Wall clock time and date at job start Tue Mar 31 2020 16:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38821 * 120.35789 * 2 1 4 4 C 1.38384 * 118.48789 * 179.75233 * 3 2 1 5 5 C 1.38927 * 119.10758 * 0.55469 * 4 3 2 6 6 O 1.35671 * 119.68132 * 179.70743 * 5 4 3 7 7 C 1.42902 * 116.99623 * 179.72840 * 6 5 4 8 8 H 1.09003 * 110.76884 * 333.20126 * 7 6 5 9 9 C 1.55138 * 110.70876 * 96.40385 * 7 6 5 10 10 C 1.54906 * 101.65573 * 154.03542 * 9 7 6 11 11 N 1.47840 * 104.79510 * 322.92945 * 10 9 7 12 12 C 1.46897 * 110.99988 * 146.36231 * 11 10 9 13 13 C 1.53002 * 109.47379 * 179.15624 * 12 11 10 14 14 C 1.52997 * 109.47352 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47116 * 59.99848 * 14 13 12 16 16 C 1.50702 * 109.46657 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99833 * 120.00775 * 16 15 14 18 18 C 1.37871 * 120.00134 * 299.99916 * 16 15 14 19 19 N 1.31512 * 120.00455 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99767 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47222 * 60.00469 * 20 18 16 22 22 H 1.48508 * 109.46900 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46982 * 299.99845 * 20 18 16 24 24 C 1.52992 * 109.47248 * 300.00260 * 15 14 13 25 25 C 1.52997 * 109.47274 * 59.99837 * 24 15 14 26 26 C 1.47446 * 108.56768 * 24.09731 * 11 10 9 27 27 N 1.32244 * 120.62960 * 359.43561 * 5 4 3 28 28 C 1.31971 * 121.64615 * 0.27466 * 27 5 4 29 29 H 1.08997 * 109.47178 * 269.97434 * 1 2 3 30 30 H 1.09008 * 109.46720 * 29.97631 * 1 2 3 31 31 H 1.09002 * 109.47364 * 149.97384 * 1 2 3 32 32 H 1.07999 * 120.75917 * 0.02882 * 3 2 1 33 33 H 1.07992 * 120.44740 * 180.25861 * 4 3 2 34 34 H 1.09006 * 110.98929 * 35.94010 * 9 7 6 35 35 H 1.09000 * 111.02473 * 272.14492 * 9 7 6 36 36 H 1.08998 * 110.36925 * 204.09914 * 10 9 7 37 37 H 1.08993 * 110.46447 * 81.81035 * 10 9 7 38 38 H 1.08991 * 109.47497 * 299.15883 * 12 11 10 39 39 H 1.09004 * 109.47345 * 300.00647 * 13 12 11 40 40 H 1.08999 * 109.46689 * 59.99804 * 13 12 11 41 41 H 1.09007 * 109.46877 * 299.99980 * 14 13 12 42 42 H 1.08998 * 109.47188 * 180.02562 * 14 13 12 43 43 H 1.08995 * 109.46793 * 60.00520 * 15 14 13 44 44 H 0.96996 * 120.00566 * 179.97438 * 19 18 16 45 45 H 1.09007 * 109.47077 * 300.00071 * 24 15 14 46 46 H 1.08999 * 109.47327 * 180.02562 * 24 15 14 47 47 H 1.09008 * 109.47298 * 179.97438 * 25 24 15 48 48 H 1.09007 * 109.46877 * 60.00112 * 25 24 15 49 49 H 1.08996 * 109.88895 * 118.41939 * 26 11 10 50 50 H 1.09001 * 109.88694 * 239.60335 * 26 11 10 51 51 H 1.08002 * 119.57600 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1979 0.0000 4 6 3.5917 1.1527 0.0053 5 6 4.2276 -0.0825 -0.0014 6 8 5.5831 -0.1403 -0.0024 7 6 6.1769 -1.4401 -0.0033 8 1 5.5104 -2.1699 0.4563 9 6 6.5511 -1.8712 -1.4459 10 6 7.7086 -2.8669 -1.1846 11 7 8.4527 -2.2902 -0.0447 12 6 9.0072 -3.3475 0.8111 13 6 9.7861 -2.7135 1.9653 14 6 10.3642 -3.8147 2.8563 15 6 11.3030 -4.6977 2.0316 16 6 11.8718 -5.7828 2.9092 17 1 11.6956 -6.8205 2.6675 18 6 12.6173 -5.4507 4.0204 19 7 12.8317 -4.1870 4.3150 20 14 13.3230 -6.7959 5.1078 21 1 14.2345 -7.6523 4.3072 22 1 14.0793 -6.1808 6.2281 23 1 12.2167 -7.6235 5.6521 24 6 10.5241 -5.3317 0.8775 25 6 9.9461 -4.2304 -0.0135 26 6 7.5412 -1.4172 0.7175 27 7 3.5243 -1.2024 -0.0014 28 6 2.2046 -1.1912 -0.0006 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6870 2.1435 0.0005 33 1 4.1690 2.0654 0.0096 34 1 6.8943 -1.0184 -2.0316 35 1 5.7129 -2.3667 -1.9358 36 1 8.3526 -2.9385 -2.0611 37 1 7.3147 -3.8489 -0.9229 38 1 8.1951 -3.9545 1.2110 39 1 10.5983 -2.1064 1.5653 40 1 9.1174 -2.0841 2.5524 41 1 9.5522 -4.4221 3.2563 42 1 10.9187 -3.3630 3.6788 43 1 12.1149 -4.0903 1.6317 44 1 13.3558 -3.9534 5.0970 45 1 9.7121 -5.9390 1.2775 46 1 11.1928 -5.9611 0.2903 47 1 9.3915 -4.6822 -0.8361 48 1 10.7581 -3.6231 -0.4135 49 1 7.4299 -1.7946 1.7340 50 1 7.9327 -0.4001 0.7381 51 1 1.6636 -2.1260 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:33 Heat of formation + Delta-G solvation = -14.008316 kcal Electronic energy + Delta-G solvation = -28155.313176 eV Core-core repulsion = 24439.967053 eV Total energy + Delta-G solvation = -3715.346123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97489 -39.57995 -38.06127 -36.25401 -33.50593 -32.91076 -32.08641 -30.86414 -29.98829 -28.54878 -27.81586 -26.85768 -24.53644 -24.01731 -22.49201 -21.95211 -21.67526 -20.55509 -19.85791 -18.90472 -18.58288 -17.21641 -16.32061 -15.99353 -15.62282 -15.54429 -15.25628 -14.68738 -14.45226 -14.15554 -14.05703 -13.84816 -13.48296 -13.36518 -13.02968 -12.91983 -12.80869 -12.68616 -12.50367 -12.32993 -12.09918 -12.01496 -11.56204 -11.37878 -11.06196 -10.96967 -10.85698 -10.64724 -10.58956 -10.49233 -10.31107 -10.18001 -10.10696 -9.82002 -9.72548 -9.30136 -8.82392 -8.60023 -8.58711 -8.24114 -8.09004 -5.92175 -3.98274 0.84573 0.95254 2.80632 3.34848 3.39519 3.42098 3.45128 3.97425 4.14692 4.43250 4.48387 4.53059 4.57001 4.62767 4.67102 4.81620 5.06242 5.15269 5.18752 5.28977 5.35894 5.37063 5.42891 5.49085 5.50305 5.51841 5.61929 5.65174 5.77475 5.92092 5.93414 5.95250 5.96196 6.02335 6.19618 6.25393 6.37178 6.44494 6.49240 6.59016 6.73341 6.82684 7.00456 7.10733 7.15850 7.20959 7.30430 7.43802 7.59014 7.60038 7.81046 8.09395 8.22269 8.53669 9.05762 9.65900 11.13248 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.002099 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.264714 B =13333.796987 C =13696.039412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.184 4.184 3 C -0.042 4.042 4 C -0.189 4.189 5 C 0.322 3.678 6 O -0.292 6.292 7 C 0.069 3.931 8 H 0.096 0.904 9 C -0.142 4.142 10 C 0.046 3.954 11 N -0.519 5.519 12 C 0.084 3.916 13 C -0.109 4.109 14 C -0.108 4.108 15 C 0.049 3.951 16 C -0.513 4.513 17 H 0.052 0.948 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.107 4.107 25 C -0.106 4.106 26 C 0.046 3.954 27 N -0.537 5.537 28 C 0.141 3.859 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.030 0.970 42 H 0.093 0.907 43 H 0.026 0.974 44 H 0.259 0.741 45 H 0.044 0.956 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.087 0.913 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.331 10.496 -10.793 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.187 4.187 3 C -0.067 4.067 4 C -0.210 4.210 5 C 0.143 3.857 6 O -0.198 6.198 7 C 0.012 3.988 8 H 0.114 0.886 9 C -0.181 4.181 10 C -0.082 4.082 11 N -0.244 5.244 12 C -0.023 4.023 13 C -0.147 4.147 14 C -0.146 4.146 15 C 0.031 3.969 16 C -0.551 4.551 17 H 0.071 0.929 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.082 4.082 27 N -0.260 5.260 28 C -0.015 4.015 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.111 0.889 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.128 10.310 -10.834 26.708 hybrid contribution -0.750 -0.604 0.972 1.368 sum -22.878 9.706 -9.862 26.737 Atomic orbital electron populations 1.20621 0.90060 1.02918 1.02410 1.20752 0.97710 0.93993 1.06217 1.21297 0.92788 0.98399 0.94255 1.21098 0.94743 0.96997 1.08116 1.19886 0.84569 0.89810 0.91431 1.86302 1.14743 1.31966 1.86795 1.23747 0.94839 0.82948 0.97284 0.88556 1.23113 0.98498 1.00115 0.96325 1.22926 0.93771 0.96077 0.95392 1.63774 1.31491 1.20162 1.08952 1.21953 0.96210 0.90775 0.93369 1.21733 0.98630 0.99071 0.95227 1.21610 0.97942 0.95510 0.99553 1.18647 0.92959 0.94238 0.91096 1.21206 1.31715 0.92764 1.09399 0.92940 1.24968 0.96225 0.95220 0.97627 1.69863 1.39947 1.15846 1.27262 0.86724 0.79187 0.82245 0.80195 1.20376 1.21378 1.20416 1.21619 0.98992 0.96290 0.97646 1.21593 0.98322 0.97203 0.97253 1.22874 0.88884 0.99928 0.96538 1.67294 1.09556 1.30169 1.18944 1.22324 0.88130 0.97772 0.93296 0.91189 0.91522 0.91366 0.84285 0.84040 0.89990 0.90660 0.89860 0.93262 0.94665 0.91963 0.94040 0.95122 0.88871 0.95582 0.93068 0.93694 0.93305 0.93798 0.91748 0.91383 0.89504 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.03 36.01 0.36 -0.11 16 2 C -0.18 -1.38 5.90 -104.48 -0.62 -2.00 16 3 C -0.04 -0.31 9.85 -39.31 -0.39 -0.70 16 4 C -0.19 -1.79 10.04 -39.27 -0.39 -2.19 16 5 C 0.32 3.87 7.49 -17.12 -0.13 3.74 16 6 O -0.29 -3.84 9.84 -18.72 -0.18 -4.03 16 7 C 0.07 0.91 3.24 -24.91 -0.08 0.82 16 8 H 0.10 1.32 6.96 -51.93 -0.36 0.96 16 9 C -0.14 -1.71 6.80 -24.59 -0.17 -1.88 16 10 C 0.05 0.60 5.40 -2.30 -0.01 0.59 16 11 N -0.52 -8.00 5.03 -223.30 -1.12 -9.12 16 12 C 0.08 1.48 1.53 -67.71 -0.10 1.38 16 13 C -0.11 -2.15 5.07 -26.73 -0.14 -2.29 16 14 C -0.11 -2.55 4.98 -26.73 -0.13 -2.68 16 15 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 16 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 19 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.11 -2.25 5.14 -26.74 -0.14 -2.39 16 25 C -0.11 -1.90 5.08 -26.73 -0.14 -2.04 16 26 C 0.05 0.66 5.92 -2.83 -0.02 0.64 16 27 N -0.54 -6.35 8.63 -13.33 -0.12 -6.46 16 28 C 0.14 1.28 10.85 -17.56 -0.19 1.08 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.24 8.10 -51.92 -0.42 -0.18 16 31 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.65 7.57 -51.93 -0.39 0.26 16 38 H 0.04 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.04 0.76 6.50 -51.93 -0.34 0.43 16 41 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.04 0.94 8.14 -51.92 -0.42 0.51 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.04 0.70 7.03 -51.92 -0.37 0.33 16 48 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 49 H 0.07 1.02 6.35 -51.93 -0.33 0.69 16 50 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 51 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -29.80 393.44 -11.57 -41.37 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -8.82 Total: 0.67 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -2.86 Total: -19.85 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -0.61 Total: -40.56 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.18 Total: -4.03 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.80 -11.57 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.359 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds