Wall clock time and date at job start Tue Mar 31 2020 15:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38096 * 119.58266 * 2 1 4 4 C 1.38787 * 119.28990 * 180.25553 * 3 2 1 5 5 C 1.38423 * 118.48278 * 359.47954 * 4 3 2 6 6 C 1.38876 * 119.11476 * 0.25141 * 5 4 3 7 7 O 1.35677 * 119.68691 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00070 * 180.02562 * 7 6 5 9 9 H 1.09002 * 110.27548 * 27.90811 * 8 7 6 10 10 C 1.54597 * 110.30793 * 265.71616 * 8 7 6 11 11 C 1.54939 * 102.91983 * 219.12998 * 10 8 7 12 12 N 1.48524 * 103.23007 * 37.41145 * 11 10 8 13 13 C 1.46896 * 111.00207 * 200.27999 * 12 11 10 14 14 C 1.53001 * 109.47450 * 300.89489 * 13 12 11 15 15 C 1.52997 * 109.47544 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.46970 * 59.99965 * 15 14 13 17 17 C 1.50702 * 109.47041 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99897 * 119.99419 * 17 16 15 19 19 C 1.37879 * 120.00147 * 299.99990 * 17 16 15 20 20 N 1.31517 * 119.99695 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00317 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46863 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47395 * 119.99639 * 21 19 17 24 24 H 1.48500 * 109.47318 * 239.99995 * 21 19 17 25 25 C 1.53002 * 109.47148 * 299.99817 * 16 15 14 26 26 C 1.52997 * 109.47035 * 60.00224 * 25 16 15 27 27 C 1.47906 * 105.82174 * 320.79487 * 12 11 10 28 28 N 1.31935 * 119.58915 * 179.72934 * 2 1 3 29 29 H 1.09000 * 109.46936 * 270.27151 * 1 2 3 30 30 H 1.08997 * 109.47693 * 30.27148 * 1 2 3 31 31 H 1.08996 * 109.47126 * 150.28037 * 1 2 3 32 32 H 1.08000 * 120.35381 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.75748 * 179.75535 * 4 3 2 34 34 H 1.07999 * 120.44631 * 180.22971 * 5 4 3 35 35 H 1.08996 * 110.72134 * 337.48553 * 10 8 7 36 36 H 1.08998 * 110.72234 * 100.76986 * 10 8 7 37 37 H 1.09011 * 110.66479 * 278.97604 * 11 10 8 38 38 H 1.09001 * 110.81023 * 155.92125 * 11 10 8 39 39 H 1.09004 * 109.47316 * 60.89151 * 13 12 11 40 40 H 1.09004 * 109.46585 * 300.00110 * 14 13 12 41 41 H 1.08995 * 109.47089 * 59.99272 * 14 13 12 42 42 H 1.08999 * 109.46991 * 300.00037 * 15 14 13 43 43 H 1.08998 * 109.47421 * 179.97438 * 15 14 13 44 44 H 1.08999 * 109.47205 * 60.00203 * 16 15 14 45 45 H 0.97000 * 120.00039 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.47383 * 300.00277 * 25 16 15 47 47 H 1.08998 * 109.47499 * 180.02562 * 25 16 15 48 48 H 1.08998 * 109.47421 * 180.02562 * 26 25 16 49 49 H 1.08999 * 109.46991 * 59.99814 * 26 25 16 50 50 H 1.08998 * 109.91793 * 265.97765 * 27 12 11 51 51 H 1.08998 * 109.91899 * 144.68149 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5765 1.1939 -0.0054 5 6 4.2305 -0.0262 0.0004 6 6 3.4803 -1.1949 0.0061 7 8 4.1093 -2.3970 0.0113 8 6 3.2819 -3.5621 0.0164 9 1 2.3265 -3.3490 -0.4631 10 6 3.0596 -4.0560 1.4644 11 6 3.1238 -5.5972 1.3185 12 7 4.1849 -5.7982 0.2989 13 6 4.0725 -7.1239 -0.3236 14 6 4.1904 -8.2046 0.7530 15 6 4.0727 -9.5855 0.1047 16 6 5.1930 -9.7640 -0.9219 17 6 5.0767 -11.1239 -1.5609 18 1 4.9333 -11.2086 -2.6280 19 6 5.1533 -12.2599 -0.7833 20 7 5.3274 -12.1567 0.5162 21 14 5.0099 -13.9455 -1.5754 22 1 4.8194 -13.7896 -3.0399 23 1 6.2496 -14.7211 -1.3168 24 1 3.8461 -14.6658 -0.9992 25 6 5.0752 -8.6834 -1.9986 26 6 5.1929 -7.3026 -1.3503 27 6 3.9922 -4.7252 -0.7007 28 7 2.1584 -1.1473 0.0054 29 1 -0.3633 0.0049 1.0277 30 1 -0.3634 0.8875 -0.5180 31 1 -0.3633 -0.8925 -0.5095 32 1 1.6476 2.1356 -0.0004 33 1 4.1335 2.1191 -0.0095 34 1 5.3096 -0.0686 0.0002 35 1 3.8529 -3.6973 2.1203 36 1 2.0824 -3.7437 1.8327 37 1 2.1706 -5.9901 0.9644 38 1 3.4039 -6.0642 2.2627 39 1 3.1068 -7.2109 -0.8215 40 1 5.1562 -8.1177 1.2509 41 1 3.3920 -8.0776 1.4842 42 1 3.1067 -9.6721 -0.3928 43 1 4.1570 -10.3554 0.8717 44 1 6.1590 -9.6774 -0.4243 45 1 5.3817 -12.9558 1.0633 46 1 4.1093 -8.7700 -2.4962 47 1 5.8730 -8.8109 -2.7302 48 1 5.1085 -6.5327 -2.1172 49 1 6.1588 -7.2160 -0.8527 50 1 3.3735 -5.0888 -1.5211 51 1 4.9586 -4.3929 -1.0798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:35 Heat of formation + Delta-G solvation = -31.459014 kcal Electronic energy + Delta-G solvation = -28212.357072 eV Core-core repulsion = 24496.254229 eV Total energy + Delta-G solvation = -3716.102842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74911 -40.66256 -39.18701 -37.61484 -34.80552 -33.89804 -32.78214 -32.19156 -31.65172 -29.70024 -29.43206 -28.15980 -26.26020 -24.40609 -23.47620 -23.40645 -22.95794 -21.61210 -21.38350 -20.47472 -19.30861 -18.39751 -17.73615 -17.11893 -16.85393 -16.69909 -16.45032 -16.13559 -15.47174 -15.22646 -14.97747 -14.86728 -14.74815 -14.64224 -14.35965 -13.96416 -13.87866 -13.76393 -13.57961 -13.21544 -13.09333 -12.99126 -12.85807 -12.81012 -12.73888 -12.53044 -12.44956 -12.16661 -11.99746 -11.89950 -11.81099 -11.63761 -11.58650 -11.19925 -10.79922 -10.72475 -10.53371 -10.47371 -10.35665 -9.41321 -9.34451 -8.06188 -6.20159 0.18966 0.35779 1.39482 1.41341 1.52607 2.00139 2.43948 2.78327 2.90239 3.19846 3.20881 3.49673 3.58746 3.91095 3.94452 4.00603 4.08487 4.10417 4.22635 4.25184 4.29669 4.41349 4.47819 4.52952 4.60180 4.66689 4.70197 4.72070 4.77911 4.80401 4.80725 4.81552 4.86795 4.89253 4.96623 4.98164 5.03925 5.13869 5.16627 5.20011 5.28630 5.32819 5.40255 5.48106 5.62411 5.63138 5.70354 5.89365 6.04800 6.07850 6.22979 6.32406 6.42994 6.92685 6.92812 7.47586 8.97862 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.033594 B = 0.002020 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.279383 B =13857.115954 C =14015.162885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.147 3.853 3 C -0.211 4.211 4 C -0.034 4.034 5 C -0.213 4.213 6 C 0.301 3.699 7 O -0.308 6.308 8 C 0.090 3.910 9 H 0.094 0.906 10 C -0.125 4.125 11 C 0.038 3.962 12 N -0.519 5.519 13 C 0.093 3.907 14 C -0.096 4.096 15 C -0.099 4.099 16 C 0.045 3.955 17 C -0.533 4.533 18 H 0.050 0.950 19 C 0.010 3.990 20 N -0.916 5.916 21 Si 0.952 3.048 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.280 1.280 25 C -0.100 4.100 26 C -0.097 4.097 27 C 0.041 3.959 28 N -0.564 5.564 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.148 0.852 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.060 0.940 44 H -0.009 1.009 45 H 0.259 0.741 46 H 0.048 0.952 47 H 0.047 0.953 48 H 0.068 0.932 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.071 29.845 0.483 31.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.011 3.989 3 C -0.231 4.231 4 C -0.059 4.059 5 C -0.233 4.233 6 C 0.123 3.877 7 O -0.215 6.215 8 C 0.033 3.967 9 H 0.112 0.888 10 C -0.163 4.163 11 C -0.090 4.090 12 N -0.244 5.244 13 C -0.016 4.016 14 C -0.134 4.134 15 C -0.138 4.138 16 C 0.026 3.974 17 C -0.571 4.571 18 H 0.069 0.931 19 C -0.188 4.188 20 N -0.556 5.556 21 Si 0.778 3.222 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.138 4.138 26 C -0.135 4.135 27 C -0.087 4.087 28 N -0.289 5.289 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.166 0.834 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.009 0.991 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.709 28.901 0.859 30.197 hybrid contribution -0.188 -0.996 -0.540 1.148 sum -8.897 27.905 0.318 29.291 Atomic orbital electron populations 1.20828 0.86891 1.04327 1.03997 1.21540 0.97993 0.87388 0.91997 1.22183 0.95138 0.99741 1.05998 1.21832 0.94626 0.97869 0.91564 1.21351 1.02118 0.90487 1.09369 1.20146 0.88349 0.86538 0.92684 1.86332 1.35584 1.12204 1.87396 1.23127 0.93972 0.82451 0.97163 0.88815 1.22830 1.02829 0.94671 0.95959 1.23195 0.93386 0.95472 0.96937 1.64809 1.45821 1.01747 1.12001 1.21700 0.97319 0.87902 0.94635 1.21489 1.00678 0.94254 0.96946 1.21387 0.97616 0.95156 0.99596 1.18636 0.93576 0.92495 0.92679 1.21658 1.49141 0.92505 0.93804 0.93133 1.25756 0.95043 1.02645 0.95387 1.70033 1.50878 1.29387 1.05321 0.85594 0.77574 0.80136 0.78877 1.19223 1.20745 1.20611 1.21484 1.00093 0.94198 0.98032 1.21473 0.98188 0.96670 0.97160 1.22897 1.01271 0.90331 0.94225 1.67053 1.08515 1.32474 1.20859 0.89363 0.88028 0.91413 0.81542 0.80854 0.83444 0.90647 0.89483 0.93044 0.89536 0.94311 0.93490 0.92382 0.95455 0.92171 0.99083 0.93149 0.93361 0.93387 0.91377 0.92775 0.92005 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.17 71.23 0.72 -0.33 16 2 C 0.15 2.40 6.78 42.51 0.29 2.69 16 3 C -0.21 -2.47 9.74 22.37 0.22 -2.25 16 4 C -0.03 -0.41 10.17 22.45 0.23 -0.18 16 5 C -0.21 -3.81 10.04 22.47 0.23 -3.58 16 6 C 0.30 7.03 7.48 84.78 0.63 7.67 16 7 O -0.31 -8.05 9.71 -89.95 -0.87 -8.93 16 8 C 0.09 2.23 3.27 31.47 0.10 2.33 16 9 H 0.09 2.32 6.96 -2.39 -0.02 2.31 16 10 C -0.12 -2.94 6.80 31.80 0.22 -2.73 16 11 C 0.04 0.99 5.38 86.65 0.47 1.45 16 12 N -0.52 -15.69 5.11 -857.84 -4.38 -20.08 16 13 C 0.09 3.19 1.63 44.92 0.07 3.26 16 14 C -0.10 -3.79 5.04 30.59 0.15 -3.64 16 15 C -0.10 -4.79 4.98 30.59 0.15 -4.64 16 16 C 0.04 2.30 2.10 -11.54 -0.02 2.27 16 17 C -0.53 -30.13 8.56 25.60 0.22 -29.91 16 18 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 19 C 0.01 0.56 5.30 84.65 0.45 1.01 16 20 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 21 Si 0.95 44.54 29.54 68.60 2.03 46.56 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 C -0.10 -4.23 5.14 30.59 0.16 -4.08 16 26 C -0.10 -3.49 5.17 30.60 0.16 -3.33 16 27 C 0.04 1.09 5.31 86.44 0.46 1.55 16 28 N -0.56 -12.57 8.55 -296.98 -2.54 -15.11 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 33 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 34 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.31 8.01 -2.38 -0.02 1.29 16 38 H 0.09 2.28 7.65 -2.39 -0.02 2.27 16 39 H 0.04 1.34 7.98 -2.38 -0.02 1.32 16 40 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.06 2.08 6.91 -2.39 -0.02 2.06 16 42 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 44 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 46 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.07 2.12 7.27 -2.39 -0.02 2.10 16 49 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.06 1.59 7.63 -2.39 -0.02 1.57 16 51 H 0.09 2.37 7.96 -2.39 -0.02 2.35 16 Total: -1.00 -66.48 394.71 0.26 -66.22 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.89 Total: 17.60 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.90 Total: -32.43 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -6.68 Total: -89.01 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.87 Total: -8.93 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.48 0.26 -66.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.756 kcal (2) G-P(sol) polarization free energy of solvation -66.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds