.3817 -12.9558 1.0633 46 1 4.1093 -8.7700 -2.4962 47 1 5.8730 -8.8109 -2.7302 48 1 5.1085 -6.5327 -2.1172 49 1 6.1588 -7.2160 -0.8527 50 1 3.3735 -5.0888 -1.5211 51 1 4.9586 -4.3929 -1.0798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:36 Heat of formation + Delta-G solvation = -14.055467 kcal Electronic energy + Delta-G solvation = -28211.602397 eV Core-core repulsion = 24496.254229 eV Total energy + Delta-G solvation = -3715.348168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97825 -39.52994 -38.03735 -36.22919 -33.34723 -32.87992 -31.91995 -30.82243 -30.06020 -28.57399 -28.00474 -27.34864 -24.41125 -23.60187 -22.67609 -21.97357 -21.69879 -20.39387 -19.99473 -18.78653 -18.39968 -16.94260 -16.36221 -16.26937 -15.93196 -15.61600 -15.13018 -14.62197 -14.34541 -14.21621 -14.06576 -13.85426 -13.40948 -13.21534 -13.08954 -12.78304 -12.67066 -12.55427 -12.45673 -12.30415 -12.20490 -11.93869 -11.74257 -11.20219 -11.03331 -10.98729 -10.96419 -10.68977 -10.61902 -10.48228 -10.28478 -10.13580 -10.10787 -9.82957 -9.72827 -9.30528 -8.82458 -8.65655 -8.58828 -8.25985 -8.16989 -5.93011 -3.98832 0.83982 0.99815 2.82836 3.31961 3.40103 3.44027 3.45127 3.84568 4.13780 4.40626 4.48038 4.54659 4.63944 4.71067 4.81804 4.89110 5.10043 5.17560 5.22035 5.26136 5.28872 5.36102 5.41939 5.49032 5.51048 5.61469 5.66087 5.68493 5.78757 5.85925 5.89024 5.95080 5.98526 6.05634 6.18561 6.24429 6.37712 6.42278 6.48838 6.58869 6.72062 6.83190 6.99588 7.08119 7.15358 7.19931 7.29763 7.42375 7.59744 7.62107 7.80947 8.09000 8.21847 8.53340 9.05707 9.65463 11.12500 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.033594 B = 0.002020 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.279383 B =13857.115954 C =14015.162885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.168 3.832 3 C -0.218 4.218 4 C -0.038 4.038 5 C -0.201 4.201 6 C 0.333 3.667 7 O -0.291 6.291 8 C 0.082 3.918 9 H 0.094 0.906 10 C -0.136 4.136 11 C 0.039 3.961 12 N -0.509 5.509 13 C 0.082 3.918 14 C -0.107 4.107 15 C -0.108 4.108 16 C 0.048 3.952 17 C -0.511 4.511 18 H 0.053 0.947 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.107 4.107 26 C -0.105 4.105 27 C 0.039 3.961 28 N -0.541 5.541 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.036 0.964 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.030 0.970 43 H 0.093 0.907 44 H 0.026 0.974 45 H 0.258 0.742 46 H 0.044 0.956 47 H 0.048 0.952 48 H 0.042 0.958 49 H 0.064 0.936 50 H 0.056 0.944 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.808 27.331 1.063 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.031 3.969 3 C -0.239 4.239 4 C -0.063 4.063 5 C -0.222 4.222 6 C 0.154 3.846 7 O -0.198 6.198 8 C 0.025 3.975 9 H 0.112 0.888 10 C -0.174 4.174 11 C -0.089 4.089 12 N -0.234 5.234 13 C -0.026 4.026 14 C -0.145 4.145 15 C -0.146 4.146 16 C 0.030 3.970 17 C -0.549 4.549 18 H 0.072 0.928 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.146 4.146 26 C -0.143 4.143 27 C -0.089 4.089 28 N -0.266 5.266 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.111 0.889 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.074 0.926 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.440 26.365 1.442 27.432 hybrid contribution -0.571 -0.321 -0.737 0.986 sum -8.011 26.043 0.705 27.257 Atomic orbital electron populations 1.20759 0.88668 1.03634 1.03289 1.20951 0.96628 0.87305 0.91993 1.21764 0.94905 0.99077 1.08128 1.21387 0.94261 0.97490 0.93174 1.21089 1.01599 0.90290 1.09186 1.19854 0.87658 0.86570 0.90551 1.86377 1.35091 1.11655 1.86654 1.23310 0.94266 0.82596 0.97319 0.88760 1.22929 1.02433 0.95903 0.96160 1.23148 0.93771 0.94401 0.97603 1.64889 1.44653 1.02527 1.11324 1.21947 0.97594 0.87324 0.95707 1.21677 1.00887 0.95671 0.96240 1.21609 0.98509 0.93672 1.00823 1.18660 0.94937 0.91919 0.91498 1.21289 1.48972 0.90888 0.93766 0.92827 1.24975 0.95320 0.98950 0.94866 1.69889 1.50407 1.28464 1.04176 0.86605 0.77544 0.84676 0.79565 1.19894 1.21116 1.21155 1.21622 0.99993 0.93775 0.99171 1.21582 0.98384 0.97865 0.96501 1.22913 1.01177 0.90414 0.94385 1.67095 1.08501 1.30929 1.20106 0.90156 0.90465 0.90376 0.84755 0.84229 0.84097 0.89974 0.90681 0.93606 0.89410 0.94600 0.92010 0.94072 0.95101 0.88859 0.95583 0.93193 0.93706 0.93316 0.93913 0.91736 0.92558 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.17 36.00 0.37 -0.29 16 2 C 0.17 1.53 6.78 -82.60 -0.56 0.97 16 3 C -0.22 -1.62 9.74 -39.43 -0.38 -2.00 16 4 C -0.04 -0.28 10.17 -39.31 -0.40 -0.68 16 5 C -0.20 -1.92 10.04 -39.28 -0.39 -2.32 16 6 C 0.33 3.97 7.48 -17.12 -0.13 3.85 16 7 O -0.29 -3.84 9.71 -18.73 -0.18 -4.02 16 8 C 0.08 1.04 3.27 -25.37 -0.08 0.96 16 9 H 0.09 1.20 6.96 -51.93 -0.36 0.83 16 10 C -0.14 -1.66 6.80 -24.87 -0.17 -1.83 16 11 C 0.04 0.52 5.38 -1.90 -0.01 0.51 16 12 N -0.51 -7.90 5.11 -222.50 -1.14 -9.04 16 13 C 0.08 1.44 1.63 -67.71 -0.11 1.33 16 14 C -0.11 -2.10 5.04 -26.73 -0.13 -2.23 16 15 C -0.11 -2.53 4.98 -26.73 -0.13 -2.67 16 16 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 17 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 20 N -0.89 -25.56 11.32 55.43 0.63 -24.94 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C -0.11 -2.27 5.14 -26.73 -0.14 -2.41 16 26 C -0.11 -1.92 5.17 -26.73 -0.14 -2.06 16 27 C 0.04 0.54 5.31 -2.75 -0.01 0.53 16 28 N -0.54 -6.26 8.55 -9.55 -0.08 -6.34 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.31 8.08 -51.93 -0.42 -0.10 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.62 8.01 -51.92 -0.42 0.20 16 38 H 0.09 1.20 7.65 -51.93 -0.40 0.80 16 39 H 0.04 0.64 7.98 -51.93 -0.41 0.23 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.04 0.74 6.91 -51.93 -0.36 0.38 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 46 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.04 0.70 7.27 -51.93 -0.38 0.32 16 49 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 50 H 0.06 0.76 7.63 -51.93 -0.40 0.37 16 51 H 0.09 1.27 7.96 -51.93 -0.41 0.86 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -29.96 394.71 -11.76 -41.72 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.90 Total: 0.40 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -3.01 Total: -20.19 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: -0.59 Total: -40.32 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.18 Total: -4.02 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.96 -11.76 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.667 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds